Wall clock time and date at job start Wed Apr 1 2020 01:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29105 * 126.00129 * 2 1 4 4 N 1.29024 * 110.25628 * 179.89255 * 3 2 1 5 5 C 1.32913 * 108.63431 * 359.97438 * 4 3 2 6 6 C 1.34390 * 126.00837 * 179.97438 * 2 1 3 7 7 C 1.50532 * 129.25459 * 0.19368 * 6 2 1 8 8 C 1.53434 * 108.35851 * 163.55534 * 7 6 2 9 9 H 1.09000 * 109.45597 * 289.71220 * 8 7 6 10 10 N 1.46498 * 109.46251 * 169.75969 * 8 7 6 11 11 C 1.34774 * 120.00555 * 154.99891 * 10 8 7 12 12 O 1.21583 * 119.99363 * 0.02562 * 11 10 8 13 13 N 1.34772 * 120.00591 * 180.02562 * 11 10 8 14 14 C 1.39238 * 120.00158 * 174.85580 * 13 11 10 15 15 C 1.39474 * 119.83607 * 325.32614 * 14 13 11 16 16 C 1.36379 * 120.16989 * 179.76033 * 15 14 13 17 17 C 1.40866 * 119.82480 * 0.49081 * 16 15 14 18 18 C 1.41163 * 120.16143 * 179.74061 * 17 16 15 19 19 H 1.07998 * 119.99516 * 205.37570 * 18 17 16 20 20 C 1.39888 * 120.00016 * 25.37355 * 18 17 16 21 21 N 1.30882 * 119.99997 * 16.81433 * 20 18 17 22 22 Si 1.86799 * 120.00140 * 196.82079 * 20 18 17 23 23 H 1.48499 * 109.47387 * 89.99592 * 22 20 18 24 24 H 1.48504 * 109.46983 * 210.00163 * 22 20 18 25 25 H 1.48500 * 109.46815 * 329.99569 * 22 20 18 26 26 C 1.40864 * 119.67737 * 359.76609 * 17 16 15 27 27 C 1.36378 * 119.82667 * 359.97438 * 26 17 16 28 28 C 1.53208 * 109.50054 * 49.70686 * 8 7 6 29 29 C 1.50592 * 129.16340 * 180.22867 * 5 4 3 30 30 H 1.09000 * 109.47272 * 270.04114 * 1 2 3 31 31 H 1.09008 * 109.47338 * 30.04120 * 1 2 3 32 32 H 1.09005 * 109.47120 * 150.04239 * 1 2 3 33 33 H 1.09006 * 109.69498 * 283.27953 * 7 6 2 34 34 H 1.09000 * 109.69819 * 43.82518 * 7 6 2 35 35 H 0.96999 * 119.99687 * 335.00379 * 10 8 7 36 36 H 0.97004 * 119.99336 * 354.85940 * 13 11 10 37 37 H 1.07997 * 119.91639 * 0.02562 * 15 14 13 38 38 H 1.07996 * 120.08519 * 180.25802 * 16 15 14 39 39 H 0.96997 * 119.99886 * 179.97438 * 21 20 18 40 40 H 1.07997 * 120.09120 * 180.02562 * 26 17 16 41 41 H 1.07999 * 119.91730 * 180.02562 * 27 26 17 42 42 H 1.09007 * 109.44261 * 169.91121 * 28 8 7 43 43 H 1.09004 * 109.43830 * 49.97381 * 28 8 7 44 44 H 1.09004 * 109.68953 * 283.10434 * 29 5 4 45 45 H 1.09005 * 109.69233 * 43.63807 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2239 1.0445 0.0000 4 7 3.4657 0.6943 0.0023 5 6 3.5327 -0.6331 0.0044 6 6 2.2551 -1.0871 0.0005 7 6 1.8722 -2.5429 -0.0028 8 6 3.1011 -3.3649 -0.4130 9 1 3.3146 -3.1968 -1.4685 10 7 2.8330 -4.7879 -0.1903 11 6 3.4982 -5.7186 -0.9029 12 8 4.3212 -5.3772 -1.7302 13 7 3.2513 -7.0276 -0.6984 14 6 3.8581 -7.9852 -1.5069 15 6 4.0902 -7.7095 -2.8543 16 6 4.6885 -8.6406 -3.6512 17 6 5.0628 -9.8872 -3.1126 18 6 5.6776 -10.8582 -3.9323 19 1 5.5984 -11.9055 -3.6809 20 6 6.3893 -10.4638 -5.0702 21 7 6.7691 -9.2187 -5.2056 22 14 6.7974 -11.7142 -6.3966 23 1 5.7016 -11.7490 -7.3982 24 1 8.0669 -11.3306 -7.0648 25 1 6.9482 -13.0572 -5.7811 26 6 4.8202 -10.1604 -1.7522 27 6 4.2259 -9.2174 -0.9664 28 6 4.3080 -2.9343 0.4268 29 6 4.7468 -1.5241 0.0121 30 1 -0.3634 0.0007 1.0276 31 1 -0.3634 0.8897 -0.5145 32 1 -0.3634 -0.8904 -0.5132 33 1 1.5480 -2.8398 0.9947 34 1 1.0646 -2.7088 -0.7159 35 1 2.1767 -5.0602 0.4699 36 1 2.6507 -7.3026 0.0120 37 1 3.7994 -6.7546 -3.2666 38 1 4.8714 -8.4241 -4.6933 39 1 7.2629 -8.9453 -5.9945 40 1 5.1048 -11.1138 -1.3322 41 1 4.0395 -9.4251 0.0769 42 1 5.1296 -3.6323 0.2659 43 1 4.0340 -2.9332 1.4819 44 1 5.1859 -1.5551 -0.9851 45 1 5.4785 -1.1416 0.7238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927848952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:22 Heat of formation + Delta-G solvation = 90.538726 kcal Electronic energy + Delta-G solvation = -28420.615747 eV Core-core repulsion = 24439.922208 eV Total energy + Delta-G solvation = -3980.693540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.66505 -40.07684 -38.03089 -36.90378 -35.29032 -34.40028 -33.59499 -32.78323 -30.84901 -29.68691 -29.41970 -28.60750 -28.04588 -25.02553 -24.18114 -22.92085 -21.77096 -21.39960 -21.01202 -20.20912 -19.82279 -18.00092 -17.43829 -17.28460 -17.14551 -16.54768 -15.57995 -15.15014 -15.02899 -14.55280 -14.29073 -14.23906 -14.18028 -13.91203 -13.86571 -13.63921 -13.17795 -13.03609 -12.67901 -12.37193 -12.29835 -12.04777 -11.88168 -11.78671 -11.51965 -11.43651 -11.18786 -11.10926 -10.90455 -10.79921 -10.49965 -10.23999 -9.96637 -9.87717 -9.53955 -9.25678 -9.11907 -8.96819 -8.69462 -7.50012 -6.96841 -6.70013 -4.26393 1.26213 1.98386 2.31388 2.68051 2.91594 3.08929 3.09590 3.12860 3.17278 3.68405 3.91293 3.95888 4.11715 4.27650 4.42616 4.47834 4.58600 4.62312 4.68146 4.78375 4.80557 4.98590 5.13462 5.17825 5.34284 5.53138 5.63627 5.72821 5.82173 5.93219 6.00201 6.11736 6.16134 6.24798 6.38743 6.54906 6.80911 6.83268 7.07117 7.13152 7.30880 7.35932 7.63695 7.86234 8.02174 8.08201 8.25575 8.29077 8.48367 8.65983 8.91652 8.94483 9.12153 10.22857 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022445 B = 0.002025 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.219538 B =13821.607088 C =14314.785102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.284 5.284 3 N -0.098 5.098 4 N -0.261 5.261 5 C -0.011 4.011 6 C -0.018 4.018 7 C -0.049 4.049 8 C 0.174 3.826 9 H 0.097 0.903 10 N -0.749 5.749 11 C 0.694 3.306 12 O -0.570 6.570 13 N -0.666 5.666 14 C 0.013 3.987 15 C -0.085 4.085 16 C -0.154 4.154 17 C 0.104 3.896 18 C -0.460 4.460 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.790 5.790 22 Si 0.908 3.092 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.214 4.214 27 C -0.107 4.107 28 C -0.130 4.130 29 C -0.032 4.032 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.391 0.609 36 H 0.390 0.610 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.281 0.719 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.539 12.854 11.357 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.075 5.075 4 N -0.126 5.126 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.088 4.088 8 C 0.067 3.933 9 H 0.115 0.885 10 N -0.406 5.406 11 C 0.395 3.605 12 O -0.446 6.446 13 N -0.312 5.312 14 C -0.079 4.079 15 C -0.106 4.106 16 C -0.174 4.174 17 C 0.101 3.899 18 C -0.490 4.490 19 H 0.096 0.904 20 C -0.144 4.144 21 N -0.415 5.415 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.235 4.235 27 C -0.127 4.127 28 C -0.169 4.169 29 C -0.071 4.071 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.223 0.777 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.642 14.929 10.399 22.155 hybrid contribution -0.648 -1.729 0.156 1.853 sum -13.291 13.199 10.555 21.500 Atomic orbital electron populations 1.22281 0.72798 1.06049 1.05034 1.46810 1.09127 1.04582 1.47126 1.78592 0.96211 1.11214 1.21527 1.74821 1.09441 1.12037 1.16267 1.21815 0.95151 0.91295 1.06818 1.21525 0.91272 0.91774 1.10682 1.20337 0.99086 0.86214 1.03212 1.20629 0.92454 0.78676 1.01543 0.88507 1.45084 1.46035 1.05000 1.44438 1.15986 0.81582 0.81032 0.81917 1.90968 1.36227 1.80132 1.37229 1.42097 1.49052 1.03566 1.36520 1.16945 1.10983 0.89724 0.90258 1.20419 1.00044 0.98443 0.91657 1.20989 1.01869 0.94760 0.99787 1.17662 0.88949 0.92528 0.90714 1.19532 1.28344 0.94735 1.06381 0.90442 1.25928 0.94002 0.95865 0.98643 1.69862 1.27101 1.17618 1.26891 0.86315 0.78358 0.81378 0.80658 1.19326 1.20349 1.18675 1.20533 1.09413 0.99314 0.94206 1.20020 1.01440 0.94025 0.97251 1.22087 0.99144 0.95951 0.99756 1.19941 0.92322 0.91192 1.03688 0.88964 0.87894 0.88274 0.89193 0.89452 0.77536 0.77747 0.88106 0.86265 0.90820 0.88689 0.89309 0.89421 0.91490 0.89245 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.27 59.85 0.67 0.98 16 2 N -0.28 -2.63 3.73 -64.00 -0.24 -2.87 16 3 N -0.10 -1.24 13.19 60.35 0.80 -0.44 16 4 N -0.26 -3.68 12.40 33.16 0.41 -3.26 16 5 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 6 C -0.02 -0.17 6.76 -82.50 -0.56 -0.73 16 7 C -0.05 -0.34 5.44 -27.74 -0.15 -0.49 16 8 C 0.17 1.76 2.43 -67.60 -0.16 1.59 16 9 H 0.10 1.25 7.55 -51.93 -0.39 0.86 16 10 N -0.75 -8.02 5.09 -58.35 -0.30 -8.32 16 11 C 0.69 11.49 8.24 -86.92 -0.72 10.77 16 12 O -0.57 -12.29 13.74 5.29 0.07 -12.21 16 13 N -0.67 -11.03 5.31 -14.10 -0.07 -11.10 16 14 C 0.01 0.29 6.27 -83.57 -0.52 -0.23 16 15 C -0.09 -2.10 8.57 -39.79 -0.34 -2.44 16 16 C -0.15 -4.10 8.63 -39.26 -0.34 -4.44 16 17 C 0.10 2.77 5.57 -106.80 -0.59 2.18 16 18 C -0.46 -12.17 9.04 -37.85 -0.34 -12.51 16 19 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 20 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 21 N -0.79 -20.89 10.94 55.54 0.61 -20.28 16 22 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 26 C -0.21 -5.14 9.74 -39.26 -0.38 -5.52 16 27 C -0.11 -2.30 9.90 -39.79 -0.39 -2.69 16 28 C -0.13 -1.32 5.47 -26.42 -0.14 -1.47 16 29 C -0.03 -0.33 6.30 -27.73 -0.17 -0.51 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.10 0.17 7.71 -51.93 -0.40 -0.23 16 33 H 0.09 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.09 0.49 7.87 -51.93 -0.41 0.08 16 35 H 0.39 2.78 8.62 -40.82 -0.35 2.42 16 36 H 0.39 4.80 8.83 -40.82 -0.36 4.44 16 37 H 0.10 2.49 6.48 -52.49 -0.34 2.15 16 38 H 0.12 3.30 6.18 -52.49 -0.32 2.98 16 39 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.09 1.09 8.13 -51.92 -0.42 0.67 16 43 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -34.90 373.71 -8.88 -43.78 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -5.93 Total: 9.81 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -4.83 Total: -14.45 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 1.20 Total: -46.28 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.90 -8.88 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927848952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.322 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds