Wall clock time and date at job start Wed Apr 1 2020 00:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47302 * 2 1 4 4 C 1.50704 * 109.47197 * 240.00465 * 2 1 3 5 5 H 1.07998 * 119.99820 * 240.00320 * 4 2 1 6 6 C 1.37877 * 120.00071 * 59.99194 * 4 2 1 7 7 N 1.31518 * 119.99901 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00019 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47122 * 60.00623 * 8 6 4 10 10 H 1.48505 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46960 * 300.00319 * 8 6 4 12 12 N 1.46499 * 109.47354 * 120.00670 * 2 1 3 13 13 C 1.46494 * 120.00176 * 64.78356 * 12 2 1 14 14 S 1.65603 * 119.99590 * 244.79140 * 12 2 1 15 15 O 1.42104 * 106.39845 * 195.68232 * 14 12 2 16 16 O 1.42099 * 106.40170 * 328.59851 * 14 12 2 17 17 C 1.76201 * 107.22016 * 82.14055 * 14 12 2 18 18 C 1.35309 * 126.04210 * 247.47897 * 17 14 12 19 19 N 1.34941 * 107.74947 * 180.02562 * 18 17 14 20 20 C 1.46502 * 126.04335 * 180.02562 * 19 18 17 21 21 N 1.40084 * 107.92384 * 359.97438 * 19 18 17 22 22 C 1.30833 * 108.20689 * 359.72212 * 21 19 18 23 23 C 1.50702 * 125.90376 * 180.25519 * 22 21 19 24 24 C 1.54275 * 110.02902 * 68.53868 * 23 22 21 25 25 C 1.54960 * 104.15714 * 217.13869 * 24 23 22 26 26 C 1.54889 * 102.78087 * 37.88544 * 25 24 23 27 27 C 1.53874 * 110.02980 * 311.32377 * 23 22 21 28 28 H 1.08992 * 109.46741 * 293.91056 * 1 2 3 29 29 H 1.08992 * 109.46928 * 173.90585 * 1 2 3 30 30 H 1.09003 * 109.47011 * 53.90473 * 1 2 3 31 31 H 0.97002 * 119.99338 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47036 * 85.17490 * 13 12 2 33 33 H 1.09002 * 109.47560 * 205.16832 * 13 12 2 34 34 H 1.08997 * 109.47251 * 325.17247 * 13 12 2 35 35 H 1.08006 * 126.12462 * 359.97438 * 18 17 14 36 36 H 1.08997 * 109.47005 * 89.99314 * 20 19 18 37 37 H 1.08993 * 109.47431 * 209.99775 * 20 19 18 38 38 H 1.08997 * 109.46701 * 330.00006 * 20 19 18 39 39 H 1.09001 * 110.01765 * 189.92956 * 23 22 21 40 40 H 1.09002 * 110.48597 * 335.78521 * 24 23 22 41 41 H 1.08996 * 110.48227 * 98.43249 * 24 23 22 42 42 H 1.09005 * 110.71963 * 279.57241 * 25 24 23 43 43 H 1.09001 * 110.76536 * 156.22768 * 25 24 23 44 44 H 1.09000 * 110.48861 * 203.40228 * 26 25 24 45 45 H 1.09001 * 110.59439 * 80.81979 * 26 25 24 46 46 H 1.08997 * 110.02810 * 238.56557 * 27 23 22 47 47 H 1.08993 * 110.03276 * 359.95061 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9433 0.8302 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8267 -0.4197 -5.2206 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6907 1.1961 13 6 1.7530 -2.1201 1.3761 14 16 2.8703 0.1445 2.3446 15 8 3.5065 -0.8302 3.1599 16 8 3.5802 1.1642 1.6551 17 6 1.6962 0.9633 3.3721 18 6 1.5078 2.3005 3.4565 19 7 0.5221 2.5215 4.3511 20 6 -0.0041 3.8297 4.7484 21 7 0.0900 1.2788 4.8322 22 6 0.7900 0.3454 4.2402 23 6 0.6480 -1.1388 4.4593 24 6 -0.7032 -1.6288 3.8986 25 6 -1.1631 -2.7101 4.9089 26 6 -0.7178 -2.1191 6.2696 27 6 0.6390 -1.4507 5.9660 28 1 -0.3632 0.4165 0.9394 29 1 -0.3633 -1.0218 -0.1091 30 1 -0.3633 0.6054 -0.8304 31 1 0.7093 1.1618 -3.4844 32 1 2.5184 -2.6997 0.8598 33 1 1.7697 -2.3618 2.4389 34 1 0.7736 -2.3626 0.9638 35 1 2.0499 3.0558 2.9068 36 1 -0.8306 4.1032 4.0925 37 1 -0.3580 3.7816 5.7781 38 1 0.7848 4.5777 4.6699 39 1 1.4678 -1.6679 3.9733 40 1 -1.4214 -0.8095 3.8637 41 1 -0.5701 -2.0632 2.9079 42 1 -0.6595 -3.6573 4.7158 43 1 -2.2456 -2.8334 4.8769 44 1 -0.5960 -2.9115 7.0081 45 1 -1.4375 -1.3794 6.6203 46 1 1.4539 -2.1318 6.2111 47 1 0.7382 -0.5287 6.5387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906920213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:36 Heat of formation + Delta-G solvation = -25.938716 kcal Electronic energy + Delta-G solvation = -29992.711649 eV Core-core repulsion = 26110.118469 eV Total energy + Delta-G solvation = -3882.593180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.47412 -39.04502 -38.16251 -37.81242 -36.80157 -34.50213 -34.43333 -31.60656 -30.94070 -30.20282 -29.57955 -27.27135 -27.18370 -26.81459 -23.08322 -22.78488 -22.37489 -21.47336 -20.28570 -19.65935 -18.91157 -18.52210 -17.94449 -17.09973 -16.92487 -16.58780 -16.45453 -16.24700 -16.05510 -15.21547 -14.82506 -14.63515 -14.57814 -14.49166 -14.23384 -13.85651 -13.69177 -13.59339 -13.33305 -13.15325 -13.11915 -12.92816 -12.73506 -12.70842 -12.60472 -12.44119 -12.33985 -12.14352 -12.13957 -11.96569 -11.89734 -11.84454 -11.66503 -11.42504 -11.33976 -11.08625 -10.47630 -10.44937 -10.15072 -9.58441 -8.07697 -6.19692 -0.40174 0.50947 1.15098 1.42356 1.47263 1.49130 1.55832 2.26164 2.49074 2.89919 3.19203 3.21917 3.37535 3.67992 3.75951 3.80489 3.86242 4.09744 4.24246 4.33351 4.36912 4.41171 4.54870 4.58323 4.61284 4.62712 4.76524 4.84049 4.86225 4.88057 4.98555 5.01842 5.07556 5.11694 5.16184 5.17907 5.23099 5.33864 5.37680 5.40637 5.53693 5.65348 5.76394 5.81364 5.90622 6.14826 6.33836 6.38637 6.87337 7.48714 8.97239 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.004502 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.364866 B = 6217.843616 C = 6921.933918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.278 3.722 3 H 0.025 0.975 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.986 5.986 13 C 0.097 3.903 14 S 2.721 3.279 15 O -0.987 6.987 16 O -1.000 7.000 17 C -0.829 4.829 18 C 0.174 3.826 19 N -0.360 5.360 20 C 0.082 3.918 21 N -0.305 5.305 22 C 0.166 3.834 23 C -0.043 4.043 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.112 4.112 28 H 0.023 0.977 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.212 0.788 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 0.034 16.793 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.174 3.826 3 H 0.042 0.958 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.825 5.825 13 C -0.048 4.048 14 S 2.813 3.187 15 O -0.977 6.977 16 O -0.990 6.990 17 C -0.930 4.930 18 C 0.019 3.981 19 N -0.136 5.136 20 C -0.057 4.057 21 N -0.125 5.125 22 C -0.003 4.003 23 C -0.064 4.064 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.151 4.151 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.229 0.771 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.001 0.642 17.689 18.690 hybrid contribution 0.456 0.258 -1.592 1.676 sum -5.545 0.900 16.097 17.049 Atomic orbital electron populations 1.21861 0.97324 1.00563 0.99022 1.18361 0.91710 0.91350 0.81172 0.95762 1.21585 1.31580 1.13091 0.91075 0.92071 1.25608 0.95199 0.95688 1.01547 1.69989 1.37426 1.23753 1.24294 0.85665 0.78505 0.79028 0.78753 1.19150 1.20950 1.20382 1.57207 1.74150 1.18259 1.32897 1.21525 1.02522 0.79488 1.01262 1.00566 0.73468 0.72586 0.72106 1.93462 1.73892 1.60672 1.69667 1.93484 1.71248 1.60408 1.73889 1.31489 1.29037 1.05137 1.27315 1.22808 0.89183 0.96195 0.89889 1.49327 1.26310 1.07676 1.30297 1.22477 1.02178 0.77287 1.03732 1.77187 1.23362 0.88537 1.23414 1.21927 0.90458 0.96723 0.91225 1.20863 1.00652 0.85457 0.99389 1.22490 0.93927 0.99044 0.99976 1.22523 1.01580 0.97815 0.93549 1.22320 0.95301 0.99819 0.97799 1.22182 0.99603 1.00938 0.92336 0.95769 0.93908 0.91771 0.92754 0.93193 0.90140 0.90346 0.77105 0.88885 0.87731 0.86038 0.88894 0.92397 0.90650 0.89911 0.90185 0.89692 0.91889 0.90330 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.82 71.98 0.63 -5.21 16 2 C 0.28 13.68 2.63 44.25 0.12 13.80 16 3 H 0.02 1.35 7.06 -2.39 -0.02 1.33 16 4 C -0.53 -28.54 8.31 25.60 0.21 -28.33 16 5 H 0.06 3.22 7.25 -2.91 -0.02 3.20 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.92 -50.91 11.39 21.45 0.24 -50.66 16 8 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 N -0.99 -41.47 3.06 -520.45 -1.59 -43.07 16 13 C 0.10 3.43 9.00 127.77 1.15 4.58 16 14 S 2.72 111.94 5.36 -56.49 -0.30 111.63 16 15 O -0.99 -41.19 15.48 -128.00 -1.98 -43.17 16 16 O -1.00 -47.35 16.52 -128.00 -2.11 -49.46 16 17 C -0.83 -29.21 6.15 21.99 0.14 -29.07 16 18 C 0.17 5.20 11.12 83.54 0.93 6.13 16 19 N -0.36 -9.38 4.01 -369.58 -1.48 -10.86 16 20 C 0.08 1.16 11.47 127.77 1.47 2.63 16 21 N -0.30 -9.32 12.20 -47.38 -0.58 -9.90 16 22 C 0.17 5.40 5.53 43.10 0.24 5.64 16 23 C -0.04 -1.23 3.26 -10.81 -0.04 -1.27 16 24 C -0.12 -2.92 6.36 31.70 0.20 -2.71 16 25 C -0.12 -2.20 6.91 31.91 0.22 -1.98 16 26 C -0.11 -2.15 6.83 31.67 0.22 -1.93 16 27 C -0.11 -2.68 6.41 31.32 0.20 -2.48 16 28 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.04 1.84 7.10 -2.39 -0.02 1.82 16 30 H 0.06 3.24 6.26 -2.39 -0.01 3.23 16 31 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.05 1.76 7.84 -2.38 -0.02 1.74 16 33 H 0.08 2.44 4.85 -2.39 -0.01 2.43 16 34 H 0.08 2.60 6.77 -2.39 -0.02 2.58 16 35 H 0.21 5.19 8.06 -2.91 -0.02 5.16 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16 39 H 0.09 2.81 3.84 -2.39 -0.01 2.80 16 40 H 0.06 1.59 7.85 -2.39 -0.02 1.57 16 41 H 0.07 1.90 7.57 -2.39 -0.02 1.88 16 42 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.06 1.47 7.42 -2.39 -0.02 1.46 16 Total: -1.00 -71.53 380.44 1.32 -70.21 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.97 Total: 19.17 kcal Atomic # 6 Polarization: -44.86 SS G_CDS: 6.13 Total: -38.73 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -3.41 Total: -114.49 kcal Atomic # 8 Polarization: -88.54 SS G_CDS: -4.10 Total: -92.64 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 111.94 SS G_CDS: -0.30 Total: 111.63 kcal Total: -71.53 1.32 -70.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906920213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.274 kcal (2) G-P(sol) polarization free energy of solvation -71.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds