Wall clock time and date at job start Wed Apr 1 2020 00:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47475 * 2 1 4 4 C 1.35285 * 126.47224 * 264.97865 * 3 2 1 5 5 N 1.30767 * 108.76883 * 180.10864 * 4 3 2 6 6 C 1.33478 * 109.09659 * 0.02562 * 5 4 3 7 7 C 1.35036 * 108.13165 * 359.87297 * 6 5 4 8 8 C 1.50610 * 124.85099 * 180.22809 * 7 6 5 9 9 C 1.53421 * 108.80059 * 342.33531 * 8 7 6 10 10 N 1.47058 * 109.08442 * 45.07202 * 9 8 7 11 11 S 1.65601 * 120.80959 * 115.68291 * 10 9 8 12 12 O 1.42096 * 104.27550 * 333.92859 * 11 10 9 13 13 O 1.42097 * 104.27967 * 206.06703 * 11 10 9 14 14 C 1.81409 * 104.44942 * 89.99744 * 11 10 9 15 15 C 1.52999 * 109.46814 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47317 * 60.00042 * 15 14 11 17 17 C 1.52997 * 109.47269 * 299.99698 * 15 14 11 18 18 C 1.50706 * 109.46573 * 179.97438 * 15 14 11 19 19 H 1.07995 * 120.00167 * 359.72054 * 18 15 14 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 15 23 23 H 1.48492 * 109.47487 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47233 * 120.00158 * 22 20 18 25 25 H 1.48508 * 109.46883 * 239.99963 * 22 20 18 26 26 C 1.47404 * 118.38350 * 295.94985 * 10 9 8 27 27 H 1.09008 * 109.47121 * 299.99978 * 1 2 3 28 28 H 1.09004 * 109.46955 * 59.99958 * 1 2 3 29 29 H 1.09001 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46875 * 239.99672 * 2 1 3 31 31 H 1.08999 * 109.46648 * 120.00417 * 2 1 3 32 32 H 1.07998 * 125.61853 * 0.09769 * 4 3 2 33 33 H 1.09001 * 109.58349 * 222.54721 * 8 7 6 34 34 H 1.09000 * 109.69748 * 102.19915 * 8 7 6 35 35 H 1.08998 * 109.53850 * 285.19132 * 9 8 7 36 36 H 1.09001 * 109.53619 * 164.94798 * 9 8 7 37 37 H 1.09000 * 109.47067 * 60.00006 * 14 11 10 38 38 H 1.09001 * 109.46593 * 300.00012 * 14 11 10 39 39 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 40 40 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 41 41 H 1.08996 * 109.46952 * 59.99813 * 16 15 14 42 42 H 1.09000 * 109.47140 * 300.00547 * 17 15 14 43 43 H 1.09001 * 109.47230 * 59.99691 * 17 15 14 44 44 H 1.09001 * 109.47375 * 180.02562 * 17 15 14 45 45 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.89718 * 163.46983 * 26 10 9 47 47 H 1.08999 * 109.89417 * 284.58984 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3763 2.1076 -1.0837 5 7 2.7610 3.2929 -0.6874 6 6 2.6637 3.3617 0.6421 7 6 2.1985 2.1763 1.0913 8 6 1.9420 1.8448 2.5379 9 6 2.6881 2.8569 3.4169 10 7 2.4713 4.2097 2.8825 11 16 1.6549 5.3492 3.7642 12 8 0.8095 4.5915 4.6187 13 8 1.1122 6.2262 2.7866 14 6 2.9449 6.1876 4.7254 15 6 2.3088 7.2761 5.5922 16 6 1.2942 6.6411 6.5452 17 6 1.5993 8.2925 4.6953 18 6 3.3804 7.9721 6.3911 19 1 4.4114 7.6655 6.2940 20 6 3.0439 8.9969 7.2499 21 7 1.7877 9.3667 7.3722 22 14 4.3723 9.8602 8.2397 23 1 5.6935 9.2605 7.9238 24 1 4.3880 11.3042 7.8934 25 1 4.0912 9.7017 9.6893 26 6 2.9932 4.5249 1.5405 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 2.3489 1.7650 -2.1076 33 1 2.3034 0.8390 2.7518 34 1 0.8730 1.9004 2.7436 35 1 3.7540 2.6291 3.4107 36 1 2.3085 2.8031 4.4373 37 1 3.6680 6.6396 4.0464 38 1 3.4501 5.4635 5.3646 39 1 0.8414 7.4166 7.1630 40 1 0.5191 6.1374 5.9677 41 1 1.7997 5.9170 7.1841 42 1 2.3221 8.7449 4.0163 43 1 0.8242 7.7888 4.1177 44 1 1.1465 9.0683 5.3128 45 1 1.5510 10.0874 7.9767 46 1 2.5201 5.4309 1.1618 47 1 4.0738 4.6605 1.5851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922029525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:32 Heat of formation + Delta-G solvation = -6.637378 kcal Electronic energy + Delta-G solvation = -29079.675493 eV Core-core repulsion = 25197.919282 eV Total energy + Delta-G solvation = -3881.756211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41589 -37.24164 -36.60084 -36.24213 -35.33144 -35.23464 -31.84533 -31.64237 -30.22921 -29.51556 -26.63493 -25.69559 -25.22284 -25.05467 -23.96188 -23.33602 -20.84732 -19.77151 -19.36641 -18.04665 -17.51962 -16.95814 -16.02171 -15.93849 -15.81389 -15.36914 -14.98372 -14.74061 -14.55615 -14.41768 -14.07198 -13.75701 -13.24956 -13.17705 -12.98533 -12.91576 -12.74360 -12.48927 -12.28502 -12.22105 -12.08363 -11.77492 -11.73305 -11.36278 -11.19242 -11.06290 -11.01644 -10.89351 -10.67059 -10.33923 -10.25713 -10.09715 -10.00637 -9.73489 -9.63243 -9.52889 -8.98075 -8.61999 -8.38909 -8.21190 -6.01943 -4.13785 0.82052 1.87525 2.52659 3.00105 3.09404 3.26327 3.34810 3.37586 4.19805 4.29523 4.35366 4.43277 4.45769 4.51894 4.65743 4.73424 4.74688 4.94325 5.08116 5.14249 5.18074 5.23499 5.24848 5.37882 5.53125 5.59624 5.62312 5.65566 5.74847 5.77178 5.87083 6.19420 6.24363 6.40594 6.61175 6.62575 6.72694 6.81843 6.92849 7.06051 7.08185 7.33708 7.52346 7.69790 7.99583 8.00076 8.11625 8.34768 8.85115 9.51666 10.99394 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.002864 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.587286 B = 9775.827202 C = 9976.658111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.452 5.452 4 C 0.172 3.828 5 N -0.478 5.478 6 C -0.004 4.004 7 C -0.015 4.015 8 C -0.057 4.057 9 C 0.128 3.872 10 N -1.010 6.010 11 S 2.593 3.407 12 O -0.961 6.961 13 O -0.958 6.958 14 C -0.580 4.580 15 C 0.081 3.919 16 C -0.163 4.163 17 C -0.164 4.164 18 C -0.501 4.501 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.895 3.105 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.203 3.797 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.204 0.796 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.027 0.973 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.095 0.905 45 H 0.262 0.738 46 H 0.110 0.890 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 -20.094 -12.871 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.136 5.136 4 C -0.109 4.109 5 N -0.196 5.196 6 C -0.135 4.135 7 C -0.130 4.130 8 C -0.097 4.097 9 C 0.001 3.999 10 N -0.846 5.846 11 S 2.693 3.307 12 O -0.952 6.952 13 O -0.948 6.948 14 C -0.714 4.714 15 C 0.079 3.921 16 C -0.221 4.221 17 C -0.222 4.222 18 C -0.540 4.540 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.522 5.522 22 Si 0.723 3.277 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.077 3.923 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.221 0.779 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.113 0.887 40 H 0.046 0.954 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.113 0.887 45 H 0.072 0.928 46 H 0.128 0.872 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.190 -19.365 -13.349 23.521 hybrid contribution 1.089 -0.299 0.981 1.496 sum 1.279 -19.663 -12.368 23.264 Atomic orbital electron populations 1.22169 0.93975 1.03170 1.03595 1.21834 0.95806 0.79981 1.04507 1.45229 1.48891 1.12464 1.06981 1.24947 1.04333 0.88237 0.93394 1.69929 1.20318 1.18280 1.11066 1.20499 1.06796 0.95497 0.90680 1.20765 1.09196 0.92793 0.90257 1.20440 1.02114 0.99587 0.87519 1.21310 1.00285 0.80782 0.97484 1.58166 1.75550 1.23960 1.26879 1.05758 0.76773 0.73608 0.74550 1.93522 1.63606 1.70059 1.67972 1.93537 1.76472 1.65656 1.59174 1.30574 1.16259 1.11877 1.12673 1.17944 0.94160 0.88834 0.91164 1.22274 0.98126 1.00708 1.01006 1.22276 0.98996 1.02281 0.98627 1.20991 0.92880 1.16859 1.23282 0.92211 1.24943 0.95495 0.96700 0.96644 1.69813 1.16096 1.28987 1.37287 0.86483 0.81895 0.79458 0.79829 1.19824 1.20945 1.20990 1.19522 0.99093 0.94996 0.78674 0.91587 0.91716 0.90482 0.88752 0.89181 0.77912 0.90126 0.89843 0.90712 0.87972 0.86224 0.86368 0.88663 0.95380 0.94490 0.94383 0.95370 0.88661 0.92814 0.87227 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16 2 C 0.10 0.56 6.71 -4.04 -0.03 0.53 16 3 N -0.45 -4.46 2.74 -113.97 -0.31 -4.78 16 4 C 0.17 1.85 12.57 -89.93 -1.13 0.72 16 5 N -0.48 -6.96 11.25 -10.84 -0.12 -7.08 16 6 C 0.00 -0.05 7.06 -83.05 -0.59 -0.64 16 7 C -0.01 -0.18 6.77 -81.83 -0.55 -0.74 16 8 C -0.06 -0.60 6.19 -27.71 -0.17 -0.77 16 9 C 0.13 1.51 6.29 -3.52 -0.02 1.48 16 10 N -1.01 -15.02 3.20 -114.36 -0.37 -15.39 16 11 S 2.59 48.90 4.48 -107.50 -0.48 48.42 16 12 O -0.96 -19.73 14.33 -57.54 -0.82 -20.56 16 13 O -0.96 -20.70 14.22 -57.54 -0.82 -21.51 16 14 C -0.58 -11.32 5.12 37.16 0.19 -11.13 16 15 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 16 C -0.16 -4.01 7.77 37.16 0.29 -3.72 16 17 C -0.16 -4.08 7.78 37.16 0.29 -3.79 16 18 C -0.50 -13.15 8.01 -34.44 -0.28 -13.43 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 21 N -0.88 -24.17 9.35 55.43 0.52 -23.65 16 22 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 C 0.20 2.98 6.82 -4.74 -0.03 2.94 16 27 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.31 8.13 -51.93 -0.42 -0.12 16 31 H 0.09 0.41 7.86 -51.93 -0.41 0.00 16 32 H 0.20 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.08 0.61 7.91 -51.93 -0.41 0.20 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.17 7.06 -51.93 -0.37 0.80 16 37 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 38 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 39 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 40 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 44 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 45 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 46 H 0.11 1.75 6.87 -51.93 -0.36 1.39 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -34.49 373.86 -10.97 -45.46 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.35 Total: 3.42 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -1.82 Total: -25.60 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.28 Total: -50.90 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.64 Total: -42.07 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 48.90 SS G_CDS: -0.48 Total: 48.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.49 -10.97 -45.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922029525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.820 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds