Wall clock time and date at job start Wed Apr 1 2020 01:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.29110 * 126.01080 * 2 1 4 4 N 1.29021 * 110.26095 * 179.97438 * 3 2 1 5 5 C 1.32911 * 108.63517 * 359.97295 * 4 3 2 6 6 C 1.34400 * 126.00740 * 180.02562 * 2 1 3 7 7 C 1.50535 * 129.25268 * 0.23641 * 6 2 1 8 8 C 1.53437 * 108.32922 * 163.52097 * 7 6 2 9 9 H 1.08996 * 109.45584 * 289.69630 * 8 7 6 10 10 N 1.46502 * 109.46011 * 169.72675 * 8 7 6 11 11 C 1.34772 * 119.99851 * 154.99830 * 10 8 7 12 12 O 1.21586 * 120.00117 * 0.02562 * 11 10 8 13 13 N 1.34776 * 119.99944 * 180.02562 * 11 10 8 14 14 C 1.39954 * 119.99995 * 174.85456 * 13 11 10 15 15 C 1.39290 * 119.95183 * 145.76525 * 14 13 11 16 16 C 1.38483 * 120.43243 * 179.97438 * 15 14 13 17 17 C 1.37685 * 120.32137 * 359.97438 * 16 15 14 18 18 C 1.40743 * 119.88287 * 0.02562 * 17 16 15 19 19 C 1.41407 * 120.20839 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99945 * 205.17751 * 19 18 17 21 21 C 1.39930 * 120.00125 * 25.18523 * 19 18 17 22 22 N 1.30827 * 119.99871 * 16.77980 * 21 19 18 23 23 Si 1.86799 * 119.99814 * 196.78384 * 21 19 18 24 24 H 1.48492 * 109.47372 * 60.00040 * 23 21 19 25 25 H 1.48512 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47241 * 299.99478 * 23 21 19 27 27 C 1.38234 * 119.94431 * 325.48515 * 14 13 11 28 28 C 1.53110 * 109.54742 * 49.70446 * 8 7 6 29 29 C 1.50602 * 129.16430 * 180.38091 * 5 4 3 30 30 H 1.09001 * 109.46784 * 89.97855 * 1 2 3 31 31 H 1.08995 * 109.47650 * 209.97730 * 1 2 3 32 32 H 1.08995 * 109.47310 * 329.98385 * 1 2 3 33 33 H 1.09006 * 109.69310 * 283.22726 * 7 6 2 34 34 H 1.09003 * 109.69797 * 43.76795 * 7 6 2 35 35 H 0.97000 * 119.99854 * 335.00513 * 10 8 7 36 36 H 0.97003 * 120.00189 * 354.83992 * 13 11 10 37 37 H 1.08000 * 119.77912 * 0.02562 * 15 14 13 38 38 H 1.08001 * 119.84345 * 180.02562 * 16 15 14 39 39 H 1.07997 * 120.05542 * 180.02562 * 17 16 15 40 40 H 0.97001 * 119.99769 * 180.02562 * 22 21 19 41 41 H 1.07996 * 120.16141 * 359.97438 * 27 14 13 42 42 H 1.09003 * 109.45218 * 49.95005 * 28 8 7 43 43 H 1.09001 * 109.45448 * 169.88794 * 28 8 7 44 44 H 1.09001 * 109.68967 * 283.16221 * 29 5 4 45 45 H 1.09004 * 109.68932 * 43.73591 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6333 0.0015 6 6 2.2551 -1.0872 -0.0005 7 6 1.8721 -2.5430 -0.0059 8 6 3.1014 -3.3638 -0.4174 9 1 3.3147 -3.1941 -1.4727 10 7 2.8342 -4.7872 -0.1963 11 6 3.4998 -5.7166 -0.9102 12 8 4.3223 -5.3738 -1.7373 13 7 3.2536 -7.0260 -0.7072 14 6 3.8638 -7.9872 -1.5211 15 6 4.2295 -9.2203 -0.9865 16 6 4.8335 -10.1788 -1.7829 17 6 5.0787 -9.9231 -3.1134 18 6 4.7148 -8.6816 -3.6675 19 6 4.9629 -8.4118 -5.0332 20 1 5.0756 -7.3919 -5.3704 21 6 5.0624 -9.4661 -5.9479 22 7 4.6116 -10.6524 -5.6301 23 14 5.8389 -9.1796 -7.6225 24 1 7.2412 -8.7239 -7.4465 25 1 5.8242 -10.4460 -8.3981 26 1 5.0692 -8.1416 -8.3540 27 6 4.0975 -7.7134 -2.8557 28 6 4.3080 -2.9351 0.4220 29 6 4.7467 -1.5244 0.0102 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3633 0.8898 0.5141 33 1 1.5482 -2.8414 0.9912 34 1 1.0642 -2.7077 -0.7190 35 1 2.1781 -5.0607 0.4638 36 1 2.6536 -7.3023 0.0032 37 1 4.0400 -9.4306 0.0558 38 1 5.1127 -11.1319 -1.3586 39 1 5.5496 -10.6738 -3.7307 40 1 4.6809 -11.3833 -6.2640 41 1 3.8098 -6.7594 -3.2724 42 1 4.0347 -2.9354 1.4772 43 1 5.1295 -3.6330 0.2599 44 1 5.1879 -1.5537 -0.9861 45 1 5.4767 -1.1436 0.7246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931687153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:27 Heat of formation + Delta-G solvation = 89.502763 kcal Electronic energy + Delta-G solvation = -28563.746908 eV Core-core repulsion = 24583.008445 eV Total energy + Delta-G solvation = -3980.738462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.66291 -40.13493 -38.01405 -36.85554 -35.28563 -34.39336 -33.61852 -32.88742 -30.85883 -29.79239 -29.56651 -28.20282 -27.59304 -25.27283 -24.29324 -23.09961 -21.82401 -21.39664 -20.82743 -20.24936 -19.87985 -18.08238 -17.62214 -17.37755 -17.08828 -15.97466 -15.49482 -15.12618 -14.90041 -14.60098 -14.44898 -14.24310 -14.22086 -14.17575 -13.89155 -13.60733 -13.21691 -13.05994 -12.86219 -12.37850 -12.31299 -12.14063 -11.85623 -11.63499 -11.51083 -11.27088 -11.09690 -11.08493 -10.89139 -10.79959 -10.47028 -10.24323 -10.17843 -9.70806 -9.49221 -9.14894 -9.10697 -9.00291 -8.97034 -7.42010 -6.87748 -6.68254 -4.30910 1.26232 1.98674 2.31484 2.71422 2.84707 2.98946 3.10407 3.14503 3.25216 3.66956 3.89487 3.98562 4.11147 4.27902 4.40887 4.50169 4.54784 4.58882 4.68199 4.78497 4.79781 4.97447 5.12121 5.17494 5.34044 5.52251 5.62394 5.74639 5.81376 5.92020 5.98555 6.10242 6.24915 6.25686 6.41603 6.50385 6.76618 6.79809 7.06694 7.11413 7.26335 7.35524 7.70318 7.83693 8.01929 8.13372 8.25728 8.26678 8.42823 8.69005 8.91319 8.99510 9.04724 10.24256 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.002302 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.207850 B =12158.606189 C =13057.156098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.284 5.284 3 N -0.097 5.097 4 N -0.261 5.261 5 C -0.011 4.011 6 C -0.018 4.018 7 C -0.049 4.049 8 C 0.173 3.827 9 H 0.098 0.902 10 N -0.748 5.748 11 C 0.700 3.300 12 O -0.561 6.561 13 N -0.680 5.680 14 C 0.169 3.831 15 C -0.263 4.263 16 C -0.092 4.092 17 C -0.173 4.173 18 C 0.120 3.880 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.796 5.796 23 Si 0.908 3.092 24 H -0.263 1.263 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.209 4.209 28 C -0.130 4.130 29 C -0.032 4.032 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.392 0.608 36 H 0.394 0.606 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.280 0.720 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 13.093 13.079 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.075 5.075 4 N -0.126 5.126 5 C -0.151 4.151 6 C -0.152 4.152 7 C -0.089 4.089 8 C 0.067 3.933 9 H 0.116 0.884 10 N -0.404 5.404 11 C 0.400 3.600 12 O -0.436 6.436 13 N -0.327 5.327 14 C 0.076 3.924 15 C -0.285 4.285 16 C -0.111 4.111 17 C -0.193 4.193 18 C 0.117 3.883 19 C -0.488 4.488 20 H 0.096 0.904 21 C -0.141 4.141 22 N -0.422 5.422 23 Si 0.733 3.267 24 H -0.188 1.188 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.231 4.231 28 C -0.169 4.169 29 C -0.071 4.071 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.226 0.774 36 H 0.227 0.773 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.194 14.793 12.181 21.254 hybrid contribution -0.748 -1.278 -0.017 1.480 sum -9.942 13.515 12.164 20.724 Atomic orbital electron populations 1.22279 0.72770 1.05898 1.05218 1.46817 1.09139 1.04577 1.47117 1.78591 0.96201 1.11215 1.21483 1.74818 1.09453 1.12020 1.16281 1.21807 0.95133 0.91311 1.06852 1.21522 0.91268 0.91761 1.10683 1.20336 0.99114 0.86219 1.03242 1.20636 0.92525 0.78515 1.01664 0.88389 1.45096 1.45881 1.05059 1.44351 1.15926 0.81587 0.80871 0.81620 1.90996 1.35961 1.80004 1.36652 1.42580 1.49602 1.03907 1.36583 1.17207 0.97940 0.87750 0.89453 1.19998 1.14808 0.95660 0.98034 1.20444 0.99382 0.96775 0.94512 1.21339 1.05201 0.99348 0.93417 1.17485 0.87429 0.90645 0.92723 1.19546 1.42933 0.94092 0.92208 0.90426 1.25892 0.92964 0.94532 1.00746 1.69820 1.33653 1.02048 1.36657 0.86374 0.80825 0.78462 0.81089 1.18796 1.20413 1.19045 1.20982 1.08944 1.01487 0.91671 1.22064 0.99090 0.95996 0.99784 1.19933 0.92339 0.91153 1.03699 0.88868 0.88314 0.87908 0.89195 0.89330 0.77432 0.77307 0.89411 0.89100 0.86371 0.90937 0.87565 0.91459 0.89436 0.89219 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.27 59.84 0.67 0.99 16 2 N -0.28 -2.65 3.73 -64.01 -0.24 -2.89 16 3 N -0.10 -1.24 13.19 60.35 0.80 -0.44 16 4 N -0.26 -3.67 12.40 33.17 0.41 -3.26 16 5 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 6 C -0.02 -0.17 6.76 -82.50 -0.56 -0.73 16 7 C -0.05 -0.34 5.42 -27.74 -0.15 -0.50 16 8 C 0.17 1.75 2.43 -67.65 -0.16 1.58 16 9 H 0.10 1.27 7.55 -51.93 -0.39 0.88 16 10 N -0.75 -8.01 5.08 -58.40 -0.30 -8.31 16 11 C 0.70 11.62 8.24 -86.92 -0.72 10.90 16 12 O -0.56 -12.10 13.76 5.29 0.07 -12.03 16 13 N -0.68 -11.41 5.34 -14.27 -0.08 -11.49 16 14 C 0.17 3.73 6.25 -83.76 -0.52 3.20 16 15 C -0.26 -5.68 9.97 -39.10 -0.39 -6.07 16 16 C -0.09 -2.13 10.02 -39.69 -0.40 -2.53 16 17 C -0.17 -4.53 8.69 -38.84 -0.34 -4.87 16 18 C 0.12 3.29 5.57 -106.85 -0.59 2.70 16 19 C -0.46 -12.56 9.05 -37.74 -0.34 -12.90 16 20 H 0.08 2.10 7.90 -52.49 -0.41 1.69 16 21 C 0.08 1.94 5.16 -17.35 -0.09 1.85 16 22 N -0.80 -20.69 10.94 55.55 0.61 -20.08 16 23 Si 0.91 19.14 29.59 -169.99 -5.03 14.11 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 C -0.21 -5.36 8.39 -38.69 -0.32 -5.68 16 28 C -0.13 -1.29 5.47 -26.49 -0.14 -1.44 16 29 C -0.03 -0.33 6.30 -27.74 -0.17 -0.50 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.15 7.96 -51.93 -0.41 -0.26 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.43 8.13 -51.93 -0.42 0.00 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.39 2.77 8.62 -40.82 -0.35 2.42 16 36 H 0.39 4.92 8.84 -40.82 -0.36 4.56 16 37 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.12 3.17 6.17 -52.49 -0.32 2.85 16 40 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 41 H 0.11 2.82 6.48 -52.49 -0.34 2.48 16 42 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 43 H 0.09 1.05 8.13 -51.93 -0.42 0.63 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -35.05 374.46 -8.89 -43.94 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.96 Total: 9.51 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -4.82 Total: -14.71 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 1.20 Total: -46.47 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.05 -8.89 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.447 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds