Wall clock time and date at job start Wed Apr 1 2020 01:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46507 * 109.46748 * 2 1 4 4 C 1.46499 * 119.99851 * 269.99871 * 3 2 1 5 5 C 1.50700 * 109.46908 * 270.00243 * 4 3 2 6 6 H 1.07998 * 119.99989 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99922 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00068 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00098 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46997 * 89.99550 * 9 7 5 11 11 H 1.48501 * 109.47072 * 209.99385 * 9 7 5 12 12 H 1.48504 * 109.47141 * 329.99530 * 9 7 5 13 13 C 1.34773 * 119.99860 * 89.99842 * 3 2 1 14 14 O 1.21284 * 119.99927 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00200 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47305 * 180.02562 * 15 13 3 17 17 O 1.46298 * 111.00403 * 66.04155 * 16 15 13 18 18 C 1.42897 * 113.99936 * 243.95988 * 17 16 15 19 19 C 1.46900 * 111.00208 * 189.99976 * 16 15 13 20 20 H 1.08994 * 109.46868 * 299.99886 * 19 16 15 21 21 C 1.53001 * 109.47051 * 59.99437 * 19 16 15 22 22 C 1.50699 * 109.47316 * 179.97438 * 19 16 15 23 23 C 1.33639 * 122.74928 * 155.00374 * 22 19 16 24 24 S 1.76196 * 107.92219 * 179.80073 * 23 22 19 25 25 C 1.70976 * 90.28393 * 0.28104 * 24 23 22 26 26 C 1.50706 * 124.91946 * 179.97438 * 25 24 23 27 27 N 1.29029 * 110.16913 * 359.70954 * 25 24 23 28 28 H 1.08994 * 109.47221 * 300.00121 * 1 2 3 29 29 H 1.08996 * 109.46706 * 60.00365 * 1 2 3 30 30 H 1.09000 * 109.46871 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47221 * 239.99879 * 2 1 3 32 32 H 1.09003 * 109.47059 * 119.99828 * 2 1 3 33 33 H 1.08999 * 109.46929 * 30.00185 * 4 3 2 34 34 H 1.08998 * 109.46841 * 150.00626 * 4 3 2 35 35 H 0.96998 * 120.00085 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47527 * 59.99877 * 15 13 3 37 37 H 1.09001 * 109.46668 * 299.99569 * 15 13 3 38 38 H 1.08996 * 109.46961 * 299.99467 * 18 17 16 39 39 H 1.08992 * 109.47746 * 59.99926 * 18 17 16 40 40 H 1.09006 * 109.46706 * 180.02562 * 18 17 16 41 41 H 1.09000 * 109.47340 * 60.00611 * 21 19 16 42 42 H 1.08995 * 109.46988 * 180.02562 * 21 19 16 43 43 H 1.08999 * 109.47437 * 300.00164 * 21 19 16 44 44 H 1.07994 * 126.03803 * 0.02562 * 23 22 19 45 45 H 1.08999 * 109.47015 * 269.69764 * 26 25 24 46 46 H 1.09000 * 109.46646 * 29.68916 * 26 25 24 47 47 H 1.09000 * 109.47248 * 149.69634 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1266 -3.6176 9 14 5.9138 2.0976 -3.4163 10 1 5.9777 0.8769 -4.2594 11 1 6.3927 3.2653 -4.1989 12 1 6.7737 1.9179 -2.2190 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3097 2.2063 3.5889 17 8 1.3861 3.3403 3.6270 18 6 2.0109 4.6064 3.4066 19 6 2.3066 1.4816 4.8667 20 1 1.3209 1.0485 5.0363 21 6 3.3531 0.3663 4.8230 22 6 2.6362 2.4354 5.9860 23 6 2.2513 2.2286 7.2489 24 16 2.8466 3.5702 8.2237 25 6 3.5466 4.2801 6.8347 26 6 4.3142 5.5769 6.8224 27 7 3.3272 3.5419 5.7994 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0955 3.1411 -1.1384 35 1 3.6754 3.5170 -4.4435 36 1 2.6228 0.4188 2.5299 37 1 0.9444 1.0115 2.5302 38 1 2.7637 4.7788 4.1756 39 1 2.4858 4.6114 2.4256 40 1 1.2595 5.3949 3.4509 41 1 4.3389 0.7993 4.6533 42 1 3.3505 -0.1717 5.7709 43 1 3.1151 -0.3237 4.0134 44 1 1.6799 1.3860 7.6091 45 1 3.6281 6.4035 6.6376 46 1 4.8028 5.7189 7.7863 47 1 5.0668 5.5462 6.0345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931539314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:52 Heat of formation + Delta-G solvation = 8.172482 kcal Electronic energy + Delta-G solvation = -28771.299229 eV Core-core repulsion = 24890.185221 eV Total energy + Delta-G solvation = -3881.114008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13297 -40.55906 -38.08617 -36.79521 -35.82803 -34.89259 -33.24428 -31.66047 -31.09848 -29.38395 -28.92351 -27.80490 -26.45239 -25.27860 -24.46848 -23.68616 -22.21208 -20.54378 -19.92298 -19.03261 -18.55068 -17.87512 -17.67330 -17.12420 -16.74581 -16.37371 -16.07754 -15.97171 -15.60588 -15.38546 -15.01374 -14.77731 -14.60696 -14.45689 -14.20639 -14.02142 -13.91868 -13.76997 -13.46167 -13.28277 -13.20497 -13.04750 -12.97862 -12.90200 -12.66245 -12.57912 -12.47728 -12.43741 -12.16322 -11.93466 -11.82266 -11.68614 -10.89361 -10.62527 -10.40055 -10.32588 -10.11522 -9.65469 -9.51588 -9.35094 -8.20270 -6.34928 -0.18486 0.50712 0.79929 1.36164 1.39786 1.49830 1.53690 1.90077 1.93798 2.31629 2.46676 3.08853 3.19552 3.54811 3.73078 4.02464 4.05615 4.15009 4.23957 4.25541 4.33728 4.37482 4.45831 4.46553 4.64745 4.65949 4.68358 4.74201 4.80261 4.87188 4.92770 4.94819 4.98724 5.06578 5.07243 5.19107 5.22178 5.24863 5.36232 5.39208 5.62336 5.69173 5.93876 6.05909 6.10365 6.73731 6.86501 6.97651 7.32032 7.63096 8.86643 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.003014 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.451109 B = 9289.062297 C =10146.472997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.268 3.732 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.499 3.501 14 O -0.569 6.569 15 C 0.032 3.968 16 N -0.350 5.350 17 O -0.268 6.268 18 C 0.041 3.959 19 C 0.142 3.858 20 H 0.082 0.918 21 C -0.137 4.137 22 C 0.067 3.933 23 C -0.259 4.259 24 S 0.150 5.850 25 C 0.027 3.973 26 C -0.079 4.079 27 N -0.479 5.479 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.019 0.981 34 H -0.008 1.008 35 H 0.266 0.734 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.202 0.798 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 -6.859 26.198 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.146 3.854 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.287 3.713 14 O -0.448 6.448 15 C -0.098 4.098 16 N -0.119 5.119 17 O -0.273 6.273 18 C -0.057 4.057 19 C 0.031 3.969 20 H 0.099 0.901 21 C -0.195 4.195 22 C -0.065 4.065 23 C -0.398 4.398 24 S 0.405 5.595 25 C -0.251 4.251 26 C -0.139 4.139 27 N -0.194 5.194 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.037 0.963 34 H 0.010 0.990 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.219 0.781 45 H 0.110 0.890 46 H 0.123 0.877 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.895 -5.513 26.555 27.275 hybrid contribution -0.162 -0.325 -1.671 1.710 sum -3.057 -5.838 24.884 25.742 Atomic orbital electron populations 1.22155 0.94962 1.03449 1.01316 1.21751 0.95020 0.81453 1.04038 1.48249 1.64533 1.15121 1.05992 1.18615 0.95169 0.91274 0.80333 1.21713 0.97840 1.31766 1.06351 0.92820 1.25867 1.02370 0.94510 0.96507 1.70064 1.37801 1.34372 1.14803 0.85417 0.79047 0.78176 0.78172 1.18665 1.20775 1.19819 1.20960 0.77589 0.86793 0.85985 1.90534 1.46753 1.20020 1.87452 1.22461 1.03548 0.95745 0.88095 1.67223 1.38685 1.03372 1.02644 1.90430 1.28415 1.13904 1.94583 1.22797 0.98593 0.82633 1.01642 1.20646 1.00316 0.91258 0.84682 0.90050 1.21960 0.97369 0.95544 1.04619 1.20010 0.98425 0.93961 0.94143 1.26999 1.10875 1.06180 0.95791 1.83595 1.48267 1.14656 1.13016 1.27587 1.03214 1.02750 0.91561 1.20560 0.99201 0.89220 1.04890 1.66074 1.16210 1.05375 1.31742 0.92752 0.94521 0.88372 0.90758 0.88030 0.96312 0.99008 0.92512 0.83769 0.89193 0.91797 0.93917 0.90758 0.93182 0.88355 0.89783 0.78099 0.88962 0.87702 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 10.24 71.98 0.74 -3.38 16 2 C 0.10 3.05 5.93 86.38 0.51 3.57 16 3 N -0.61 -26.51 2.46 -826.13 -2.03 -28.54 16 4 C 0.27 14.94 5.16 85.63 0.44 15.38 16 5 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 13 C 0.50 21.93 7.58 87.66 0.66 22.60 16 14 O -0.57 -30.89 12.41 9.95 0.12 -30.76 16 15 C 0.03 0.99 4.13 85.56 0.35 1.34 16 16 N -0.35 -11.60 4.00 -499.46 -2.00 -13.60 16 17 O -0.27 -10.25 9.89 -37.17 -0.37 -10.62 16 18 C 0.04 1.58 10.75 113.37 1.22 2.80 16 19 C 0.14 3.38 2.69 44.17 0.12 3.50 16 20 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 21 C -0.14 -2.50 8.97 71.98 0.65 -1.86 16 22 C 0.07 1.65 5.27 41.52 0.22 1.87 16 23 C -0.26 -4.66 11.14 66.78 0.74 -3.91 16 24 S 0.15 2.41 23.18 -56.49 -1.31 1.10 16 25 C 0.03 0.58 7.39 88.52 0.65 1.24 16 26 C -0.08 -1.27 10.46 71.24 0.75 -0.52 16 27 N -0.48 -13.60 7.25 -179.39 -1.30 -14.90 16 28 H 0.05 1.35 7.22 -2.39 -0.02 1.33 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 33 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 34 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.15 3.47 5.09 -2.39 -0.01 3.45 16 37 H 0.09 2.36 7.19 -2.39 -0.02 2.35 16 38 H 0.06 2.38 5.63 -2.39 -0.01 2.36 16 39 H 0.04 2.02 5.18 -2.39 -0.01 2.01 16 40 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.24 6.20 -2.39 -0.01 1.23 16 44 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -83.48 391.85 4.16 -79.32 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.97 Total: 15.57 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 7.76 Total: 11.87 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -5.04 Total: -114.53 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.24 Total: -41.38 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.31 Total: 1.10 kcal Total: -83.48 4.16 -79.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931539314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.492 kcal (2) G-P(sol) polarization free energy of solvation -83.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds