Wall clock time and date at job start Wed Apr 1 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47462 * 2 1 4 4 C 1.46504 * 119.99800 * 270.00170 * 3 2 1 5 5 C 1.50705 * 109.46826 * 269.99485 * 4 3 2 6 6 H 1.08005 * 119.99765 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00070 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00330 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46629 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47112 * 119.99929 * 9 7 5 12 12 H 1.48494 * 109.47027 * 240.00167 * 9 7 5 13 13 C 1.34778 * 120.00209 * 89.99454 * 3 2 1 14 14 O 1.21287 * 119.99804 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00140 * 0.02562 * 13 3 2 16 16 N 1.46892 * 109.47397 * 179.97438 * 15 13 3 17 17 O 1.46304 * 110.99720 * 66.04724 * 16 15 13 18 18 C 1.42905 * 113.99907 * 243.95230 * 17 16 15 19 19 C 1.46899 * 111.00159 * 189.99825 * 16 15 13 20 20 H 1.08997 * 109.46968 * 60.00752 * 19 16 15 21 21 C 1.52995 * 109.47269 * 300.00329 * 19 16 15 22 22 C 1.50706 * 109.47185 * 179.97438 * 19 16 15 23 23 C 1.33637 * 122.75269 * 204.73430 * 22 19 16 24 24 S 1.76198 * 107.92471 * 179.97438 * 23 22 19 25 25 C 1.70975 * 90.28283 * 0.27467 * 24 23 22 26 26 C 1.50700 * 124.91732 * 179.83901 * 25 24 23 27 27 N 1.29026 * 110.16666 * 359.84331 * 25 24 23 28 28 H 1.09001 * 109.47495 * 300.00546 * 1 2 3 29 29 H 1.09007 * 109.46807 * 60.00274 * 1 2 3 30 30 H 1.08996 * 109.47674 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47109 * 239.99638 * 2 1 3 32 32 H 1.08999 * 109.46865 * 120.00046 * 2 1 3 33 33 H 1.08996 * 109.47080 * 29.99600 * 4 3 2 34 34 H 1.09002 * 109.47603 * 150.00200 * 4 3 2 35 35 H 0.97001 * 120.00134 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.46981 * 59.99663 * 15 13 3 37 37 H 1.09005 * 109.47161 * 300.00166 * 15 13 3 38 38 H 1.09001 * 109.47103 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47187 * 300.00152 * 18 17 16 40 40 H 1.09001 * 109.46558 * 60.00200 * 18 17 16 41 41 H 1.08999 * 109.47123 * 179.97438 * 21 19 16 42 42 H 1.09000 * 109.46963 * 299.99571 * 21 19 16 43 43 H 1.08994 * 109.47201 * 60.00312 * 21 19 16 44 44 H 1.08001 * 126.03288 * 0.03782 * 23 22 19 45 45 H 1.09008 * 109.46931 * 270.00498 * 26 25 24 46 46 H 1.08997 * 109.47339 * 29.99845 * 26 25 24 47 47 H 1.08991 * 109.47232 * 150.00108 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2300 -1.0961 7 6 4.1493 2.3894 -2.8779 8 7 3.3493 3.1254 -3.6181 9 14 5.9133 2.0952 -3.4175 10 1 6.6009 1.2403 -2.4168 11 1 5.9203 1.4159 -4.7380 12 1 6.6211 3.3961 -3.5263 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2059 3.5888 17 8 1.3881 3.3406 3.6273 18 6 2.0138 4.6063 3.4068 19 6 2.3076 1.4811 4.8665 20 1 3.0525 0.6860 4.8351 21 6 0.9235 0.8743 5.1051 22 6 2.6384 2.4346 5.9858 23 6 3.1727 2.0334 7.1431 24 16 3.3966 3.4555 8.1589 25 6 2.7420 4.4472 6.9295 26 6 2.5679 5.9409 7.0274 27 7 2.4185 3.7315 5.9058 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1410 -1.1385 35 1 3.6752 3.5152 -4.4444 36 1 2.6227 0.4187 2.5299 37 1 0.9443 1.0115 2.5302 38 1 1.2630 5.3953 3.4505 39 1 2.7671 4.7781 4.1757 40 1 2.4884 4.6109 2.4256 41 1 0.9213 0.3361 6.0530 42 1 0.1787 1.6695 5.1366 43 1 0.6848 0.1846 4.2956 44 1 3.4239 1.0170 7.4084 45 1 1.5855 6.1657 7.4427 46 1 3.3399 6.3549 7.6759 47 1 2.6523 6.3823 6.0344 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931539312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:51 Heat of formation + Delta-G solvation = 36.225796 kcal Electronic energy + Delta-G solvation = -28827.374347 eV Core-core repulsion = 24947.476822 eV Total energy + Delta-G solvation = -3879.897525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21346 -38.99725 -36.83114 -35.13937 -34.42897 -32.81599 -32.21307 -30.20048 -29.95937 -28.21794 -27.46178 -26.05995 -25.44672 -23.86190 -22.96492 -22.27688 -21.24870 -19.71623 -18.37936 -17.83763 -16.61036 -16.45300 -16.23292 -15.46527 -15.30353 -15.07310 -14.81200 -14.60846 -14.28432 -13.90775 -13.90609 -13.50952 -13.37938 -13.33443 -13.23329 -12.72153 -12.57213 -12.48438 -12.33556 -12.27603 -11.98817 -11.81576 -11.66685 -11.49503 -11.26256 -11.11788 -10.85886 -10.83679 -10.67809 -10.49087 -10.07487 -9.58789 -9.52950 -9.49938 -9.05071 -8.87450 -8.58633 -8.39104 -8.28249 -7.55322 -5.99468 -4.03658 0.60405 1.25408 1.59955 2.65921 3.04414 3.32599 3.40179 3.44127 3.57720 3.93715 3.97709 4.48288 4.59651 4.79657 4.96874 5.06243 5.09401 5.14991 5.25499 5.28110 5.33198 5.36348 5.39396 5.48399 5.54538 5.63784 5.67156 5.70607 5.80573 5.83960 6.04757 6.08076 6.11516 6.26872 6.37312 6.52013 6.54824 6.75560 6.81303 7.17811 7.51552 7.54648 7.68182 7.76883 7.98387 8.29912 8.52742 8.97999 9.27595 9.61667 11.08517 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.002968 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.732092 B = 9432.206173 C =10229.653276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.249 3.751 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.512 3.488 14 O -0.518 6.518 15 C 0.023 3.977 16 N -0.344 5.344 17 O -0.230 6.230 18 C 0.042 3.958 19 C 0.144 3.856 20 H 0.109 0.891 21 C -0.175 4.175 22 C 0.096 3.904 23 C -0.263 4.263 24 S 0.094 5.906 25 C 0.047 3.953 26 C -0.077 4.077 27 N -0.430 5.430 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.175 0.825 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 -3.938 23.644 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.130 3.870 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.298 3.702 14 O -0.394 6.394 15 C -0.109 4.109 16 N -0.110 5.110 17 O -0.236 6.236 18 C -0.055 4.055 19 C 0.033 3.967 20 H 0.127 0.873 21 C -0.234 4.234 22 C -0.037 4.037 23 C -0.402 4.402 24 S 0.348 5.652 25 C -0.232 4.232 26 C -0.138 4.138 27 N -0.144 5.144 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.192 0.808 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.857 -2.559 23.966 24.409 hybrid contribution 0.136 -1.230 -0.944 1.556 sum -3.721 -3.788 23.022 23.626 Atomic orbital electron populations 1.22231 0.96950 1.01255 1.02349 1.21382 0.93396 0.84456 1.02441 1.48223 1.64415 1.13148 1.07611 1.19220 0.96090 0.93615 0.78061 1.21490 0.96982 1.31581 1.06058 0.92457 1.24932 0.97748 0.95016 0.96468 1.69946 1.35547 1.33673 1.14321 0.86463 0.84818 0.78024 0.78233 1.19829 1.21056 1.20934 1.19933 0.78781 0.87060 0.84415 1.90534 1.44668 1.17585 1.86566 1.22399 1.01668 0.95625 0.91165 1.67288 1.39666 1.03566 1.00469 1.90543 1.25909 1.12563 1.94635 1.22834 0.98320 0.82321 1.02046 1.20605 0.97579 0.92192 0.86374 0.87325 1.22371 0.97371 1.01477 1.02160 1.19949 0.98840 0.90258 0.94633 1.26620 1.12197 1.03327 0.98076 1.83855 1.60129 0.99379 1.21853 1.27212 1.01608 1.02032 0.92310 1.20447 1.03035 0.85680 1.04617 1.66329 1.18180 1.04756 1.25127 0.93156 0.92031 0.92290 0.89984 0.92072 0.95205 0.93964 0.92865 0.87624 0.91181 0.91821 0.93285 0.90913 0.92051 0.91300 0.91534 0.80781 0.89718 0.90323 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.72 5.93 -4.05 -0.02 1.70 16 3 N -0.60 -12.81 2.46 -175.06 -0.43 -13.24 16 4 C 0.25 6.58 5.16 -5.19 -0.03 6.56 16 5 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.51 10.93 7.58 -10.99 -0.08 10.85 16 14 O -0.52 -13.17 12.41 -8.09 -0.10 -13.27 16 15 C 0.02 0.36 3.60 -4.98 -0.02 0.34 16 16 N -0.34 -5.68 4.30 -109.23 -0.47 -6.15 16 17 O -0.23 -4.20 8.68 -27.56 -0.24 -4.44 16 18 C 0.04 0.76 10.20 101.05 1.03 1.79 16 19 C 0.14 1.82 2.80 -68.87 -0.19 1.62 16 20 H 0.11 1.14 8.12 -51.93 -0.42 0.72 16 21 C -0.17 -1.87 8.72 37.15 0.32 -1.55 16 22 C 0.10 1.23 5.76 -84.22 -0.48 0.75 16 23 C -0.26 -2.68 11.14 29.12 0.32 -2.35 16 24 S 0.09 0.86 23.18 -107.50 -2.49 -1.63 16 25 C 0.05 0.53 7.39 -13.46 -0.10 0.43 16 26 C -0.08 -0.62 10.46 36.01 0.38 -0.25 16 27 N -0.43 -5.99 5.76 -8.06 -0.05 -6.04 16 28 H 0.05 0.68 7.22 -51.93 -0.38 0.30 16 29 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.11 1.40 7.32 -51.93 -0.38 1.02 16 37 H 0.07 1.00 5.93 -51.93 -0.31 0.70 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.85 5.97 -51.93 -0.31 0.54 16 40 H 0.07 1.58 5.18 -51.93 -0.27 1.31 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.89 7.76 -51.93 -0.40 0.49 16 43 H 0.07 0.65 6.63 -51.93 -0.34 0.30 16 44 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 390.07 15.07 5.88 5.88 Total: -1.00 -35.27 390.07 -8.39 -43.66 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.30 Total: -0.05 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 1.09 Total: 4.32 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.21 Total: -51.60 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.34 Total: -17.70 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.27 -8.39 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931539312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.888 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds