Wall clock time and date at job start Wed Apr 1 2020 01:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29101 * 126.00678 * 2 1 4 4 N 1.29026 * 110.25798 * 180.02562 * 3 2 1 5 5 C 1.32906 * 108.63643 * 0.02562 * 4 3 2 6 6 C 1.34394 * 126.00563 * 179.97438 * 2 1 3 7 7 C 1.50538 * 129.25958 * 359.88009 * 6 2 1 8 8 C 1.53434 * 108.33135 * 196.43113 * 7 6 2 9 9 H 1.08996 * 109.45416 * 70.29998 * 8 7 6 10 10 N 1.46488 * 109.45936 * 190.27510 * 8 7 6 11 11 C 1.34786 * 119.99902 * 205.03039 * 10 8 7 12 12 O 1.21582 * 119.99996 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00102 * 179.97438 * 11 10 8 14 14 C 1.39954 * 120.00357 * 174.96759 * 13 11 10 15 15 C 1.39287 * 119.95042 * 146.73697 * 14 13 11 16 16 C 1.38485 * 120.42905 * 179.97438 * 15 14 13 17 17 C 1.37680 * 120.32084 * 0.03028 * 16 15 14 18 18 C 1.40741 * 119.88653 * 359.97438 * 17 16 15 19 19 C 1.41408 * 120.21124 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99790 * 151.44773 * 19 18 17 21 21 C 1.39934 * 120.00033 * 331.43742 * 19 18 17 22 22 N 1.30830 * 119.99998 * 166.25980 * 21 19 18 23 23 Si 1.86804 * 119.99740 * 346.26459 * 21 19 18 24 24 H 1.48501 * 109.47102 * 95.31408 * 23 21 19 25 25 H 1.48508 * 109.46867 * 215.30772 * 23 21 19 26 26 H 1.48495 * 109.47314 * 335.30720 * 23 21 19 27 27 C 1.38234 * 119.94239 * 326.47754 * 14 13 11 28 28 C 1.53111 * 109.54844 * 310.28323 * 8 7 6 29 29 C 1.50601 * 129.16325 * 179.77617 * 5 4 3 30 30 H 1.08997 * 109.47116 * 270.04431 * 1 2 3 31 31 H 1.09002 * 109.47269 * 30.04492 * 1 2 3 32 32 H 1.09003 * 109.46885 * 150.03943 * 1 2 3 33 33 H 1.09003 * 109.68949 * 76.71613 * 7 6 2 34 34 H 1.08999 * 109.69317 * 316.14221 * 7 6 2 35 35 H 0.97005 * 120.00776 * 25.03110 * 10 8 7 36 36 H 0.97010 * 120.00164 * 354.96301 * 13 11 10 37 37 H 1.07998 * 119.78141 * 0.02562 * 15 14 13 38 38 H 1.08005 * 119.83661 * 180.02562 * 16 15 14 39 39 H 1.08004 * 120.05732 * 180.02562 * 17 16 15 40 40 H 0.96997 * 119.99535 * 180.02562 * 22 21 19 41 41 H 1.08001 * 120.16160 * 359.97438 * 27 14 13 42 42 H 1.09001 * 109.45471 * 190.09609 * 28 8 7 43 43 H 1.09000 * 109.45366 * 310.03063 * 28 8 7 44 44 H 1.08999 * 109.68695 * 316.32147 * 29 5 4 45 45 H 1.08999 * 109.69080 * 76.90035 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0005 5 6 3.5327 -0.6332 -0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5431 0.0036 8 6 3.1012 -3.3644 0.4149 9 1 3.3136 -3.1960 1.4706 10 7 2.8343 -4.7873 0.1915 11 6 3.4989 -5.7178 0.9051 12 8 4.3197 -5.3761 1.7344 13 7 3.2530 -7.0269 0.7000 14 6 4.0160 -7.9947 1.3633 15 6 3.4325 -9.2018 1.7407 16 6 4.1783 -10.1665 2.3970 17 6 5.5060 -9.9422 2.6845 18 6 6.1092 -8.7272 2.3094 19 6 7.4721 -8.4894 2.6017 20 1 8.0544 -7.8370 1.9679 21 6 8.0663 -9.0992 3.7122 22 7 9.3686 -9.1041 3.8370 23 14 6.9999 -9.9064 5.0164 24 1 6.8859 -11.3596 4.7327 25 1 7.6179 -9.7099 6.3523 26 1 5.6484 -9.2915 5.0009 27 6 5.3490 -7.7531 1.6382 28 6 4.3084 -2.9346 -0.4231 29 6 4.7468 -1.5243 -0.0069 30 1 -0.3633 0.0008 1.0276 31 1 -0.3634 0.8896 -0.5145 32 1 -0.3633 -0.8904 -0.5132 33 1 1.5490 -2.8399 -0.9942 34 1 1.0643 -2.7089 0.7163 35 1 2.1792 -5.0601 -0.4699 36 1 2.5470 -7.2985 0.0926 37 1 2.3918 -9.3869 1.5192 38 1 3.7162 -11.0993 2.6848 39 1 6.0838 -10.6977 3.1961 40 1 9.7804 -9.5271 4.6066 41 1 5.8036 -6.8192 1.3420 42 1 5.1298 -3.6325 -0.2610 43 1 4.0360 -2.9339 -1.4785 44 1 5.4791 -1.1428 -0.7186 45 1 5.1847 -1.5546 0.9908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931687154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:29 Heat of formation + Delta-G solvation = 65.826354 kcal Electronic energy + Delta-G solvation = -28714.865593 eV Core-core repulsion = 24733.100445 eV Total energy + Delta-G solvation = -3981.765148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.45970 -41.54325 -39.58411 -38.27205 -36.11093 -35.99095 -35.06403 -34.51703 -32.13579 -31.58373 -30.85353 -29.54000 -28.59529 -27.09831 -25.17532 -24.29560 -23.12010 -22.64626 -22.40659 -21.67798 -20.91601 -19.59973 -19.30714 -18.10514 -17.89362 -17.78419 -17.21155 -16.51411 -16.40179 -16.23020 -15.60911 -15.48566 -15.22676 -15.02454 -14.89924 -14.67280 -14.57266 -14.27648 -14.09753 -13.87120 -13.66994 -13.36921 -13.15716 -13.04150 -12.86834 -12.73140 -12.60965 -12.45801 -12.32979 -12.02361 -11.74329 -11.63827 -11.59248 -11.38844 -10.97579 -10.90722 -10.77528 -10.13461 -9.91422 -9.49095 -8.86440 -8.73090 -6.49921 0.51377 0.77371 0.86038 1.25838 1.35945 1.42098 1.44176 1.51228 1.70829 2.13682 2.19575 2.67676 3.08401 3.29560 3.49895 3.57577 3.70916 3.76238 3.86343 4.06669 4.22938 4.30844 4.37015 4.39991 4.43507 4.58445 4.59759 4.64847 4.65516 4.76672 4.87958 4.92691 4.96550 5.05202 5.07184 5.08595 5.14863 5.24342 5.37832 5.49096 5.62025 5.64471 5.76510 5.84830 5.96935 6.17495 6.29394 6.43898 6.78712 6.84371 7.15965 7.42105 7.64808 8.23090 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.002382 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.225645 B =11754.190029 C =12659.449941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.273 5.273 3 N -0.127 5.127 4 N -0.304 5.304 5 C -0.036 4.036 6 C -0.006 4.006 7 C -0.034 4.034 8 C 0.173 3.827 9 H 0.066 0.934 10 N -0.714 5.714 11 C 0.695 3.305 12 O -0.614 6.614 13 N -0.667 5.667 14 C 0.190 3.810 15 C -0.238 4.238 16 C -0.065 4.065 17 C -0.264 4.264 18 C 0.080 3.920 19 C -0.483 4.483 20 H 0.044 0.956 21 C 0.039 3.961 22 N -0.859 5.859 23 Si 0.976 3.024 24 H -0.250 1.250 25 H -0.285 1.285 26 H -0.251 1.251 27 C -0.222 4.222 28 C -0.123 4.123 29 C -0.029 4.029 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.116 0.884 35 H 0.419 0.581 36 H 0.423 0.577 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.293 0.707 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.614 9.521 -10.652 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.065 5.065 3 N -0.105 5.105 4 N -0.167 5.167 5 C -0.177 4.177 6 C -0.142 4.142 7 C -0.074 4.074 8 C 0.066 3.934 9 H 0.085 0.915 10 N -0.371 5.371 11 C 0.396 3.604 12 O -0.493 6.493 13 N -0.316 5.316 14 C 0.096 3.904 15 C -0.259 4.259 16 C -0.083 4.083 17 C -0.283 4.283 18 C 0.077 3.923 19 C -0.513 4.513 20 H 0.062 0.938 21 C -0.173 4.173 22 N -0.486 5.486 23 Si 0.799 3.201 24 H -0.175 1.175 25 H -0.212 1.212 26 H -0.174 1.174 27 C -0.244 4.244 28 C -0.163 4.163 29 C -0.069 4.069 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.257 0.743 36 H 0.262 0.738 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.668 11.479 -9.856 28.938 hybrid contribution 0.289 -1.031 0.133 1.079 sum -24.379 10.448 -9.723 28.249 Atomic orbital electron populations 1.22837 0.69522 1.08227 1.06887 1.47231 1.10810 1.03536 1.44958 1.78493 0.96205 1.12643 1.23113 1.74752 1.10666 1.13463 1.17842 1.22013 0.96545 0.90980 1.08179 1.21820 0.90399 0.93069 1.08944 1.20364 0.97529 0.83248 1.06212 1.20627 0.94335 0.78378 1.00026 0.91534 1.44702 1.45320 1.04233 1.42877 1.16174 0.81445 0.81396 0.81413 1.91020 1.38634 1.80822 1.38785 1.42299 1.38355 1.02941 1.48038 1.17315 0.89048 0.89101 0.94958 1.20599 1.00581 0.94538 1.10170 1.20847 0.92594 0.98902 0.95968 1.21087 0.97523 0.97484 1.12241 1.17747 0.92350 0.91284 0.90923 1.19458 0.94809 1.25894 1.11118 0.93771 1.26925 0.96263 0.93564 1.00590 1.69709 1.12203 1.36883 1.29846 0.85368 0.79553 0.79492 0.75660 1.17485 1.21237 1.17441 1.20908 0.93425 0.98963 1.11100 1.21981 0.98354 0.94716 1.01202 1.19866 0.92553 0.91654 1.02839 0.87396 0.86985 0.84786 0.85125 0.86600 0.74290 0.73811 0.83517 0.84206 0.88585 0.89721 0.89390 0.92405 0.89008 0.89224 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.21 11.27 127.77 1.44 1.65 16 2 N -0.27 -4.30 3.73 -356.40 -1.33 -5.63 16 3 N -0.13 -3.16 13.19 37.02 0.49 -2.67 16 4 N -0.30 -8.79 12.40 -48.99 -0.61 -9.39 16 5 C -0.04 -0.85 7.11 41.75 0.30 -0.56 16 6 C -0.01 -0.10 6.76 41.50 0.28 0.18 16 7 C -0.03 -0.29 5.42 29.94 0.16 -0.13 16 8 C 0.17 3.03 2.43 45.18 0.11 3.13 16 9 H 0.07 1.66 7.55 -2.39 -0.02 1.64 16 10 N -0.71 -12.00 5.08 -456.96 -2.32 -14.33 16 11 C 0.70 20.80 8.25 179.05 1.48 22.28 16 12 O -0.61 -26.51 13.69 -3.97 -0.05 -26.56 16 13 N -0.67 -18.41 5.35 -317.33 -1.70 -20.11 16 14 C 0.19 7.38 6.27 38.10 0.24 7.62 16 15 C -0.24 -8.13 9.97 22.58 0.23 -7.90 16 16 C -0.06 -2.45 10.02 22.20 0.22 -2.23 16 17 C -0.26 -12.49 6.93 22.75 0.16 -12.33 16 18 C 0.08 4.34 5.18 -21.31 -0.11 4.23 16 19 C -0.48 -29.33 9.61 23.46 0.23 -29.11 16 20 H 0.04 2.93 8.06 -2.91 -0.02 2.91 16 21 C 0.04 2.25 5.46 85.25 0.47 2.72 16 22 N -0.86 -50.21 13.93 21.82 0.30 -49.91 16 23 Si 0.98 45.27 24.37 68.60 1.67 46.94 16 24 H -0.25 -10.54 6.76 99.48 0.67 -9.86 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.25 -11.88 6.51 99.48 0.65 -11.24 16 27 C -0.22 -11.13 8.39 22.85 0.19 -10.94 16 28 C -0.12 -2.46 5.47 30.78 0.17 -2.29 16 29 C -0.03 -0.66 6.30 29.96 0.19 -0.47 16 30 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 33 H 0.13 0.21 8.13 -2.39 -0.02 0.19 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.42 2.93 8.62 -92.70 -0.80 2.13 16 36 H 0.42 6.99 8.83 -92.70 -0.82 6.17 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.10 4.52 4.23 -2.91 -0.01 4.51 16 40 H 0.29 15.31 8.30 -92.71 -0.77 14.54 16 41 H 0.09 4.83 6.41 -2.91 -0.02 4.81 16 42 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 43 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -88.91 368.12 1.54 -87.37 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.65 Total: 18.46 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 5.74 Total: -24.16 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -5.16 Total: -102.04 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.56 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -88.91 1.54 -87.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.193 kcal (2) G-P(sol) polarization free energy of solvation -88.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds