Wall clock time and date at job start Wed Apr 1 2020 00:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47475 * 2 1 4 4 C 1.35285 * 126.47224 * 264.97865 * 3 2 1 5 5 N 1.30767 * 108.76883 * 180.10864 * 4 3 2 6 6 C 1.33478 * 109.09659 * 0.02562 * 5 4 3 7 7 C 1.35036 * 108.13165 * 359.87297 * 6 5 4 8 8 C 1.50610 * 124.85099 * 180.22809 * 7 6 5 9 9 C 1.53421 * 108.80059 * 342.33531 * 8 7 6 10 10 N 1.47058 * 109.08442 * 45.07202 * 9 8 7 11 11 S 1.65601 * 120.80959 * 115.68291 * 10 9 8 12 12 O 1.42096 * 104.27550 * 333.92859 * 11 10 9 13 13 O 1.42097 * 104.27967 * 206.06703 * 11 10 9 14 14 C 1.81409 * 104.44942 * 89.99744 * 11 10 9 15 15 C 1.52999 * 109.46814 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47317 * 60.00042 * 15 14 11 17 17 C 1.52997 * 109.47269 * 299.99698 * 15 14 11 18 18 C 1.50706 * 109.46573 * 179.97438 * 15 14 11 19 19 H 1.07995 * 120.00167 * 359.72054 * 18 15 14 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 15 23 23 H 1.48492 * 109.47487 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47233 * 120.00158 * 22 20 18 25 25 H 1.48508 * 109.46883 * 239.99963 * 22 20 18 26 26 C 1.47404 * 118.38350 * 295.94985 * 10 9 8 27 27 H 1.09008 * 109.47121 * 299.99978 * 1 2 3 28 28 H 1.09004 * 109.46955 * 59.99958 * 1 2 3 29 29 H 1.09001 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46875 * 239.99672 * 2 1 3 31 31 H 1.08999 * 109.46648 * 120.00417 * 2 1 3 32 32 H 1.07998 * 125.61853 * 0.09769 * 4 3 2 33 33 H 1.09001 * 109.58349 * 222.54721 * 8 7 6 34 34 H 1.09000 * 109.69748 * 102.19915 * 8 7 6 35 35 H 1.08998 * 109.53850 * 285.19132 * 9 8 7 36 36 H 1.09001 * 109.53619 * 164.94798 * 9 8 7 37 37 H 1.09000 * 109.47067 * 60.00006 * 14 11 10 38 38 H 1.09001 * 109.46593 * 300.00012 * 14 11 10 39 39 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 40 40 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 41 41 H 1.08996 * 109.46952 * 59.99813 * 16 15 14 42 42 H 1.09000 * 109.47140 * 300.00547 * 17 15 14 43 43 H 1.09001 * 109.47230 * 59.99691 * 17 15 14 44 44 H 1.09001 * 109.47375 * 180.02562 * 17 15 14 45 45 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.89718 * 163.46983 * 26 10 9 47 47 H 1.08999 * 109.89417 * 284.58984 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3763 2.1076 -1.0837 5 7 2.7610 3.2929 -0.6874 6 6 2.6637 3.3617 0.6421 7 6 2.1985 2.1763 1.0913 8 6 1.9420 1.8448 2.5379 9 6 2.6881 2.8569 3.4169 10 7 2.4713 4.2097 2.8825 11 16 1.6549 5.3492 3.7642 12 8 0.8095 4.5915 4.6187 13 8 1.1122 6.2262 2.7866 14 6 2.9449 6.1876 4.7254 15 6 2.3088 7.2761 5.5922 16 6 1.2942 6.6411 6.5452 17 6 1.5993 8.2925 4.6953 18 6 3.3804 7.9721 6.3911 19 1 4.4114 7.6655 6.2940 20 6 3.0439 8.9969 7.2499 21 7 1.7877 9.3667 7.3722 22 14 4.3723 9.8602 8.2397 23 1 5.6935 9.2605 7.9238 24 1 4.3880 11.3042 7.8934 25 1 4.0912 9.7017 9.6893 26 6 2.9932 4.5249 1.5405 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 2.3489 1.7650 -2.1076 33 1 2.3034 0.8390 2.7518 34 1 0.8730 1.9004 2.7436 35 1 3.7540 2.6291 3.4107 36 1 2.3085 2.8031 4.4373 37 1 3.6680 6.6396 4.0464 38 1 3.4501 5.4635 5.3646 39 1 0.8414 7.4166 7.1630 40 1 0.5191 6.1374 5.9677 41 1 1.7997 5.9170 7.1841 42 1 2.3221 8.7449 4.0163 43 1 0.8242 7.7888 4.1177 44 1 1.1465 9.0683 5.3128 45 1 1.5510 10.0874 7.9767 46 1 2.5201 5.4309 1.1618 47 1 4.0738 4.6605 1.5851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922029525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:31 Heat of formation + Delta-G solvation = -27.862374 kcal Electronic energy + Delta-G solvation = -29080.595878 eV Core-core repulsion = 25197.919282 eV Total energy + Delta-G solvation = -3882.676596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.25043 -38.31631 -38.18119 -38.05712 -36.86410 -35.99350 -33.61857 -32.72139 -31.00688 -30.41851 -28.31725 -27.68328 -27.24175 -25.98782 -24.65322 -24.21483 -21.63187 -21.29979 -20.75645 -19.32156 -18.73534 -18.00598 -17.79485 -17.10277 -17.00653 -16.64975 -16.60235 -15.90776 -15.52173 -15.32750 -15.09636 -14.79128 -14.67727 -14.55752 -14.41544 -14.10395 -13.82158 -13.71752 -13.67758 -13.30640 -13.10750 -13.00827 -12.94679 -12.89948 -12.74644 -12.55172 -12.45801 -12.24703 -12.17392 -12.12400 -12.05484 -11.93849 -11.55705 -11.37012 -10.92862 -10.65176 -10.49523 -10.41158 -10.03053 -9.11587 -8.02035 -6.20599 -0.67244 1.04091 1.44012 1.47061 1.56771 1.71491 1.88327 2.10605 2.45376 2.91144 3.16293 3.21406 3.56652 3.62133 3.76800 3.82918 4.00790 4.08288 4.14332 4.17045 4.29527 4.33980 4.41037 4.47148 4.57290 4.59966 4.61319 4.70610 4.77730 4.84386 4.87673 4.88210 4.99222 5.01662 5.08820 5.19546 5.22499 5.37108 5.39899 5.49943 5.57661 5.66118 5.72443 5.98196 6.12580 6.35158 6.35438 6.84533 7.12428 7.47749 8.98088 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.002864 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.587286 B = 9775.827202 C = 9976.658111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 N -0.447 5.447 4 C 0.178 3.822 5 N -0.523 5.523 6 C -0.041 4.041 7 C -0.018 4.018 8 C -0.054 4.054 9 C 0.115 3.885 10 N -1.002 6.002 11 S 2.611 3.389 12 O -0.981 6.981 13 O -0.992 6.992 14 C -0.582 4.582 15 C 0.069 3.931 16 C -0.159 4.159 17 C -0.161 4.161 18 C -0.516 4.516 19 H 0.064 0.936 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.955 3.045 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.283 1.283 26 C 0.202 3.798 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.242 0.758 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.039 0.961 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.261 0.739 46 H 0.086 0.914 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -23.029 -13.546 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.129 5.129 4 C -0.103 4.103 5 N -0.242 5.242 6 C -0.172 4.172 7 C -0.135 4.135 8 C -0.094 4.094 9 C -0.010 4.010 10 N -0.839 5.839 11 S 2.711 3.289 12 O -0.971 6.971 13 O -0.982 6.982 14 C -0.715 4.715 15 C 0.067 3.933 16 C -0.217 4.217 17 C -0.218 4.218 18 C -0.555 4.555 19 H 0.082 0.918 20 C -0.183 4.183 21 N -0.547 5.547 22 Si 0.781 3.219 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.209 1.209 26 C 0.076 3.924 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.143 0.857 31 H 0.124 0.876 32 H 0.258 0.742 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.682 -22.322 -14.013 26.410 hybrid contribution 0.584 0.512 1.093 1.341 sum 2.267 -21.810 -12.920 25.451 Atomic orbital electron populations 1.22156 0.94140 1.04290 1.02045 1.22220 0.95574 0.77847 1.06885 1.45489 1.47858 1.13701 1.05888 1.25674 1.02339 0.87322 0.94978 1.69857 1.22409 1.20631 1.11301 1.20566 1.09186 0.96312 0.91125 1.20969 1.08408 0.92620 0.91534 1.20486 1.01466 1.01157 0.86304 1.21703 1.02393 0.79134 0.97739 1.57761 1.75204 1.24428 1.26547 1.04915 0.76529 0.73470 0.74031 1.93485 1.64507 1.70351 1.68741 1.93489 1.77476 1.67234 1.60014 1.30497 1.16776 1.11311 1.12921 1.17934 0.93883 0.89952 0.91547 1.22197 0.98437 1.00062 1.00979 1.22215 0.99136 1.02079 0.98415 1.21332 0.93529 1.17121 1.23489 0.91760 1.25688 0.97269 0.97535 0.97764 1.69954 1.17661 1.29328 1.37796 0.85551 0.79863 0.78165 0.78315 1.18884 1.21088 1.20869 1.19539 0.99847 0.94625 0.78439 0.93793 0.92587 0.88027 0.85686 0.87573 0.74242 0.86326 0.90893 0.87865 0.87659 0.84695 0.84045 0.91125 0.94967 0.93738 0.94220 0.95123 0.91020 0.92948 0.89589 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 71.98 0.74 -0.70 16 2 C 0.10 0.70 6.71 86.38 0.58 1.28 16 3 N -0.45 -7.65 2.74 -514.49 -1.41 -9.06 16 4 C 0.18 3.46 12.57 180.11 2.26 5.72 16 5 N -0.52 -14.88 11.25 -188.21 -2.12 -16.99 16 6 C -0.04 -1.19 7.06 41.55 0.29 -0.90 16 7 C -0.02 -0.42 6.77 41.11 0.28 -0.14 16 8 C -0.05 -1.03 6.19 29.96 0.19 -0.84 16 9 C 0.12 2.46 6.29 86.41 0.54 3.01 16 10 N -1.00 -28.92 3.20 -515.71 -1.65 -30.57 16 11 S 2.61 98.24 4.48 -56.49 -0.25 97.99 16 12 O -0.98 -40.08 14.33 -127.65 -1.83 -41.91 16 13 O -0.99 -43.90 14.22 -127.65 -1.82 -45.71 16 14 C -0.58 -22.24 5.12 71.98 0.37 -21.87 16 15 C 0.07 3.35 0.52 -52.93 -0.03 3.33 16 16 C -0.16 -7.88 7.77 71.98 0.56 -7.32 16 17 C -0.16 -8.18 7.78 71.98 0.56 -7.62 16 18 C -0.52 -26.93 8.01 25.60 0.21 -26.73 16 19 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 20 C 0.02 0.89 5.15 84.66 0.44 1.32 16 21 N -0.91 -50.67 9.35 21.45 0.20 -50.47 16 22 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 C 0.20 5.87 6.82 85.44 0.58 6.46 16 27 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.13 0.21 8.13 -2.39 -0.02 0.19 16 31 H 0.11 0.49 7.86 -2.39 -0.02 0.47 16 32 H 0.24 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.12 1.32 7.91 -2.39 -0.02 1.30 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.11 2.19 7.06 -2.39 -0.02 2.18 16 37 H 0.13 4.68 8.14 -2.39 -0.02 4.66 16 38 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 39 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 40 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 41 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 44 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 45 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.09 2.86 6.87 -2.39 -0.02 2.84 16 47 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -76.48 373.86 1.68 -74.80 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.96 Total: 22.60 kcal Atomic # 6 Polarization: -52.57 SS G_CDS: 7.57 Total: -45.00 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -4.98 Total: -107.09 kcal Atomic # 8 Polarization: -83.98 SS G_CDS: -3.64 Total: -87.62 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 98.24 SS G_CDS: -0.25 Total: 97.99 kcal Total: -76.48 1.68 -74.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922029525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.936 kcal (2) G-P(sol) polarization free energy of solvation -76.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds