Wall clock time and date at job start Wed Apr 1 2020 01:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47077 * 2 1 4 4 C 1.34774 * 119.99869 * 184.97358 * 3 2 1 5 5 O 1.21610 * 120.00099 * 5.01488 * 4 3 2 6 6 N 1.34779 * 119.99785 * 185.01801 * 4 3 2 7 7 N 1.40093 * 120.00145 * 5.00455 * 6 4 3 8 8 C 1.29743 * 120.00208 * 174.99502 * 7 6 4 9 9 C 1.47445 * 120.00544 * 185.00889 * 8 7 6 10 10 C 1.36754 * 126.68036 * 354.70556 * 9 8 7 11 11 N 1.34637 * 108.04525 * 180.02562 * 10 9 8 12 12 C 1.46500 * 125.25589 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47008 * 125.00375 * 12 11 10 14 14 H 1.07993 * 120.00134 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99435 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00364 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99404 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47351 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46912 * 119.99968 * 17 15 13 20 20 H 1.48494 * 109.47140 * 240.00114 * 17 15 13 21 21 N 1.39824 * 109.49173 * 0.02562 * 11 10 9 22 22 C 1.31529 * 108.82125 * 359.70112 * 21 11 10 23 23 C 1.48269 * 126.49932 * 180.28056 * 22 21 11 24 24 C 1.39388 * 120.12551 * 138.72614 * 23 22 21 25 25 C 1.38011 * 119.86795 * 179.72131 * 24 23 22 26 26 C 1.38335 * 120.12671 * 0.56275 * 25 24 23 27 27 C 1.38331 * 120.25454 * 359.71269 * 26 25 24 28 28 C 1.38008 * 120.12450 * 0.02562 * 27 26 25 29 29 H 1.09006 * 109.46961 * 184.98549 * 1 2 3 30 30 H 1.09000 * 109.47177 * 304.98824 * 1 2 3 31 31 H 1.08999 * 109.46923 * 64.98893 * 1 2 3 32 32 H 1.08999 * 109.47490 * 239.99983 * 2 1 3 33 33 H 1.08998 * 109.47370 * 119.99536 * 2 1 3 34 34 H 0.96999 * 120.00099 * 4.96866 * 3 2 1 35 35 H 0.97000 * 119.99482 * 185.01542 * 6 4 3 36 36 H 1.08004 * 120.00067 * 5.28515 * 8 7 6 37 37 H 1.07999 * 125.97736 * 359.96973 * 10 9 8 38 38 H 1.09001 * 109.47069 * 245.00571 * 12 11 10 39 39 H 1.08994 * 109.47052 * 5.00035 * 12 11 10 40 40 H 0.96992 * 119.99470 * 179.97438 * 16 15 13 41 41 H 1.07994 * 120.06462 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.93762 * 180.27530 * 25 24 23 43 43 H 1.07998 * 119.87214 * 179.74303 * 26 25 24 44 44 H 1.08001 * 119.93454 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.05767 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3392 1.6290 -0.1012 5 8 4.1175 0.7126 -0.2840 6 7 3.7976 2.8924 0.0003 7 7 2.9157 3.9344 0.3151 8 6 3.3712 5.1337 0.5084 9 6 2.4601 6.2067 0.9473 10 6 1.1033 6.1172 1.0937 11 7 0.6491 7.3140 1.5109 12 6 -0.7529 7.6368 1.7874 13 6 -0.8773 8.1758 3.1892 14 1 0.0003 8.2691 3.8117 15 6 -2.1115 8.5500 3.6769 16 7 -3.1801 8.4369 2.9187 17 14 -2.2657 9.2175 5.4148 18 1 -0.9262 9.2451 6.0552 19 1 -2.8203 10.5943 5.3688 20 1 -3.1732 8.3443 6.2017 21 7 1.7220 8.2013 1.6396 22 6 2.8322 7.5744 1.3162 23 6 4.2006 8.1451 1.3207 24 6 5.2711 7.3920 1.8001 25 6 6.5436 7.9263 1.7965 26 6 6.7559 9.2109 1.3290 27 6 5.6965 9.9649 0.8573 28 6 4.4205 9.4390 0.8512 29 1 -0.3633 -1.0238 0.0893 30 1 -0.3633 0.5893 0.8419 31 1 -0.3633 0.4345 -0.9313 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.3910 2.1175 0.0728 35 1 4.7382 3.0801 -0.1447 36 1 4.4170 5.3473 0.3435 37 1 0.5014 5.2403 0.9065 38 1 -1.0998 8.3876 1.0773 39 1 -1.3592 6.7364 1.6892 40 1 -4.0483 8.6998 3.2620 41 1 5.1058 6.3906 2.1692 42 1 7.3745 7.3422 2.1636 43 1 7.7527 9.6264 1.3319 44 1 5.8682 10.9671 0.4932 45 1 3.5942 10.0285 0.4823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920827879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:52 Heat of formation + Delta-G solvation = 80.960424 kcal Electronic energy + Delta-G solvation = -27873.993161 eV Core-core repulsion = 23892.884275 eV Total energy + Delta-G solvation = -3981.108886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90388 -41.01327 -39.71974 -37.81459 -36.27467 -35.74113 -34.11368 -33.51847 -31.80188 -31.61026 -31.10699 -30.17928 -28.58001 -25.53981 -24.67104 -23.98121 -23.44788 -22.91174 -21.95292 -21.07379 -20.72089 -19.22565 -18.67308 -18.31989 -17.89643 -17.32273 -16.84009 -16.49729 -16.37222 -16.13716 -15.90155 -15.50833 -15.40456 -15.19914 -14.88412 -14.49643 -14.28226 -14.17276 -14.09631 -13.70146 -13.52987 -13.34346 -13.27508 -12.91514 -12.74151 -12.67638 -12.37530 -12.32835 -12.14736 -12.02111 -11.76458 -11.69089 -11.50649 -11.27883 -10.77301 -10.72503 -10.51428 -10.04353 -9.79628 -9.47917 -8.78184 -8.34042 -6.48104 0.12230 0.45219 0.55385 1.29629 1.36300 1.39520 1.45266 1.51046 1.78138 1.95133 2.32168 2.34378 2.56829 2.96560 2.98893 3.45265 3.68214 3.98129 4.10747 4.14066 4.19387 4.25197 4.30786 4.32191 4.37781 4.54068 4.63672 4.68769 4.77536 4.90446 4.93189 4.97193 5.07216 5.07731 5.10416 5.21298 5.28330 5.43766 5.50322 5.55291 5.65433 5.68473 5.71177 5.76466 5.83051 6.12527 6.13309 6.31698 6.61411 6.88905 7.10955 7.22092 7.53652 8.73052 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.005877 B = 0.003712 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4763.452025 B = 7542.232960 C =11721.209512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 N -0.725 5.725 4 C 0.727 3.273 5 O -0.628 6.628 6 N -0.583 5.583 7 N -0.293 5.293 8 C 0.199 3.801 9 C -0.225 4.225 10 C 0.105 3.895 11 N -0.344 5.344 12 C 0.267 3.733 13 C -0.547 4.547 14 H 0.052 0.948 15 C 0.023 3.977 16 N -0.918 5.918 17 Si 0.966 3.034 18 H -0.275 1.275 19 H -0.275 1.275 20 H -0.270 1.270 21 N -0.305 5.305 22 C 0.118 3.882 23 C -0.027 4.027 24 C -0.104 4.104 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.122 4.122 28 C -0.111 4.111 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.414 0.586 35 H 0.405 0.595 36 H 0.143 0.857 37 H 0.200 0.800 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.272 0.728 41 H 0.133 0.867 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.144 0.856 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.215 -6.971 -5.735 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 N -0.381 5.381 4 C 0.427 3.573 5 O -0.507 6.507 6 N -0.330 5.330 7 N -0.103 5.103 8 C -0.010 4.010 9 C -0.241 4.241 10 C -0.047 4.047 11 N -0.122 5.122 12 C 0.149 3.851 13 C -0.585 4.585 14 H 0.070 0.930 15 C -0.178 4.178 16 N -0.557 5.557 17 Si 0.791 3.209 18 H -0.200 1.200 19 H -0.200 1.200 20 H -0.195 1.195 21 N -0.125 5.125 22 C -0.051 4.051 23 C -0.029 4.029 24 C -0.123 4.123 25 C -0.135 4.135 26 C -0.130 4.130 27 C -0.140 4.140 28 C -0.130 4.130 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.251 0.749 35 H 0.246 0.754 36 H 0.160 0.840 37 H 0.217 0.783 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.151 0.849 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.162 0.838 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.926 -7.298 -5.486 16.652 hybrid contribution 0.362 0.634 0.388 0.827 sum 14.288 -6.663 -5.097 16.569 Atomic orbital electron populations 1.21974 0.92212 1.04281 1.03048 1.21341 0.95812 0.80935 1.01729 1.45229 1.05320 1.10446 1.77128 1.15597 0.83552 0.80964 0.77211 1.90950 1.57269 1.42726 1.59757 1.46086 1.09889 1.03790 1.73241 1.74369 1.20797 0.98281 1.16825 1.23316 0.97672 0.88242 0.91814 1.19180 0.91503 0.93223 1.20155 1.23158 0.95370 0.90664 0.95493 1.48981 1.08172 1.07500 1.47535 1.19416 0.71302 0.97762 0.96632 1.21393 0.94050 1.44479 0.98547 0.92963 1.25655 0.94877 0.95186 1.02094 1.69983 0.99595 1.47875 1.38240 0.85377 0.78104 0.78369 0.79064 1.19988 1.19998 1.19509 1.77459 0.93751 1.17999 1.23310 1.22303 0.92712 0.91402 0.98708 1.17899 0.88136 0.94836 1.01994 1.21322 0.92039 1.00182 0.98797 1.21418 0.96559 0.96216 0.99318 1.21621 0.99978 0.94296 0.97108 1.21358 0.91731 1.01041 0.99871 1.21315 0.98183 0.94104 0.99414 0.89053 0.91717 0.91575 0.91915 0.92305 0.74930 0.75361 0.83963 0.78301 0.95746 0.92101 0.91837 0.84943 0.82793 0.82906 0.83805 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 10.03 71.98 0.72 -1.40 16 2 C 0.13 2.39 6.42 86.38 0.55 2.94 16 3 N -0.73 -16.60 5.50 -478.51 -2.63 -19.23 16 4 C 0.73 19.95 8.67 179.05 1.55 21.51 16 5 O -0.63 -21.13 17.16 -4.06 -0.07 -21.20 16 6 N -0.58 -13.66 6.26 -184.72 -1.16 -14.82 16 7 N -0.29 -7.00 10.13 -52.20 -0.53 -7.53 16 8 C 0.20 4.67 10.11 87.43 0.88 5.55 16 9 C -0.23 -6.90 6.23 -19.05 -0.12 -7.02 16 10 C 0.10 3.58 11.11 83.91 0.93 4.51 16 11 N -0.34 -14.68 3.64 -350.84 -1.28 -15.95 16 12 C 0.27 13.02 6.22 85.63 0.53 13.56 16 13 C -0.55 -29.60 9.21 25.60 0.24 -29.36 16 14 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 15 C 0.02 1.21 5.46 84.66 0.46 1.67 16 16 N -0.92 -50.38 13.29 21.45 0.28 -50.10 16 17 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 N -0.31 -13.13 12.33 -44.56 -0.55 -13.68 16 22 C 0.12 4.09 6.88 44.00 0.30 4.39 16 23 C -0.03 -0.75 5.80 -20.05 -0.12 -0.87 16 24 C -0.10 -2.25 8.65 22.49 0.19 -2.05 16 25 C -0.12 -1.92 10.03 22.24 0.22 -1.70 16 26 C -0.11 -1.76 10.04 22.32 0.22 -1.54 16 27 C -0.12 -2.39 10.03 22.24 0.22 -2.17 16 28 C -0.11 -2.94 9.78 22.49 0.22 -2.72 16 29 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.41 8.80 7.56 -92.71 -0.70 8.10 16 35 H 0.40 7.91 8.76 -213.33 -1.87 6.04 16 36 H 0.14 2.54 6.92 -2.91 -0.02 2.52 16 37 H 0.20 5.57 8.06 -2.91 -0.02 5.55 16 38 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 2.88 8.05 -2.39 -0.02 2.86 16 40 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.13 2.56 7.19 -2.91 -0.02 2.54 16 42 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.11 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -69.15 397.55 1.59 -67.56 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -1.54 Total: 25.04 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 7.03 Total: 5.30 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -5.86 Total: -121.31 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.07 Total: -21.20 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -69.15 1.59 -67.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920827879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.521 kcal (2) G-P(sol) polarization free energy of solvation -69.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds