Wall clock time and date at job start Wed Apr 1 2020 01:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.29112 * 126.01084 * 2 1 4 4 N 1.29017 * 110.25917 * 180.02562 * 3 2 1 5 5 C 1.32912 * 108.63690 * 0.02779 * 4 3 2 6 6 C 1.34401 * 126.00805 * 179.97438 * 2 1 3 7 7 C 1.50534 * 129.24919 * 359.77058 * 6 2 1 8 8 C 1.53438 * 108.32226 * 196.56384 * 7 6 2 9 9 H 1.09004 * 109.44583 * 70.29689 * 8 7 6 10 10 N 1.46495 * 109.45834 * 190.25718 * 8 7 6 11 11 C 1.34777 * 120.00123 * 205.07981 * 10 8 7 12 12 O 1.21579 * 119.99975 * 0.02562 * 11 10 8 13 13 N 1.34781 * 120.00212 * 180.02562 * 11 10 8 14 14 C 1.39244 * 119.99861 * 184.76677 * 13 11 10 15 15 C 1.39478 * 119.83108 * 213.55219 * 14 13 11 16 16 C 1.36370 * 120.17119 * 179.97438 * 15 14 13 17 17 C 1.40867 * 119.82596 * 0.02562 * 16 15 14 18 18 C 1.41162 * 120.16269 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99867 * 333.33683 * 18 17 16 20 20 C 1.39891 * 120.00130 * 153.34447 * 18 17 16 21 21 N 1.30877 * 119.99809 * 330.42381 * 20 18 17 22 22 Si 1.86799 * 119.99887 * 150.42502 * 20 18 17 23 23 H 1.48500 * 109.47035 * 180.02562 * 22 20 18 24 24 H 1.48496 * 109.47185 * 59.99945 * 22 20 18 25 25 H 1.48496 * 109.47298 * 299.99703 * 22 20 18 26 26 C 1.40868 * 119.67611 * 0.25392 * 17 16 15 27 27 C 1.36380 * 119.82052 * 359.48442 * 26 17 16 28 28 C 1.53110 * 109.55086 * 310.28257 * 8 7 6 29 29 C 1.50596 * 129.16246 * 179.89412 * 5 4 3 30 30 H 1.09002 * 109.46934 * 90.02135 * 1 2 3 31 31 H 1.08998 * 109.47294 * 210.02425 * 1 2 3 32 32 H 1.09002 * 109.47001 * 330.02621 * 1 2 3 33 33 H 1.08995 * 109.69213 * 76.85863 * 7 6 2 34 34 H 1.09000 * 109.69723 * 316.27082 * 7 6 2 35 35 H 0.96999 * 120.00229 * 25.08499 * 10 8 7 36 36 H 0.96994 * 119.99618 * 4.76308 * 13 11 10 37 37 H 1.08009 * 119.91324 * 0.02562 * 15 14 13 38 38 H 1.07999 * 120.08836 * 180.02562 * 16 15 14 39 39 H 0.96993 * 120.00390 * 353.61176 * 21 20 18 40 40 H 1.07996 * 120.08788 * 179.73038 * 26 17 16 41 41 H 1.08007 * 119.90834 * 180.25256 * 27 26 17 42 42 H 1.09005 * 109.45289 * 190.10140 * 28 8 7 43 43 H 1.08994 * 109.45049 * 310.05720 * 28 8 7 44 44 H 1.08997 * 109.69197 * 76.76168 * 29 5 4 45 45 H 1.09005 * 109.69109 * 316.18605 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6942 -0.0005 5 6 3.5327 -0.6333 -0.0015 6 6 2.2552 -1.0872 0.0005 7 6 1.8721 -2.5430 0.0058 8 6 3.1009 -3.3636 0.4194 9 1 3.3125 -3.1932 1.4750 10 7 2.8339 -4.7870 0.1987 11 6 3.4974 -5.7161 0.9151 12 8 4.3171 -5.3728 1.7448 13 7 3.2522 -7.0257 0.7118 14 6 3.8630 -7.9819 1.5189 15 6 4.2151 -9.2202 0.9823 16 6 4.8141 -10.1616 1.7663 17 6 5.0767 -9.8808 3.1215 18 6 5.6960 -10.8502 3.9397 19 1 5.5890 -11.8998 3.7087 20 6 6.4481 -10.4514 5.0497 21 7 7.0654 -9.2974 5.0415 22 14 6.5715 -11.5661 6.5436 23 1 7.4195 -10.9180 7.5761 24 1 7.1783 -12.8617 6.1457 25 1 5.2142 -11.8044 7.0969 26 6 4.7129 -8.6300 3.6578 27 6 4.1193 -7.6967 2.8599 28 6 4.3087 -2.9353 -0.4185 29 6 4.7468 -1.5243 -0.0046 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 1.5498 -2.8416 -0.9917 34 1 1.0638 -2.7076 0.7183 35 1 2.1797 -5.0609 -0.4630 36 1 2.6501 -7.3020 0.0033 37 1 4.0135 -9.4339 -0.0571 38 1 5.0865 -11.1199 1.3494 39 1 7.0788 -8.7603 4.2340 40 1 4.9071 -8.4093 4.6970 41 1 3.8435 -6.7358 3.2686 42 1 5.1300 -3.6331 -0.2546 43 1 4.0368 -2.9360 -1.4740 44 1 5.1840 -1.5528 0.9934 45 1 5.4796 -1.1442 -0.7164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927848953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:24 Heat of formation + Delta-G solvation = 83.433605 kcal Electronic energy + Delta-G solvation = -28462.493776 eV Core-core repulsion = 24481.492135 eV Total energy + Delta-G solvation = -3981.001641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.68925 -40.15305 -38.14174 -37.04149 -35.31763 -34.59463 -33.66242 -32.82712 -30.88040 -29.73022 -29.51409 -28.47237 -28.03438 -24.90438 -24.19657 -22.95361 -21.82203 -21.53008 -21.06237 -20.28703 -19.92874 -18.05277 -17.90491 -17.46520 -17.17780 -16.63193 -15.57478 -15.16758 -14.64722 -14.52508 -14.36117 -14.28366 -14.22727 -14.04726 -13.93597 -13.66984 -13.32089 -13.20223 -12.62985 -12.36901 -12.35607 -12.30670 -12.05868 -11.82718 -11.51916 -11.37962 -11.22459 -11.04667 -11.00690 -10.82923 -10.38757 -10.26479 -10.05244 -9.92912 -9.47701 -9.17550 -9.14728 -9.02476 -8.73378 -7.72630 -7.26058 -7.04103 -4.33636 1.23764 1.95969 2.28988 2.62464 2.86849 2.92810 3.17120 3.23619 3.38471 3.61940 3.88219 4.04737 4.08790 4.24429 4.39146 4.45562 4.54691 4.57192 4.59141 4.76061 4.77121 4.95192 5.10071 5.14497 5.31010 5.49949 5.51743 5.60812 5.79099 5.89871 5.96104 6.02997 6.08003 6.22338 6.25961 6.49321 6.66174 6.71473 6.93092 7.12541 7.15066 7.42383 7.68890 7.78116 7.83636 7.86912 8.22664 8.23268 8.31948 8.39866 8.75862 8.89315 9.03323 10.06158 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.002038 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.683701 B =13737.139981 C =14205.264599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.284 5.284 3 N -0.097 5.097 4 N -0.261 5.261 5 C -0.011 4.011 6 C -0.018 4.018 7 C -0.049 4.049 8 C 0.173 3.827 9 H 0.097 0.903 10 N -0.749 5.749 11 C 0.694 3.306 12 O -0.572 6.572 13 N -0.665 5.665 14 C -0.001 4.001 15 C -0.095 4.095 16 C -0.218 4.218 17 C 0.093 3.907 18 C -0.525 4.525 19 H 0.076 0.924 20 C 0.040 3.960 21 N -0.787 5.787 22 Si 1.062 2.938 23 H -0.274 1.274 24 H -0.276 1.276 25 H -0.274 1.274 26 C -0.209 4.209 27 C -0.065 4.065 28 C -0.130 4.130 29 C -0.032 4.032 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.390 0.610 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.300 0.700 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.933 12.670 -11.715 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.075 5.075 4 N -0.125 5.125 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.088 4.088 8 C 0.067 3.933 9 H 0.115 0.885 10 N -0.405 5.405 11 C 0.395 3.605 12 O -0.448 6.448 13 N -0.311 5.311 14 C -0.093 4.093 15 C -0.115 4.115 16 C -0.238 4.238 17 C 0.090 3.910 18 C -0.553 4.553 19 H 0.094 0.906 20 C -0.183 4.183 21 N -0.409 5.409 22 Si 0.886 3.114 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.229 4.229 27 C -0.086 4.086 28 C -0.169 4.169 29 C -0.071 4.071 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.223 0.777 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.535 14.557 -9.383 21.380 hybrid contribution -1.591 -1.137 -2.426 3.116 sum -14.126 13.420 -11.809 22.784 Atomic orbital electron populations 1.22283 0.72779 1.06057 1.05043 1.46819 1.09134 1.04574 1.47117 1.78595 0.96199 1.11207 1.21482 1.74820 1.09450 1.12016 1.16253 1.21809 0.95133 0.91309 1.06838 1.21519 0.91278 0.91761 1.10724 1.20336 0.99053 0.86243 1.03212 1.20624 0.92511 0.78619 1.01563 0.88507 1.45079 1.46231 1.05036 1.44150 1.15980 0.81549 0.81022 0.81940 1.90953 1.36552 1.80104 1.37226 1.42055 1.48821 1.03525 1.36679 1.16833 1.12254 0.89843 0.90409 1.20067 1.00358 0.93752 0.97328 1.20498 1.09886 0.99375 0.94061 1.17691 0.90170 0.92072 0.91086 1.20468 1.29345 0.95428 1.10057 0.90631 1.27002 0.91712 0.97576 1.01984 1.70451 1.27055 1.10207 1.33153 0.83689 0.77743 0.75227 0.74783 1.19896 1.20167 1.19992 1.20774 1.07333 0.95884 0.98868 1.20358 0.98531 0.98044 0.91624 1.22074 0.99088 0.95980 0.99789 1.19946 0.92346 0.91164 1.03683 0.88952 0.88283 0.87874 0.89178 0.89442 0.77497 0.77685 0.89158 0.88616 0.88683 0.87825 0.87755 0.89459 0.91458 0.89236 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.27 59.85 0.67 0.97 16 2 N -0.28 -2.60 3.73 -64.00 -0.24 -2.84 16 3 N -0.10 -1.23 13.19 60.35 0.80 -0.43 16 4 N -0.26 -3.65 12.40 33.16 0.41 -3.24 16 5 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 6 C -0.02 -0.18 6.76 -82.50 -0.56 -0.73 16 7 C -0.05 -0.33 5.45 -27.74 -0.15 -0.48 16 8 C 0.17 1.73 2.43 -67.65 -0.16 1.56 16 9 H 0.10 1.23 7.55 -51.93 -0.39 0.84 16 10 N -0.75 -7.88 5.08 -58.40 -0.30 -8.18 16 11 C 0.69 11.31 8.25 -86.91 -0.72 10.59 16 12 O -0.57 -12.11 13.65 5.30 0.07 -12.04 16 13 N -0.66 -10.85 5.32 -14.10 -0.07 -10.92 16 14 C 0.00 -0.02 6.29 -83.57 -0.53 -0.55 16 15 C -0.09 -2.01 9.89 -39.79 -0.39 -2.41 16 16 C -0.22 -5.22 9.74 -39.26 -0.38 -5.60 16 17 C 0.09 2.45 5.23 -106.80 -0.56 1.89 16 18 C -0.53 -13.91 8.92 -37.85 -0.34 -14.25 16 19 H 0.08 1.94 7.99 -52.49 -0.42 1.52 16 20 C 0.04 1.03 4.80 -17.34 -0.08 0.95 16 21 N -0.79 -21.31 12.42 55.54 0.69 -20.62 16 22 Si 1.06 21.61 30.02 -169.99 -5.10 16.51 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 C -0.21 -5.46 8.09 -39.26 -0.32 -5.78 16 27 C -0.07 -1.58 8.57 -39.79 -0.34 -1.92 16 28 C -0.13 -1.30 5.47 -26.45 -0.14 -1.44 16 29 C -0.03 -0.33 6.30 -27.71 -0.17 -0.50 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.10 0.17 7.71 -51.93 -0.40 -0.23 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.42 8.13 -51.93 -0.42 0.00 16 34 H 0.09 0.48 7.87 -51.93 -0.41 0.08 16 35 H 0.39 2.72 8.62 -40.82 -0.35 2.37 16 36 H 0.39 4.74 8.83 -40.82 -0.36 4.38 16 37 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 39 H 0.30 8.46 7.15 -40.82 -0.29 8.17 16 40 H 0.10 2.82 6.77 -52.49 -0.36 2.47 16 41 H 0.10 2.54 6.39 -52.48 -0.34 2.20 16 42 H 0.09 1.07 8.13 -51.93 -0.42 0.65 16 43 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -34.69 373.64 -8.79 -43.48 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.91 Total: 11.05 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -4.77 Total: -18.41 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 1.29 Total: -46.23 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.07 Total: -12.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.10 Total: 16.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.69 -8.79 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927848953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.912 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds