Wall clock time and date at job start Wed Apr 1 2020 01:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29101 * 126.00678 * 2 1 4 4 N 1.29026 * 110.25798 * 180.02562 * 3 2 1 5 5 C 1.32906 * 108.63643 * 0.02562 * 4 3 2 6 6 C 1.34394 * 126.00563 * 179.97438 * 2 1 3 7 7 C 1.50538 * 129.25958 * 359.88009 * 6 2 1 8 8 C 1.53434 * 108.33135 * 196.43113 * 7 6 2 9 9 H 1.08996 * 109.45416 * 70.29998 * 8 7 6 10 10 N 1.46488 * 109.45936 * 190.27510 * 8 7 6 11 11 C 1.34786 * 119.99902 * 205.03039 * 10 8 7 12 12 O 1.21582 * 119.99996 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00102 * 179.97438 * 11 10 8 14 14 C 1.39954 * 120.00357 * 174.96759 * 13 11 10 15 15 C 1.39287 * 119.95042 * 146.73697 * 14 13 11 16 16 C 1.38485 * 120.42905 * 179.97438 * 15 14 13 17 17 C 1.37680 * 120.32084 * 0.03028 * 16 15 14 18 18 C 1.40741 * 119.88653 * 359.97438 * 17 16 15 19 19 C 1.41408 * 120.21124 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99790 * 151.44773 * 19 18 17 21 21 C 1.39934 * 120.00033 * 331.43742 * 19 18 17 22 22 N 1.30830 * 119.99998 * 166.25980 * 21 19 18 23 23 Si 1.86804 * 119.99740 * 346.26459 * 21 19 18 24 24 H 1.48501 * 109.47102 * 95.31408 * 23 21 19 25 25 H 1.48508 * 109.46867 * 215.30772 * 23 21 19 26 26 H 1.48495 * 109.47314 * 335.30720 * 23 21 19 27 27 C 1.38234 * 119.94239 * 326.47754 * 14 13 11 28 28 C 1.53111 * 109.54844 * 310.28323 * 8 7 6 29 29 C 1.50601 * 129.16325 * 179.77617 * 5 4 3 30 30 H 1.08997 * 109.47116 * 270.04431 * 1 2 3 31 31 H 1.09002 * 109.47269 * 30.04492 * 1 2 3 32 32 H 1.09003 * 109.46885 * 150.03943 * 1 2 3 33 33 H 1.09003 * 109.68949 * 76.71613 * 7 6 2 34 34 H 1.08999 * 109.69317 * 316.14221 * 7 6 2 35 35 H 0.97005 * 120.00776 * 25.03110 * 10 8 7 36 36 H 0.97010 * 120.00164 * 354.96301 * 13 11 10 37 37 H 1.07998 * 119.78141 * 0.02562 * 15 14 13 38 38 H 1.08005 * 119.83661 * 180.02562 * 16 15 14 39 39 H 1.08004 * 120.05732 * 180.02562 * 17 16 15 40 40 H 0.96997 * 119.99535 * 180.02562 * 22 21 19 41 41 H 1.08001 * 120.16160 * 359.97438 * 27 14 13 42 42 H 1.09001 * 109.45471 * 190.09609 * 28 8 7 43 43 H 1.09000 * 109.45366 * 310.03063 * 28 8 7 44 44 H 1.08999 * 109.68695 * 316.32147 * 29 5 4 45 45 H 1.08999 * 109.69080 * 76.90035 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0005 5 6 3.5327 -0.6332 -0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5431 0.0036 8 6 3.1012 -3.3644 0.4149 9 1 3.3136 -3.1960 1.4706 10 7 2.8343 -4.7873 0.1915 11 6 3.4989 -5.7178 0.9051 12 8 4.3197 -5.3761 1.7344 13 7 3.2530 -7.0269 0.7000 14 6 4.0160 -7.9947 1.3633 15 6 3.4325 -9.2018 1.7407 16 6 4.1783 -10.1665 2.3970 17 6 5.5060 -9.9422 2.6845 18 6 6.1092 -8.7272 2.3094 19 6 7.4721 -8.4894 2.6017 20 1 8.0544 -7.8370 1.9679 21 6 8.0663 -9.0992 3.7122 22 7 9.3686 -9.1041 3.8370 23 14 6.9999 -9.9064 5.0164 24 1 6.8859 -11.3596 4.7327 25 1 7.6179 -9.7099 6.3523 26 1 5.6484 -9.2915 5.0009 27 6 5.3490 -7.7531 1.6382 28 6 4.3084 -2.9346 -0.4231 29 6 4.7468 -1.5243 -0.0069 30 1 -0.3633 0.0008 1.0276 31 1 -0.3634 0.8896 -0.5145 32 1 -0.3633 -0.8904 -0.5132 33 1 1.5490 -2.8399 -0.9942 34 1 1.0643 -2.7089 0.7163 35 1 2.1792 -5.0601 -0.4699 36 1 2.5470 -7.2985 0.0926 37 1 2.3918 -9.3869 1.5192 38 1 3.7162 -11.0993 2.6848 39 1 6.0838 -10.6977 3.1961 40 1 9.7804 -9.5271 4.6066 41 1 5.8036 -6.8192 1.3420 42 1 5.1298 -3.6325 -0.2610 43 1 4.0360 -2.9339 -1.4785 44 1 5.4791 -1.1428 -0.7186 45 1 5.1847 -1.5546 0.9908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931687154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:30 Heat of formation + Delta-G solvation = 93.168197 kcal Electronic energy + Delta-G solvation = -28713.679962 eV Core-core repulsion = 24733.100445 eV Total energy + Delta-G solvation = -3980.579517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.67689 -40.24843 -38.17234 -37.03471 -35.30515 -34.44815 -33.66381 -33.07280 -30.86580 -30.30241 -29.68142 -28.35183 -27.90531 -25.19479 -24.31953 -23.19741 -21.93101 -21.54090 -20.84416 -20.40352 -20.00575 -18.14345 -17.77232 -17.40937 -17.11009 -16.11989 -15.83925 -15.23449 -15.08638 -14.57600 -14.50907 -14.31922 -14.26006 -14.23561 -13.93287 -13.64979 -13.40473 -13.22795 -12.73169 -12.64243 -12.33662 -12.25407 -12.06495 -11.85113 -11.62373 -11.50140 -11.18096 -11.05476 -10.80761 -10.69413 -10.66803 -10.24843 -9.99209 -9.88869 -9.59193 -9.20840 -9.14553 -9.09530 -9.01575 -7.64031 -7.08236 -6.87685 -4.43715 1.24605 1.96625 2.30812 2.49938 2.65964 2.78656 3.14995 3.28620 3.38727 3.52420 3.86144 4.04938 4.07548 4.25274 4.36225 4.47136 4.49151 4.54322 4.57397 4.75663 4.77316 4.95018 5.11402 5.16184 5.33198 5.48803 5.50386 5.61009 5.81466 5.92626 5.97031 6.00247 6.10495 6.20370 6.23237 6.39796 6.45396 6.57351 6.68911 6.85089 7.02609 7.25285 7.48957 7.59860 7.66555 7.93514 8.09817 8.24739 8.27422 8.41909 8.70101 8.82982 8.90100 10.14794 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.002382 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.225645 B =11754.190029 C =12659.449941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.284 5.284 3 N -0.097 5.097 4 N -0.261 5.261 5 C -0.009 4.009 6 C -0.020 4.020 7 C -0.048 4.048 8 C 0.173 3.827 9 H 0.098 0.902 10 N -0.746 5.746 11 C 0.699 3.301 12 O -0.557 6.557 13 N -0.682 5.682 14 C 0.181 3.819 15 C -0.268 4.268 16 C -0.063 4.063 17 C -0.251 4.251 18 C 0.102 3.898 19 C -0.436 4.436 20 H 0.090 0.910 21 C 0.081 3.919 22 N -0.812 5.812 23 Si 0.916 3.084 24 H -0.273 1.273 25 H -0.295 1.295 26 H -0.240 1.240 27 C -0.197 4.197 28 C -0.131 4.131 29 C -0.032 4.032 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.393 0.607 36 H 0.396 0.604 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.285 0.715 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.389 11.359 -9.576 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.077 5.077 3 N -0.075 5.075 4 N -0.125 5.125 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.088 4.088 8 C 0.066 3.934 9 H 0.116 0.884 10 N -0.403 5.403 11 C 0.399 3.601 12 O -0.431 6.431 13 N -0.328 5.328 14 C 0.088 3.912 15 C -0.289 4.289 16 C -0.082 4.082 17 C -0.270 4.270 18 C 0.099 3.901 19 C -0.465 4.465 20 H 0.108 0.892 21 C -0.137 4.137 22 N -0.436 5.436 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.223 1.223 26 H -0.163 1.163 27 C -0.218 4.218 28 C -0.170 4.170 29 C -0.072 4.072 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.226 0.774 36 H 0.229 0.771 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.349 13.283 -8.698 24.264 hybrid contribution -1.360 -1.708 -0.017 2.183 sum -19.708 11.575 -8.714 24.461 Atomic orbital electron populations 1.22273 0.72816 1.05894 1.05154 1.46813 1.09114 1.04586 1.47170 1.78596 0.96221 1.11200 1.21452 1.74828 1.09406 1.12039 1.16240 1.21832 0.95151 0.91310 1.06666 1.21507 0.91282 0.91729 1.10880 1.20328 0.99026 0.86284 1.03202 1.20655 0.92635 0.78369 1.01707 0.88378 1.45089 1.46218 1.05124 1.43830 1.15938 0.81803 0.80811 0.81551 1.91024 1.36104 1.79952 1.36054 1.42589 1.38404 1.03777 1.48058 1.17261 0.90182 0.87634 0.96096 1.19989 0.98527 0.96384 1.14034 1.20322 0.93933 0.96890 0.97088 1.20952 0.95790 0.98465 1.11815 1.17615 0.92918 0.89764 0.89843 1.19499 0.93310 1.24088 1.09607 0.89175 1.26177 0.95146 0.93066 0.99302 1.69666 1.10947 1.34516 1.28500 0.86263 0.82024 0.79422 0.77934 1.19924 1.22275 1.16342 1.20960 0.91270 0.99966 1.09637 1.22080 0.99047 0.96091 0.99772 1.19957 0.92326 0.91112 1.03793 0.88919 0.87903 0.88349 0.89183 0.89436 0.77384 0.77061 0.88789 0.88547 0.88443 0.90497 0.86623 0.89267 0.91390 0.89299 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.27 59.85 0.67 0.96 16 2 N -0.28 -2.58 3.73 -64.00 -0.24 -2.82 16 3 N -0.10 -1.22 13.19 60.35 0.80 -0.43 16 4 N -0.26 -3.66 12.40 33.17 0.41 -3.25 16 5 C -0.01 -0.11 7.11 -83.12 -0.59 -0.70 16 6 C -0.02 -0.19 6.76 -82.49 -0.56 -0.74 16 7 C -0.05 -0.32 5.42 -27.74 -0.15 -0.47 16 8 C 0.17 1.68 2.43 -67.65 -0.16 1.51 16 9 H 0.10 1.22 7.55 -51.93 -0.39 0.83 16 10 N -0.75 -7.50 5.08 -58.41 -0.30 -7.79 16 11 C 0.70 11.03 8.25 -86.91 -0.72 10.31 16 12 O -0.56 -11.68 13.69 5.29 0.07 -11.61 16 13 N -0.68 -10.60 5.35 -14.27 -0.08 -10.67 16 14 C 0.18 3.74 6.27 -83.76 -0.53 3.21 16 15 C -0.27 -5.31 9.97 -39.10 -0.39 -5.70 16 16 C -0.06 -1.35 10.02 -39.69 -0.40 -1.75 16 17 C -0.25 -6.08 6.93 -38.84 -0.27 -6.35 16 18 C 0.10 2.67 5.18 -106.85 -0.55 2.12 16 19 C -0.44 -12.22 9.61 -37.74 -0.36 -12.58 16 20 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 21 C 0.08 2.20 5.46 -17.34 -0.09 2.11 16 22 N -0.81 -22.23 13.93 55.55 0.77 -21.45 16 23 Si 0.92 21.53 24.37 -169.99 -4.14 17.39 16 24 H -0.27 -6.13 6.76 56.52 0.38 -5.74 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.24 -5.83 6.51 56.52 0.37 -5.46 16 27 C -0.20 -4.79 8.39 -38.69 -0.32 -5.11 16 28 C -0.13 -1.31 5.47 -26.45 -0.14 -1.46 16 29 C -0.03 -0.34 6.30 -27.70 -0.17 -0.51 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.11 7.96 -51.93 -0.41 -0.30 16 33 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.39 2.48 8.62 -40.82 -0.35 2.13 16 36 H 0.40 4.40 8.83 -40.82 -0.36 4.04 16 37 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 39 H 0.10 2.36 4.23 -52.48 -0.22 2.13 16 40 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 41 H 0.12 2.94 6.41 -52.49 -0.34 2.60 16 42 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 43 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -35.60 368.12 -7.81 -43.40 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.91 Total: 6.84 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -4.74 Total: -15.16 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 1.37 Total: -46.41 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.60 -7.81 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.572 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds