Wall clock time and date at job start Wed Apr 1 2020 01:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81397 * 109.47236 * 2 1 4 4 C 1.81390 * 107.17085 * 64.65963 * 3 2 1 5 5 O 1.42102 * 113.53884 * 298.45466 * 3 2 1 6 6 N 1.49359 * 107.52091 * 180.02562 * 3 2 1 7 7 C 1.32424 * 119.99708 * 179.97438 * 6 3 2 8 8 O 1.21543 * 120.00071 * 359.97438 * 7 6 3 9 9 C 1.50700 * 119.99872 * 179.97438 * 7 6 3 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 C 1.39875 * 126.03800 * 269.69242 * 11 10 9 13 13 C 1.50700 * 125.89889 * 359.97438 * 12 11 10 14 14 N 1.30835 * 108.19969 * 179.82023 * 12 11 10 15 15 N 1.40086 * 108.20944 * 0.43355 * 14 12 11 16 16 C 1.46495 * 126.04225 * 179.73996 * 15 14 12 17 17 C 1.50690 * 109.47400 * 269.98131 * 16 15 14 18 18 H 1.08004 * 120.00399 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00252 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99472 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00135 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47148 * 89.99886 * 21 19 17 23 23 H 1.48494 * 109.47261 * 209.99934 * 21 19 17 24 24 H 1.48501 * 109.47055 * 329.99790 * 21 19 17 25 25 C 1.34954 * 107.91886 * 359.72236 * 15 14 12 26 26 C 1.50705 * 126.12030 * 179.97438 * 25 15 14 27 27 H 1.08992 * 109.47231 * 300.00569 * 1 2 3 28 28 H 1.09006 * 109.47231 * 60.00244 * 1 2 3 29 29 H 1.08997 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47446 * 239.99456 * 2 1 3 31 31 H 1.09006 * 109.47231 * 119.99756 * 2 1 3 32 32 H 1.09002 * 109.47494 * 173.80611 * 4 3 2 33 33 H 1.09005 * 109.47126 * 293.80440 * 4 3 2 34 34 H 1.09004 * 109.47235 * 53.79769 * 4 3 2 35 35 H 1.09004 * 109.46932 * 300.00370 * 9 7 6 36 36 H 1.08997 * 109.47392 * 59.99708 * 9 7 6 37 37 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 38 38 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 39 39 H 1.09004 * 109.46949 * 90.00173 * 13 12 11 40 40 H 1.08999 * 109.47109 * 210.00489 * 13 12 11 41 41 H 1.08995 * 109.47299 * 330.00448 * 13 12 11 42 42 H 1.09006 * 109.46532 * 29.98030 * 16 15 14 43 43 H 1.09003 * 109.47125 * 149.97640 * 16 15 14 44 44 H 0.97000 * 119.99820 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47455 * 270.02547 * 26 25 15 46 46 H 1.09000 * 109.47357 * 30.03371 * 26 25 15 47 47 H 1.09007 * 109.46282 * 150.02955 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 1.6138 2.4623 1.5663 5 8 1.7386 2.4522 -1.1454 6 7 3.6274 1.6594 -0.0006 7 6 4.3281 2.7830 -0.0013 8 8 3.7565 3.8557 -0.0018 9 6 5.8342 2.7317 -0.0013 10 6 6.3930 4.1560 -0.0015 11 6 7.8991 4.1047 -0.0009 12 6 8.7214 4.0830 1.1305 13 6 8.2541 4.1075 2.5630 14 7 9.9660 4.0345 0.7302 15 7 9.9756 4.0338 -0.6707 16 6 11.1654 3.9927 -1.5244 17 6 11.6219 5.3984 -1.8180 18 1 11.0798 6.2387 -1.4098 19 6 12.7318 5.6122 -2.6078 20 7 13.3922 4.5891 -3.1044 21 14 13.2972 7.3548 -2.9722 22 1 14.2619 7.7902 -1.9307 23 1 13.9546 7.3938 -4.3031 24 1 12.1245 8.2658 -2.9726 25 6 8.6952 4.0773 -1.0947 26 6 8.2346 4.0931 -2.5295 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0511 3.4569 1.6550 33 1 0.5268 2.5401 1.5883 34 1 1.9505 1.8420 2.3970 35 1 6.1799 2.2062 0.8889 36 1 6.1798 2.2053 -0.8910 37 1 6.0473 4.6818 -0.8915 38 1 6.0474 4.6820 0.8885 39 1 8.1061 3.0863 2.9144 40 1 9.0046 4.5995 3.1816 41 1 7.3136 4.6543 2.6291 42 1 11.9613 3.4516 -1.0126 43 1 10.9245 3.4862 -2.4591 44 1 14.1727 4.7394 -3.6603 45 1 8.1588 5.1239 -2.8755 46 1 8.9527 3.5542 -3.1477 47 1 7.2590 3.6125 -2.6031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925856290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:53 Heat of formation + Delta-G solvation = -7.297541 kcal Electronic energy + Delta-G solvation = -27350.264296 eV Core-core repulsion = 23468.479458 eV Total energy + Delta-G solvation = -3881.784838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15008 -40.68336 -37.44412 -36.11123 -34.87223 -34.34709 -34.19356 -34.17702 -31.73918 -30.50251 -30.23962 -28.23867 -27.61638 -25.76754 -24.95630 -23.93170 -21.57849 -20.29593 -20.13026 -19.15999 -18.82127 -17.94742 -17.47923 -17.33847 -17.17958 -16.30217 -16.21136 -16.16763 -15.62243 -15.25132 -14.73793 -14.65891 -14.46144 -14.31725 -14.13382 -14.09295 -13.95972 -13.77486 -13.57260 -13.53128 -13.35352 -13.23908 -13.13748 -12.95526 -12.82232 -12.70592 -12.63814 -12.57644 -12.38624 -12.23389 -11.83967 -11.77356 -11.70764 -11.19521 -10.96108 -10.85741 -10.75859 -10.64573 -9.83135 -9.01810 -8.35112 -6.52886 -1.51721 1.16430 1.26779 1.35025 1.35797 1.47568 1.71295 1.93168 1.94726 2.14020 2.32803 2.93875 3.06837 3.56893 3.79655 3.83251 3.90856 3.96033 4.07257 4.10845 4.25505 4.31886 4.37079 4.43026 4.57833 4.64338 4.69469 4.72020 4.73582 4.80678 4.85993 4.87885 4.90056 4.94474 4.99739 5.02071 5.14055 5.20388 5.31646 5.45927 5.50066 5.55614 5.57188 5.79947 6.06420 6.30873 6.61647 7.04755 7.10979 7.18106 8.71010 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.002138 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.944841 B =13093.085290 C =13513.298299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.448 4.448 3 S 2.246 3.754 4 C -0.608 4.608 5 O -0.996 6.996 6 N -1.139 6.139 7 C 0.540 3.460 8 O -0.614 6.614 9 C -0.101 4.101 10 C -0.009 4.009 11 C -0.257 4.257 12 C 0.055 3.945 13 C -0.062 4.062 14 N -0.347 5.347 15 N -0.355 5.355 16 C 0.275 3.725 17 C -0.553 4.553 18 H 0.046 0.954 19 C 0.020 3.980 20 N -0.918 5.918 21 Si 0.973 3.027 22 H -0.273 1.273 23 H -0.268 1.268 24 H -0.271 1.271 25 C 0.075 3.925 26 C -0.082 4.082 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.161 0.839 31 H 0.193 0.807 32 H 0.113 0.887 33 H 0.158 0.842 34 H 0.170 0.830 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.045 0.955 44 H 0.274 0.726 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.348 -14.273 11.325 36.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.588 4.588 3 S 2.450 3.550 4 C -0.765 4.765 5 O -0.982 6.982 6 N -1.045 6.045 7 C 0.328 3.672 8 O -0.498 6.498 9 C -0.143 4.143 10 C -0.048 4.048 11 C -0.269 4.269 12 C -0.109 4.109 13 C -0.120 4.120 14 N -0.170 5.170 15 N -0.135 5.135 16 C 0.156 3.844 17 C -0.591 4.591 18 H 0.065 0.935 19 C -0.180 4.180 20 N -0.556 5.556 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.193 1.193 24 H -0.196 1.196 25 C -0.054 4.054 26 C -0.141 4.141 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.143 0.857 30 H 0.179 0.821 31 H 0.211 0.789 32 H 0.132 0.868 33 H 0.177 0.823 34 H 0.188 0.812 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -29.992 -13.830 10.709 34.720 hybrid contribution 0.175 1.346 -0.514 1.451 sum -29.817 -12.484 10.195 33.895 Atomic orbital electron populations 1.22097 0.88310 1.08116 1.05020 1.28923 1.06604 1.06702 1.16522 1.14388 0.77017 0.83064 0.80487 1.29828 1.14302 1.13885 1.18461 1.93500 1.85689 1.71309 1.47743 1.70458 1.22884 1.42574 1.68572 1.20194 0.93298 0.82330 0.71360 1.90810 1.73307 1.33746 1.51928 1.21319 0.89359 0.98363 1.05274 1.19457 0.87140 0.95717 1.02495 1.19724 0.96527 1.20100 0.90532 1.22801 0.89822 0.99906 0.98409 1.20223 1.01566 1.03913 0.86342 1.77179 1.22111 1.27348 0.90392 1.48992 1.06352 1.54105 1.04061 1.19135 0.80121 0.97595 0.87568 1.21425 1.13353 0.91838 1.32480 0.93532 1.25774 0.95495 1.02194 0.94586 1.70004 1.19562 1.32246 1.33807 0.85334 0.78421 0.78490 0.78109 1.19820 1.19277 1.19601 1.21400 0.84746 1.01094 0.98192 1.20412 1.02040 1.03349 0.88255 0.88082 0.91445 0.85714 0.82149 0.78936 0.86796 0.82347 0.81163 0.87221 0.89356 0.92644 0.90632 0.88919 0.91407 0.89030 0.96099 0.93693 0.91704 0.90517 0.91603 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.65 9.88 71.98 0.71 1.36 16 2 C -0.45 0.43 6.80 71.98 0.49 0.92 16 3 S 2.25 30.73 3.90 -56.49 -0.22 30.51 16 4 C -0.61 -3.95 10.33 113.37 1.17 -2.78 16 5 O -1.00 -27.74 17.28 -133.11 -2.30 -30.04 16 6 N -1.14 -25.01 10.20 -176.97 -1.80 -26.81 16 7 C 0.54 16.19 7.37 88.02 0.65 16.84 16 8 O -0.61 -21.93 13.99 12.02 0.17 -21.76 16 9 C -0.10 -2.93 5.76 29.85 0.17 -2.75 16 10 C -0.01 -0.29 4.41 29.85 0.13 -0.16 16 11 C -0.26 -10.09 5.35 -20.14 -0.11 -10.20 16 12 C 0.06 2.23 7.22 43.10 0.31 2.55 16 13 C -0.06 -1.75 10.26 71.24 0.73 -1.02 16 14 N -0.35 -17.18 12.58 -47.38 -0.60 -17.77 16 15 N -0.35 -18.21 3.60 -338.41 -1.22 -19.42 16 16 C 0.28 15.49 6.00 85.63 0.51 16.00 16 17 C -0.55 -32.79 9.39 25.60 0.24 -32.55 16 18 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 19 C 0.02 1.17 5.46 84.66 0.46 1.63 16 20 N -0.92 -54.01 13.29 21.45 0.28 -53.72 16 21 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 C 0.08 3.33 6.93 41.40 0.29 3.61 16 26 C -0.08 -3.09 9.72 71.24 0.69 -2.40 16 27 H 0.10 -0.86 7.68 -2.39 -0.02 -0.87 16 28 H 0.07 0.00 8.14 -2.38 -0.02 -0.02 16 29 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H 0.16 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.19 -1.71 8.14 -2.39 -0.02 -1.73 16 32 H 0.11 1.66 7.07 -2.39 -0.02 1.65 16 33 H 0.16 -0.09 7.85 -2.39 -0.02 -0.11 16 34 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.11 2.76 8.14 -2.38 -0.02 2.75 16 36 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 37 H 0.05 1.95 7.73 -2.38 -0.02 1.93 16 38 H 0.08 2.35 7.20 -2.38 -0.02 2.33 16 39 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.09 2.18 7.25 -2.39 -0.02 2.16 16 42 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.05 2.52 7.05 -2.39 -0.02 2.51 16 44 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 45 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.07 2.52 7.08 -2.39 -0.02 2.50 16 47 H 0.10 3.10 7.77 -2.38 -0.02 3.08 16 Total: -1.00 -96.53 402.93 3.75 -92.78 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.95 Total: 8.00 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 6.45 Total: -8.96 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -3.33 Total: -117.73 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.13 Total: -51.80 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 30.73 SS G_CDS: -0.22 Total: 30.51 kcal Total: -96.53 3.75 -92.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925856290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.479 kcal (2) G-P(sol) polarization free energy of solvation -96.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds