Wall clock time and date at job start Wed Apr 1 2020 01:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.29110 * 126.01080 * 2 1 4 4 N 1.29021 * 110.26095 * 179.97438 * 3 2 1 5 5 C 1.32911 * 108.63517 * 359.97295 * 4 3 2 6 6 C 1.34400 * 126.00740 * 180.02562 * 2 1 3 7 7 C 1.50535 * 129.25268 * 0.23641 * 6 2 1 8 8 C 1.53437 * 108.32922 * 163.52097 * 7 6 2 9 9 H 1.08996 * 109.45584 * 289.69630 * 8 7 6 10 10 N 1.46502 * 109.46011 * 169.72675 * 8 7 6 11 11 C 1.34772 * 119.99851 * 154.99830 * 10 8 7 12 12 O 1.21586 * 120.00117 * 0.02562 * 11 10 8 13 13 N 1.34776 * 119.99944 * 180.02562 * 11 10 8 14 14 C 1.39954 * 119.99995 * 174.85456 * 13 11 10 15 15 C 1.39290 * 119.95183 * 145.76525 * 14 13 11 16 16 C 1.38483 * 120.43243 * 179.97438 * 15 14 13 17 17 C 1.37685 * 120.32137 * 359.97438 * 16 15 14 18 18 C 1.40743 * 119.88287 * 0.02562 * 17 16 15 19 19 C 1.41407 * 120.20839 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99945 * 205.17751 * 19 18 17 21 21 C 1.39930 * 120.00125 * 25.18523 * 19 18 17 22 22 N 1.30827 * 119.99871 * 16.77980 * 21 19 18 23 23 Si 1.86799 * 119.99814 * 196.78384 * 21 19 18 24 24 H 1.48492 * 109.47372 * 60.00040 * 23 21 19 25 25 H 1.48512 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47241 * 299.99478 * 23 21 19 27 27 C 1.38234 * 119.94431 * 325.48515 * 14 13 11 28 28 C 1.53110 * 109.54742 * 49.70446 * 8 7 6 29 29 C 1.50602 * 129.16430 * 180.38091 * 5 4 3 30 30 H 1.09001 * 109.46784 * 89.97855 * 1 2 3 31 31 H 1.08995 * 109.47650 * 209.97730 * 1 2 3 32 32 H 1.08995 * 109.47310 * 329.98385 * 1 2 3 33 33 H 1.09006 * 109.69310 * 283.22726 * 7 6 2 34 34 H 1.09003 * 109.69797 * 43.76795 * 7 6 2 35 35 H 0.97000 * 119.99854 * 335.00513 * 10 8 7 36 36 H 0.97003 * 120.00189 * 354.83992 * 13 11 10 37 37 H 1.08000 * 119.77912 * 0.02562 * 15 14 13 38 38 H 1.08001 * 119.84345 * 180.02562 * 16 15 14 39 39 H 1.07997 * 120.05542 * 180.02562 * 17 16 15 40 40 H 0.97001 * 119.99769 * 180.02562 * 22 21 19 41 41 H 1.07996 * 120.16141 * 359.97438 * 27 14 13 42 42 H 1.09003 * 109.45218 * 49.95005 * 28 8 7 43 43 H 1.09001 * 109.45448 * 169.88794 * 28 8 7 44 44 H 1.09001 * 109.68967 * 283.16221 * 29 5 4 45 45 H 1.09004 * 109.68932 * 43.73591 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6333 0.0015 6 6 2.2551 -1.0872 -0.0005 7 6 1.8721 -2.5430 -0.0059 8 6 3.1014 -3.3638 -0.4174 9 1 3.3147 -3.1941 -1.4727 10 7 2.8342 -4.7872 -0.1963 11 6 3.4998 -5.7166 -0.9102 12 8 4.3223 -5.3738 -1.7373 13 7 3.2536 -7.0260 -0.7072 14 6 3.8638 -7.9872 -1.5211 15 6 4.2295 -9.2203 -0.9865 16 6 4.8335 -10.1788 -1.7829 17 6 5.0787 -9.9231 -3.1134 18 6 4.7148 -8.6816 -3.6675 19 6 4.9629 -8.4118 -5.0332 20 1 5.0756 -7.3919 -5.3704 21 6 5.0624 -9.4661 -5.9479 22 7 4.6116 -10.6524 -5.6301 23 14 5.8389 -9.1796 -7.6225 24 1 7.2412 -8.7239 -7.4465 25 1 5.8242 -10.4460 -8.3981 26 1 5.0692 -8.1416 -8.3540 27 6 4.0975 -7.7134 -2.8557 28 6 4.3080 -2.9351 0.4220 29 6 4.7467 -1.5244 0.0102 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3633 0.8898 0.5141 33 1 1.5482 -2.8414 0.9912 34 1 1.0642 -2.7077 -0.7190 35 1 2.1781 -5.0607 0.4638 36 1 2.6536 -7.3023 0.0032 37 1 4.0400 -9.4306 0.0558 38 1 5.1127 -11.1319 -1.3586 39 1 5.5496 -10.6738 -3.7307 40 1 4.6809 -11.3833 -6.2640 41 1 3.8098 -6.7594 -3.2724 42 1 4.0347 -2.9354 1.4772 43 1 5.1295 -3.6330 0.2599 44 1 5.1879 -1.5537 -0.9861 45 1 5.4767 -1.1436 0.7246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931687153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:26 Heat of formation + Delta-G solvation = 64.636316 kcal Electronic energy + Delta-G solvation = -28564.825198 eV Core-core repulsion = 24583.008445 eV Total energy + Delta-G solvation = -3981.816752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.45572 -41.47283 -39.41076 -38.19846 -36.11939 -35.98542 -34.95794 -34.37499 -31.70145 -31.57829 -30.66466 -29.28633 -28.57297 -27.20597 -25.14229 -24.16487 -23.01610 -22.66413 -22.33878 -21.56357 -20.88927 -19.57254 -19.17420 -18.09668 -17.87326 -17.42935 -17.07304 -16.47440 -16.23820 -16.20961 -15.62416 -15.35545 -15.18592 -14.91775 -14.79445 -14.65344 -14.60788 -14.10249 -13.95114 -13.67002 -13.49498 -13.21032 -13.03430 -12.97520 -12.89371 -12.74754 -12.69865 -12.33487 -12.16385 -12.02078 -11.92664 -11.60822 -11.51704 -11.19040 -10.96855 -10.94559 -10.73161 -10.10170 -9.90850 -9.34362 -8.68456 -8.54140 -6.33124 0.51267 0.97489 1.07869 1.37024 1.37702 1.42878 1.47922 1.53187 1.74780 2.22132 2.25654 2.78269 3.10552 3.31862 3.50928 3.71226 3.76530 3.79749 3.87547 4.07759 4.23353 4.29872 4.40735 4.44686 4.52301 4.59376 4.65326 4.69607 4.78167 4.88161 4.98007 5.07049 5.09775 5.12919 5.17269 5.17325 5.26088 5.27832 5.37427 5.51279 5.61934 5.78480 5.88284 6.10998 6.16488 6.25781 6.41505 6.73579 6.98520 7.05810 7.19416 7.42194 7.68382 8.35948 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.002302 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.207850 B =12158.606189 C =13057.156098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.273 5.273 3 N -0.127 5.127 4 N -0.302 5.302 5 C -0.035 4.035 6 C -0.008 4.008 7 C -0.036 4.036 8 C 0.172 3.828 9 H 0.063 0.937 10 N -0.716 5.716 11 C 0.697 3.303 12 O -0.616 6.616 13 N -0.668 5.668 14 C 0.179 3.821 15 C -0.250 4.250 16 C -0.092 4.092 17 C -0.201 4.201 18 C 0.088 3.912 19 C -0.503 4.503 20 H 0.061 0.939 21 C 0.039 3.961 22 N -0.822 5.822 23 Si 0.978 3.022 24 H -0.264 1.264 25 H -0.260 1.260 26 H -0.263 1.263 27 C -0.235 4.235 28 C -0.121 4.121 29 C -0.029 4.029 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.418 0.582 36 H 0.419 0.581 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.289 0.711 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.198 12.377 15.480 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.066 5.066 3 N -0.105 5.105 4 N -0.166 5.166 5 C -0.176 4.176 6 C -0.144 4.144 7 C -0.075 4.075 8 C 0.066 3.934 9 H 0.082 0.918 10 N -0.373 5.373 11 C 0.397 3.603 12 O -0.494 6.494 13 N -0.317 5.317 14 C 0.085 3.915 15 C -0.271 4.271 16 C -0.110 4.110 17 C -0.221 4.221 18 C 0.086 3.914 19 C -0.533 4.533 20 H 0.079 0.921 21 C -0.176 4.176 22 N -0.448 5.448 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.184 1.184 26 H -0.188 1.188 27 C -0.257 4.257 28 C -0.160 4.160 29 C -0.068 4.068 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.256 0.744 36 H 0.257 0.743 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.587 14.112 14.667 23.421 hybrid contribution -0.135 -1.003 -0.597 1.175 sum -11.722 13.109 14.071 22.522 Atomic orbital electron populations 1.22818 0.69644 1.08202 1.06804 1.47222 1.10776 1.03599 1.45022 1.78493 0.96249 1.12597 1.23114 1.74746 1.10590 1.13415 1.17822 1.22053 0.96537 0.90987 1.08032 1.21814 0.90552 0.92950 1.09038 1.20356 0.97609 0.83513 1.06065 1.20638 0.94503 0.78288 1.00006 0.91847 1.44721 1.44883 1.04278 1.43433 1.16135 0.81393 0.81302 0.81434 1.90985 1.38500 1.80793 1.39128 1.42295 1.49669 1.03274 1.36472 1.17226 0.96562 0.88970 0.88715 1.20445 1.12378 0.94472 0.99840 1.20825 0.98363 0.98447 0.93401 1.21294 1.07023 0.98816 0.94960 1.17824 0.88408 0.91892 0.93322 1.19693 1.46077 0.94076 0.93453 0.92082 1.26646 0.92786 0.93937 1.04239 1.69851 1.34006 1.02736 1.38213 0.85329 0.79450 0.78986 0.76366 1.18862 1.18432 1.18786 1.20936 1.10594 1.00480 0.93647 1.21956 0.98179 0.94782 1.01096 1.19874 0.92435 0.91534 1.02984 0.87567 0.84924 0.86864 0.85127 0.87164 0.74449 0.74289 0.84896 0.86006 0.87999 0.90077 0.89800 0.88914 0.91886 0.90932 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 11.27 127.77 1.44 1.73 16 2 N -0.27 -4.54 3.73 -356.43 -1.33 -5.87 16 3 N -0.13 -3.19 13.19 37.02 0.49 -2.70 16 4 N -0.30 -8.66 12.40 -48.98 -0.61 -9.27 16 5 C -0.03 -0.82 7.11 41.75 0.30 -0.52 16 6 C -0.01 -0.13 6.76 41.50 0.28 0.15 16 7 C -0.04 -0.36 5.42 29.94 0.16 -0.20 16 8 C 0.17 3.17 2.43 45.17 0.11 3.28 16 9 H 0.06 1.67 7.55 -2.39 -0.02 1.65 16 10 N -0.72 -13.30 5.08 -456.94 -2.32 -15.62 16 11 C 0.70 22.34 8.24 179.06 1.48 23.81 16 12 O -0.62 -27.33 13.76 -3.99 -0.05 -27.39 16 13 N -0.67 -20.84 5.34 -317.33 -1.70 -22.53 16 14 C 0.18 7.74 6.25 38.10 0.24 7.98 16 15 C -0.25 -10.08 9.97 22.58 0.23 -9.86 16 16 C -0.09 -4.11 10.02 22.20 0.22 -3.88 16 17 C -0.20 -10.77 8.69 22.75 0.20 -10.57 16 18 C 0.09 5.07 5.57 -21.31 -0.12 4.95 16 19 C -0.50 -29.30 9.05 23.46 0.21 -29.09 16 20 H 0.06 3.58 7.90 -2.91 -0.02 3.56 16 21 C 0.04 2.05 5.16 85.25 0.44 2.49 16 22 N -0.82 -43.94 10.94 21.82 0.24 -43.70 16 23 Si 0.98 40.38 29.59 68.60 2.03 42.41 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 27 C -0.23 -12.46 8.39 22.85 0.19 -12.27 16 28 C -0.12 -2.28 5.47 30.75 0.17 -2.11 16 29 C -0.03 -0.61 6.30 29.94 0.19 -0.42 16 30 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.13 -0.29 7.96 -2.39 -0.02 -0.30 16 32 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.13 0.38 8.13 -2.38 -0.02 0.36 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.42 3.82 8.62 -92.71 -0.80 3.02 16 36 H 0.42 8.67 8.84 -92.71 -0.82 7.86 16 37 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.10 5.69 6.17 -2.91 -0.02 5.67 16 40 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 41 H 0.08 4.74 6.48 -2.91 -0.02 4.72 16 42 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 43 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 44 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -84.40 374.46 1.91 -82.49 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: -0.57 Total: 26.71 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 5.73 Total: -24.53 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -5.23 Total: -99.69 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -84.40 1.91 -82.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.126 kcal (2) G-P(sol) polarization free energy of solvation -84.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds