Wall clock time and date at job start Wed Apr 1 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81397 * 109.47236 * 2 1 4 4 C 1.81390 * 107.17085 * 64.65963 * 3 2 1 5 5 O 1.42102 * 113.53884 * 298.45466 * 3 2 1 6 6 N 1.49359 * 107.52091 * 180.02562 * 3 2 1 7 7 C 1.32424 * 119.99708 * 179.97438 * 6 3 2 8 8 O 1.21543 * 120.00071 * 359.97438 * 7 6 3 9 9 C 1.50700 * 119.99872 * 179.97438 * 7 6 3 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 C 1.39875 * 126.03800 * 269.69242 * 11 10 9 13 13 C 1.50700 * 125.89889 * 359.97438 * 12 11 10 14 14 N 1.30835 * 108.19969 * 179.82023 * 12 11 10 15 15 N 1.40086 * 108.20944 * 0.43355 * 14 12 11 16 16 C 1.46495 * 126.04225 * 179.73996 * 15 14 12 17 17 C 1.50690 * 109.47400 * 269.98131 * 16 15 14 18 18 H 1.08004 * 120.00399 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00252 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99472 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00135 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47148 * 89.99886 * 21 19 17 23 23 H 1.48494 * 109.47261 * 209.99934 * 21 19 17 24 24 H 1.48501 * 109.47055 * 329.99790 * 21 19 17 25 25 C 1.34954 * 107.91886 * 359.72236 * 15 14 12 26 26 C 1.50705 * 126.12030 * 179.97438 * 25 15 14 27 27 H 1.08992 * 109.47231 * 300.00569 * 1 2 3 28 28 H 1.09006 * 109.47231 * 60.00244 * 1 2 3 29 29 H 1.08997 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47446 * 239.99456 * 2 1 3 31 31 H 1.09006 * 109.47231 * 119.99756 * 2 1 3 32 32 H 1.09002 * 109.47494 * 173.80611 * 4 3 2 33 33 H 1.09005 * 109.47126 * 293.80440 * 4 3 2 34 34 H 1.09004 * 109.47235 * 53.79769 * 4 3 2 35 35 H 1.09004 * 109.46932 * 300.00370 * 9 7 6 36 36 H 1.08997 * 109.47392 * 59.99708 * 9 7 6 37 37 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 38 38 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 39 39 H 1.09004 * 109.46949 * 90.00173 * 13 12 11 40 40 H 1.08999 * 109.47109 * 210.00489 * 13 12 11 41 41 H 1.08995 * 109.47299 * 330.00448 * 13 12 11 42 42 H 1.09006 * 109.46532 * 29.98030 * 16 15 14 43 43 H 1.09003 * 109.47125 * 149.97640 * 16 15 14 44 44 H 0.97000 * 119.99820 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47455 * 270.02547 * 26 25 15 46 46 H 1.09000 * 109.47357 * 30.03371 * 26 25 15 47 47 H 1.09007 * 109.46282 * 150.02955 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 1.6138 2.4623 1.5663 5 8 1.7386 2.4522 -1.1454 6 7 3.6274 1.6594 -0.0006 7 6 4.3281 2.7830 -0.0013 8 8 3.7565 3.8557 -0.0018 9 6 5.8342 2.7317 -0.0013 10 6 6.3930 4.1560 -0.0015 11 6 7.8991 4.1047 -0.0009 12 6 8.7214 4.0830 1.1305 13 6 8.2541 4.1075 2.5630 14 7 9.9660 4.0345 0.7302 15 7 9.9756 4.0338 -0.6707 16 6 11.1654 3.9927 -1.5244 17 6 11.6219 5.3984 -1.8180 18 1 11.0798 6.2387 -1.4098 19 6 12.7318 5.6122 -2.6078 20 7 13.3922 4.5891 -3.1044 21 14 13.2972 7.3548 -2.9722 22 1 14.2619 7.7902 -1.9307 23 1 13.9546 7.3938 -4.3031 24 1 12.1245 8.2658 -2.9726 25 6 8.6952 4.0773 -1.0947 26 6 8.2346 4.0931 -2.5295 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0511 3.4569 1.6550 33 1 0.5268 2.5401 1.5883 34 1 1.9505 1.8420 2.3970 35 1 6.1799 2.2062 0.8889 36 1 6.1798 2.2053 -0.8910 37 1 6.0473 4.6818 -0.8915 38 1 6.0474 4.6820 0.8885 39 1 8.1061 3.0863 2.9144 40 1 9.0046 4.5995 3.1816 41 1 7.3136 4.6543 2.6291 42 1 11.9613 3.4516 -1.0126 43 1 10.9245 3.4862 -2.4591 44 1 14.1727 4.7394 -3.6603 45 1 8.1588 5.1239 -2.8755 46 1 8.9527 3.5542 -3.1477 47 1 7.2590 3.6125 -2.6031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925856290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:54 Heat of formation + Delta-G solvation = 23.226576 kcal Electronic energy + Delta-G solvation = -27348.940671 eV Core-core repulsion = 23468.479458 eV Total energy + Delta-G solvation = -3880.461213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.50031 -39.62876 -36.69670 -34.32960 -34.12742 -33.41634 -33.20254 -32.39372 -30.18767 -29.80872 -28.87321 -26.78844 -25.77989 -25.07683 -23.85932 -22.23193 -20.59260 -18.67995 -18.53285 -18.43439 -17.01192 -16.88274 -16.70277 -16.62283 -15.57979 -15.36373 -14.99331 -14.67668 -14.37959 -14.10590 -13.97849 -13.89976 -13.62561 -13.34188 -13.17295 -12.98221 -12.81945 -12.47093 -12.45687 -12.39410 -12.28166 -12.18520 -11.84135 -11.67778 -11.50529 -11.31744 -11.25027 -11.12081 -10.89244 -10.73729 -10.53573 -10.22260 -10.09360 -9.85632 -9.82022 -9.65458 -9.48124 -8.58770 -8.06591 -7.34017 -6.20277 -4.27127 -1.09162 1.90039 2.51009 2.79403 2.89494 3.26022 3.31814 3.36867 3.49179 3.53313 3.69727 3.72605 3.94531 4.26960 4.33061 4.35145 4.41770 4.69485 4.82967 5.03231 5.13062 5.15714 5.27215 5.41394 5.44412 5.59005 5.63567 5.79771 5.93952 5.97635 6.04018 6.16354 6.19727 6.20412 6.36605 6.48498 6.49613 6.66426 6.68804 6.99233 7.12607 7.22033 7.63155 7.73056 7.95738 8.07649 8.16589 8.75939 8.84450 9.38867 10.87257 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.002138 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.944841 B =13093.085290 C =13513.298299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.495 4.495 3 S 2.284 3.716 4 C -0.628 4.628 5 O -0.922 6.922 6 N -1.124 6.124 7 C 0.548 3.452 8 O -0.575 6.575 9 C -0.102 4.102 10 C -0.018 4.018 11 C -0.265 4.265 12 C 0.050 3.950 13 C -0.064 4.064 14 N -0.298 5.298 15 N -0.326 5.326 16 C 0.257 3.743 17 C -0.533 4.533 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.893 5.893 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.093 3.907 26 C -0.087 4.087 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.267 0.733 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.447 -12.756 9.435 32.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.632 4.632 3 S 2.481 3.519 4 C -0.783 4.783 5 O -0.908 6.908 6 N -1.033 6.033 7 C 0.336 3.664 8 O -0.456 6.456 9 C -0.145 4.145 10 C -0.057 4.057 11 C -0.277 4.277 12 C -0.115 4.115 13 C -0.122 4.122 14 N -0.122 5.122 15 N -0.106 5.106 16 C 0.139 3.861 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.038 4.038 26 C -0.145 4.145 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.106 -12.297 8.843 31.050 hybrid contribution -0.481 1.042 -0.059 1.149 sum -27.587 -11.254 8.783 31.062 Atomic orbital electron populations 1.21829 0.89864 1.06368 1.04180 1.28985 1.05850 1.14398 1.13990 1.13519 0.78441 0.79513 0.80396 1.30079 1.12184 1.15294 1.20726 1.93553 1.85304 1.67381 1.44517 1.70789 1.19874 1.43864 1.68819 1.20227 0.93034 0.81748 0.71368 1.90835 1.72608 1.32417 1.49712 1.21429 0.88418 0.99916 1.04757 1.19517 0.89410 0.94124 1.02639 1.19365 0.95187 1.21840 0.91314 1.21923 0.90935 1.02674 0.95927 1.20015 1.00702 1.01782 0.89727 1.77243 1.19704 1.24828 0.90465 1.49210 1.06172 1.51442 1.03760 1.19633 0.79742 0.98853 0.87833 1.21319 1.12619 0.91560 1.31681 0.91816 1.24933 0.95786 0.97960 0.95196 1.69922 1.19236 1.30229 1.33676 0.86353 0.78960 0.83707 0.77656 1.20355 1.20916 1.19670 1.20774 0.85510 1.01224 0.96282 1.20358 1.00999 1.03159 0.89967 0.90698 0.90080 0.88401 0.82828 0.83244 0.83718 0.85872 0.85033 0.88731 0.88889 0.91495 0.91493 0.91578 0.91675 0.91308 0.93117 0.93104 0.92326 0.90514 0.90973 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.08 9.88 37.15 0.37 0.29 16 2 C -0.49 -0.84 6.80 37.15 0.25 -0.59 16 3 S 2.28 17.25 3.90 -107.50 -0.42 16.83 16 4 C -0.63 -2.98 10.33 101.05 1.04 -1.94 16 5 O -0.92 -12.33 17.28 -51.83 -0.90 -13.23 16 6 N -1.12 -12.76 10.20 30.51 0.31 -12.45 16 7 C 0.55 8.16 7.37 -12.02 -0.09 8.07 16 8 O -0.58 -9.94 13.99 -11.27 -0.16 -10.10 16 9 C -0.10 -1.49 5.76 -27.89 -0.16 -1.65 16 10 C -0.02 -0.29 4.41 -27.89 -0.12 -0.41 16 11 C -0.26 -5.15 5.35 -105.05 -0.56 -5.71 16 12 C 0.05 1.00 7.22 -82.40 -0.59 0.41 16 13 C -0.06 -0.96 10.26 36.01 0.37 -0.59 16 14 N -0.30 -7.16 12.58 33.67 0.42 -6.74 16 15 N -0.33 -7.99 3.60 -58.32 -0.21 -8.20 16 16 C 0.26 6.84 6.00 -5.20 -0.03 6.81 16 17 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 18 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 19 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 21 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.09 1.99 6.93 -82.26 -0.57 1.42 16 26 C -0.09 -1.57 9.72 36.01 0.35 -1.22 16 27 H 0.07 -0.11 7.68 -51.93 -0.40 -0.51 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.15 0.21 8.14 -51.92 -0.42 -0.21 16 31 H 0.15 -0.17 8.14 -51.92 -0.42 -0.59 16 32 H 0.14 1.12 7.07 -51.92 -0.37 0.76 16 33 H 0.12 0.22 7.85 -51.92 -0.41 -0.19 16 34 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.07 1.15 7.73 -51.93 -0.40 0.75 16 38 H 0.07 1.06 7.20 -51.93 -0.37 0.69 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.90 7.25 -51.93 -0.38 0.53 16 42 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.05 1.34 7.05 -51.93 -0.37 0.97 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.07 1.32 7.08 -51.93 -0.37 0.95 16 47 H 0.07 1.12 7.77 -51.93 -0.40 0.71 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -40.66 402.93 -6.99 -47.65 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.66 Total: -2.68 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.17 Total: -8.92 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 1.26 Total: -52.39 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.05 Total: -23.33 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 17.25 SS G_CDS: -0.42 Total: 16.83 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -40.66 -6.99 -47.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925856290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.874 kcal (2) G-P(sol) polarization free energy of solvation -40.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds