Wall clock time and date at job start Wed Apr 1 2020 01:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46507 * 109.46748 * 2 1 4 4 C 1.46499 * 119.99851 * 269.99871 * 3 2 1 5 5 C 1.50700 * 109.46908 * 270.00243 * 4 3 2 6 6 H 1.07998 * 119.99989 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99922 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00068 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00098 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46997 * 89.99550 * 9 7 5 11 11 H 1.48501 * 109.47072 * 209.99385 * 9 7 5 12 12 H 1.48504 * 109.47141 * 329.99530 * 9 7 5 13 13 C 1.34773 * 119.99860 * 89.99842 * 3 2 1 14 14 O 1.21284 * 119.99927 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00200 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47305 * 180.02562 * 15 13 3 17 17 O 1.46298 * 111.00403 * 66.04155 * 16 15 13 18 18 C 1.42897 * 113.99936 * 243.95988 * 17 16 15 19 19 C 1.46900 * 111.00208 * 189.99976 * 16 15 13 20 20 H 1.08994 * 109.46868 * 299.99886 * 19 16 15 21 21 C 1.53001 * 109.47051 * 59.99437 * 19 16 15 22 22 C 1.50699 * 109.47316 * 179.97438 * 19 16 15 23 23 C 1.33639 * 122.74928 * 155.00374 * 22 19 16 24 24 S 1.76196 * 107.92219 * 179.80073 * 23 22 19 25 25 C 1.70976 * 90.28393 * 0.28104 * 24 23 22 26 26 C 1.50706 * 124.91946 * 179.97438 * 25 24 23 27 27 N 1.29029 * 110.16913 * 359.70954 * 25 24 23 28 28 H 1.08994 * 109.47221 * 300.00121 * 1 2 3 29 29 H 1.08996 * 109.46706 * 60.00365 * 1 2 3 30 30 H 1.09000 * 109.46871 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47221 * 239.99879 * 2 1 3 32 32 H 1.09003 * 109.47059 * 119.99828 * 2 1 3 33 33 H 1.08999 * 109.46929 * 30.00185 * 4 3 2 34 34 H 1.08998 * 109.46841 * 150.00626 * 4 3 2 35 35 H 0.96998 * 120.00085 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47527 * 59.99877 * 15 13 3 37 37 H 1.09001 * 109.46668 * 299.99569 * 15 13 3 38 38 H 1.08996 * 109.46961 * 299.99467 * 18 17 16 39 39 H 1.08992 * 109.47746 * 59.99926 * 18 17 16 40 40 H 1.09006 * 109.46706 * 180.02562 * 18 17 16 41 41 H 1.09000 * 109.47340 * 60.00611 * 21 19 16 42 42 H 1.08995 * 109.46988 * 180.02562 * 21 19 16 43 43 H 1.08999 * 109.47437 * 300.00164 * 21 19 16 44 44 H 1.07994 * 126.03803 * 0.02562 * 23 22 19 45 45 H 1.08999 * 109.47015 * 269.69764 * 26 25 24 46 46 H 1.09000 * 109.46646 * 29.68916 * 26 25 24 47 47 H 1.09000 * 109.47248 * 149.69634 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1266 -3.6176 9 14 5.9138 2.0976 -3.4163 10 1 5.9777 0.8769 -4.2594 11 1 6.3927 3.2653 -4.1989 12 1 6.7737 1.9179 -2.2190 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3097 2.2063 3.5889 17 8 1.3861 3.3403 3.6270 18 6 2.0109 4.6064 3.4066 19 6 2.3066 1.4816 4.8667 20 1 1.3209 1.0485 5.0363 21 6 3.3531 0.3663 4.8230 22 6 2.6362 2.4354 5.9860 23 6 2.2513 2.2286 7.2489 24 16 2.8466 3.5702 8.2237 25 6 3.5466 4.2801 6.8347 26 6 4.3142 5.5769 6.8224 27 7 3.3272 3.5419 5.7994 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0955 3.1411 -1.1384 35 1 3.6754 3.5170 -4.4435 36 1 2.6228 0.4188 2.5299 37 1 0.9444 1.0115 2.5302 38 1 2.7637 4.7788 4.1756 39 1 2.4858 4.6114 2.4256 40 1 1.2595 5.3949 3.4509 41 1 4.3389 0.7993 4.6533 42 1 3.3505 -0.1717 5.7709 43 1 3.1151 -0.3237 4.0134 44 1 1.6799 1.3860 7.6091 45 1 3.6281 6.4035 6.6376 46 1 4.8028 5.7189 7.7863 47 1 5.0668 5.5462 6.0345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931539314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:53 Heat of formation + Delta-G solvation = 31.609264 kcal Electronic energy + Delta-G solvation = -28770.282934 eV Core-core repulsion = 24890.185221 eV Total energy + Delta-G solvation = -3880.097713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.20126 -39.00454 -36.82372 -35.13902 -34.61268 -32.81558 -32.25504 -30.20316 -29.96232 -28.21905 -27.63242 -26.22859 -25.20447 -23.89402 -22.96479 -22.29257 -21.15940 -19.71544 -18.38172 -17.89706 -16.61208 -16.43560 -16.23883 -15.92580 -15.32501 -15.17251 -14.63694 -14.49837 -14.35724 -14.09294 -13.89528 -13.51035 -13.43941 -13.22304 -13.04155 -12.90972 -12.60988 -12.47494 -12.30117 -12.22506 -11.96988 -11.87370 -11.62776 -11.45048 -11.36032 -11.13149 -10.88358 -10.85785 -10.67990 -10.47056 -10.07227 -9.70216 -9.56073 -9.51987 -9.12478 -8.84524 -8.63849 -8.38341 -8.32746 -7.55533 -5.98889 -4.03109 0.59772 1.24351 1.58790 2.69466 2.83958 3.33378 3.40133 3.44741 3.57307 3.92088 3.98949 4.49016 4.58239 4.84167 5.00106 5.04766 5.06296 5.13468 5.25328 5.27802 5.33832 5.36902 5.40521 5.46049 5.46974 5.65864 5.69105 5.71264 5.80896 5.84753 5.99443 6.04893 6.09021 6.25336 6.26968 6.45915 6.51712 6.73633 6.77505 7.17614 7.41742 7.52904 7.67617 7.77236 7.98835 8.30347 8.52576 8.98235 9.27601 9.62116 11.09098 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.003014 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.451109 B = 9289.062297 C =10146.472997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.250 3.750 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.513 3.487 14 O -0.517 6.517 15 C 0.018 3.982 16 N -0.332 5.332 17 O -0.251 6.251 18 C 0.027 3.973 19 C 0.145 3.855 20 H 0.063 0.937 21 C -0.143 4.143 22 C 0.098 3.902 23 C -0.263 4.263 24 S 0.095 5.905 25 C 0.049 3.951 26 C -0.078 4.078 27 N -0.433 5.433 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.174 0.826 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 -4.204 23.623 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.131 3.869 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.299 3.701 14 O -0.392 6.392 15 C -0.113 4.113 16 N -0.100 5.100 17 O -0.257 6.257 18 C -0.070 4.070 19 C 0.033 3.967 20 H 0.081 0.919 21 C -0.201 4.201 22 C -0.035 4.035 23 C -0.403 4.403 24 S 0.350 5.650 25 C -0.230 4.230 26 C -0.139 4.139 27 N -0.147 5.147 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.191 0.809 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.969 -2.817 23.952 24.300 hybrid contribution -0.094 -1.150 -0.973 1.509 sum -3.063 -3.967 22.980 23.520 Atomic orbital electron populations 1.22231 0.96957 1.01267 1.02337 1.21387 0.93399 0.84460 1.02434 1.48226 1.64444 1.13148 1.07605 1.19215 0.96095 0.93597 0.78033 1.21451 0.96963 1.31653 1.06092 0.92487 1.24930 0.97756 0.94982 0.96470 1.69936 1.35661 1.33591 1.14332 0.86517 0.84873 0.77589 0.78565 1.20737 1.21152 1.19872 1.19896 0.78808 0.87054 0.84366 1.90526 1.44584 1.17590 1.86528 1.22528 1.01509 0.95929 0.91325 1.67235 1.38848 1.03288 1.00612 1.90503 1.27182 1.13351 1.94690 1.23016 0.98337 0.81790 1.03890 1.20410 0.98682 0.90955 0.86652 0.91884 1.21943 0.99538 0.96188 1.02437 1.19891 0.96898 0.93535 0.93127 1.26626 1.11928 1.05297 0.96406 1.83837 1.49876 1.16163 1.15167 1.27178 1.02827 1.02123 0.90845 1.20458 0.99479 0.90021 1.03895 1.66113 1.14701 1.04147 1.29753 0.93183 0.92018 0.92270 0.89943 0.92108 0.95214 0.93980 0.92813 0.87003 0.91594 0.92391 0.89885 0.91859 0.90744 0.91244 0.91242 0.80858 0.89588 0.90315 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.11 1.73 5.93 -4.03 -0.02 1.71 16 3 N -0.60 -12.88 2.46 -175.05 -0.43 -13.31 16 4 C 0.25 6.61 5.16 -5.19 -0.03 6.58 16 5 C -0.52 -14.97 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.51 11.05 7.58 -10.99 -0.08 10.96 16 14 O -0.52 -13.23 12.41 -8.03 -0.10 -13.33 16 15 C 0.02 0.30 4.13 -4.97 -0.02 0.28 16 16 N -0.33 -5.61 4.00 -109.22 -0.44 -6.05 16 17 O -0.25 -4.73 9.89 -27.51 -0.27 -5.00 16 18 C 0.03 0.49 10.75 101.05 1.09 1.58 16 19 C 0.14 1.88 2.69 -68.86 -0.19 1.70 16 20 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 21 C -0.14 -1.51 8.97 37.16 0.33 -1.18 16 22 C 0.10 1.29 5.27 -84.22 -0.44 0.84 16 23 C -0.26 -2.74 11.14 29.12 0.32 -2.41 16 24 S 0.10 0.88 23.18 -107.50 -2.49 -1.61 16 25 C 0.05 0.56 7.39 -13.45 -0.10 0.46 16 26 C -0.08 -0.65 10.46 36.01 0.38 -0.27 16 27 N -0.43 -6.21 7.25 -8.05 -0.06 -6.26 16 28 H 0.05 0.68 7.22 -51.93 -0.38 0.30 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.11 1.53 5.09 -51.93 -0.26 1.26 16 37 H 0.07 0.96 7.19 -51.93 -0.37 0.59 16 38 H 0.06 1.02 5.63 -51.93 -0.29 0.73 16 39 H 0.08 1.82 5.18 -51.93 -0.27 1.56 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.65 6.20 -51.93 -0.32 0.33 16 44 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -35.52 391.85 -8.20 -43.72 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.23 Total: 0.38 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 1.20 Total: 4.65 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.19 Total: -51.84 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.37 Total: -18.33 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.52 -8.20 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931539314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.325 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds