Wall clock time and date at job start Wed Apr 1 2020 00:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46965 * 2 1 4 4 C 1.35300 * 126.47299 * 265.04288 * 3 2 1 5 5 N 1.30766 * 108.76603 * 180.27527 * 4 3 2 6 6 C 1.33476 * 109.09889 * 359.64186 * 5 4 3 7 7 C 1.35035 * 108.13037 * 0.26487 * 6 5 4 8 8 C 1.50621 * 124.84360 * 179.97438 * 7 6 5 9 9 C 1.53413 * 108.80398 * 342.34293 * 8 7 6 10 10 N 1.47060 * 109.08753 * 45.07406 * 9 8 7 11 11 C 1.34777 * 120.80412 * 115.69583 * 10 9 8 12 12 O 1.21573 * 120.00384 * 354.90930 * 11 10 9 13 13 N 1.34780 * 119.99481 * 174.90574 * 11 10 9 14 14 C 1.39462 * 119.99866 * 185.95635 * 13 11 10 15 15 C 1.38641 * 119.64833 * 18.32144 * 14 13 11 16 16 C 1.40824 * 118.67363 * 179.72084 * 15 14 13 17 17 C 1.41550 * 120.99576 * 180.30193 * 16 15 14 18 18 H 1.07997 * 119.99336 * 207.12355 * 17 16 15 19 19 C 1.40021 * 120.00379 * 27.11944 * 17 16 15 20 20 N 1.30749 * 120.00187 * 7.94957 * 19 17 16 21 21 Si 1.86800 * 120.00327 * 187.95028 * 19 17 16 22 22 H 1.48500 * 109.46933 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47309 * 119.99755 * 21 19 17 24 24 H 1.48498 * 109.47224 * 240.00035 * 21 19 17 25 25 C 1.41156 * 118.00327 * 0.53976 * 16 15 14 26 26 C 1.36589 * 119.12829 * 359.73925 * 25 16 15 27 27 N 1.32067 * 121.26133 * 359.97438 * 26 25 16 28 28 C 1.47399 * 118.38359 * 295.68248 * 10 9 8 29 29 H 1.09002 * 109.47216 * 60.00255 * 1 2 3 30 30 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47289 * 299.99899 * 1 2 3 32 32 H 1.09006 * 109.46993 * 240.00306 * 2 1 3 33 33 H 1.08992 * 109.47333 * 120.00299 * 2 1 3 34 34 H 1.07993 * 125.61480 * 0.03561 * 4 3 2 35 35 H 1.09001 * 109.58027 * 222.54010 * 8 7 6 36 36 H 1.09004 * 109.69166 * 102.20307 * 8 7 6 37 37 H 1.09002 * 109.53251 * 285.19626 * 9 8 7 38 38 H 1.08990 * 109.53840 * 164.96253 * 9 8 7 39 39 H 0.96995 * 120.00027 * 5.95543 * 13 11 10 40 40 H 1.08007 * 120.66625 * 359.97438 * 15 14 13 41 41 H 0.96995 * 120.00458 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.43660 * 179.75555 * 25 16 15 43 43 H 1.08004 * 119.36984 * 180.02562 * 26 25 16 44 44 H 1.09000 * 109.89072 * 284.84594 * 28 10 9 45 45 H 1.08994 * 109.95808 * 163.76479 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3750 2.1082 -1.0839 5 7 2.7634 3.2921 -0.6872 6 6 2.6618 3.3624 0.6418 7 6 2.1982 2.1764 1.0912 8 6 1.9432 1.8445 2.5381 9 6 2.6888 2.8573 3.4166 10 7 2.4700 4.2100 2.8826 11 6 1.8052 5.1365 3.6011 12 8 1.2982 4.8331 4.6635 13 7 1.7027 6.3994 3.1416 14 6 1.1245 7.3867 3.9390 15 6 1.0067 7.1830 5.3053 16 6 0.4250 8.1960 6.0918 17 6 0.2862 8.0425 7.4921 18 1 -0.5030 8.5607 8.0164 19 6 1.1720 7.2187 8.1973 20 7 2.2175 6.7156 7.5945 21 14 0.8600 6.8383 9.9994 22 1 -0.3801 7.5245 10.4426 23 1 0.7051 5.3720 10.1762 24 1 2.0073 7.3164 10.8120 25 6 -0.0202 9.3669 5.4411 26 6 0.1331 9.4749 4.0882 27 7 0.6887 8.5070 3.3820 28 6 2.9957 4.5278 1.5427 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.3475 1.7656 -2.1077 35 1 2.3058 0.8389 2.7515 36 1 0.8743 1.8989 2.7445 37 1 3.7550 2.6307 3.4094 38 1 2.3103 2.8028 4.4372 39 1 2.0311 6.6216 2.2564 40 1 1.3577 6.2674 5.7580 41 1 2.8314 6.1453 8.0831 42 1 -0.4758 10.1670 6.0057 43 1 -0.2057 10.3693 3.5864 44 1 4.0763 4.6620 1.5905 45 1 2.5258 5.4356 1.1644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932162350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:26 Heat of formation + Delta-G solvation = 66.435625 kcal Electronic energy + Delta-G solvation = -29477.532270 eV Core-core repulsion = 25495.793541 eV Total energy + Delta-G solvation = -3981.738728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.34781 -41.70506 -39.91903 -37.59768 -36.31159 -36.00749 -35.45465 -33.15041 -32.39148 -31.25681 -30.50029 -30.03275 -27.84677 -26.66861 -24.92167 -24.62081 -23.79781 -22.98323 -21.70141 -21.54277 -20.18853 -19.76494 -18.71340 -18.17093 -17.62974 -17.10791 -17.03205 -16.60229 -16.23155 -16.01460 -15.98144 -15.56196 -15.26312 -15.11026 -14.78637 -14.65247 -14.38989 -14.31181 -14.23492 -14.08168 -13.62259 -13.44062 -13.13525 -13.10323 -12.89907 -12.75483 -12.70022 -12.39106 -12.25807 -12.18873 -11.87815 -11.54154 -11.17997 -10.96806 -10.79464 -10.55167 -10.01823 -9.88869 -9.76167 -9.17806 -8.79777 -8.54593 -6.52839 0.82200 0.99390 1.05676 1.38440 1.38811 1.52958 1.55103 1.82062 2.03053 2.11595 2.21629 2.69654 2.85737 3.42693 3.62625 3.76540 3.78627 3.86132 4.05288 4.12851 4.14790 4.24022 4.25903 4.34790 4.40814 4.49388 4.62726 4.67670 4.76295 4.78923 4.85721 4.92334 4.92634 4.95702 5.17578 5.18445 5.26909 5.36598 5.43743 5.55167 5.63119 5.72133 5.81773 6.08748 6.29986 6.35099 6.59788 6.73295 6.86423 6.97815 7.07352 7.48865 7.69094 8.34342 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.002964 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.499419 B = 9444.002404 C =10562.122562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 N -0.445 5.445 4 C 0.182 3.818 5 N -0.517 5.517 6 C -0.043 4.043 7 C -0.016 4.016 8 C -0.047 4.047 9 C 0.132 3.868 10 N -0.619 5.619 11 C 0.708 3.292 12 O -0.590 6.590 13 N -0.657 5.657 14 C 0.332 3.668 15 C -0.251 4.251 16 C 0.099 3.901 17 C -0.483 4.483 18 H 0.084 0.916 19 C 0.028 3.972 20 N -0.811 5.811 21 Si 0.992 3.008 22 H -0.254 1.254 23 H -0.268 1.268 24 H -0.261 1.261 25 C -0.299 4.299 26 C 0.119 3.881 27 N -0.606 5.606 28 C 0.201 3.799 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.041 0.959 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.243 0.757 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.410 0.590 40 H 0.164 0.836 41 H 0.286 0.714 42 H 0.118 0.882 43 H 0.165 0.835 44 H 0.097 0.903 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 -18.420 -13.815 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.025 4.025 3 N -0.127 5.127 4 C -0.100 4.100 5 N -0.235 5.235 6 C -0.173 4.173 7 C -0.133 4.133 8 C -0.086 4.086 9 C 0.009 3.991 10 N -0.357 5.357 11 C 0.409 3.591 12 O -0.468 6.468 13 N -0.306 5.306 14 C 0.108 3.892 15 C -0.276 4.276 16 C 0.090 3.910 17 C -0.514 4.514 18 H 0.102 0.898 19 C -0.188 4.188 20 N -0.437 5.437 21 Si 0.812 3.188 22 H -0.177 1.177 23 H -0.193 1.193 24 H -0.186 1.186 25 C -0.323 4.323 26 C -0.034 4.034 27 N -0.328 5.328 28 C 0.077 3.923 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.259 0.741 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.248 0.752 40 H 0.181 0.819 41 H 0.097 0.903 42 H 0.136 0.864 43 H 0.182 0.818 44 H 0.114 0.886 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.002 -18.273 -14.479 23.506 hybrid contribution -0.376 -0.333 1.432 1.517 sum 2.626 -18.606 -13.048 22.876 Atomic orbital electron populations 1.22141 0.94148 1.04240 1.01995 1.22218 0.95537 0.77866 1.06884 1.45477 1.47758 1.13639 1.05833 1.25699 1.02033 0.87282 0.94948 1.69853 1.22172 1.20619 1.10892 1.20527 1.09490 0.96015 0.91288 1.20892 1.08420 0.92676 0.91294 1.20421 1.01145 1.00716 0.86367 1.21611 1.01271 0.78175 0.98019 1.47293 1.58459 1.12387 1.17571 1.15765 0.79459 0.80441 0.83410 1.90881 1.52295 1.79724 1.23855 1.42223 1.62073 1.06589 1.19759 1.18068 0.94965 0.88198 0.87942 1.22961 1.09880 1.03506 0.91251 1.18302 0.88287 0.89905 0.94473 1.19910 1.13688 1.25484 0.92358 0.89788 1.26932 0.93162 0.92756 1.05936 1.69843 1.09910 1.24045 1.39878 0.85020 0.79750 0.78787 0.75261 1.17716 1.19283 1.18598 1.21875 1.14434 0.99558 0.96460 1.21860 0.94605 0.95881 0.91101 1.66726 1.21799 1.03450 1.40785 1.19788 0.99717 0.94319 0.78476 0.92452 0.88144 0.93983 0.85532 0.87754 0.74136 0.86445 0.91222 0.88550 0.89336 0.75191 0.81919 0.90346 0.86404 0.81762 0.88552 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 71.98 0.74 -0.69 16 2 C 0.10 0.68 6.71 86.38 0.58 1.26 16 3 N -0.45 -7.21 2.74 -514.47 -1.41 -8.62 16 4 C 0.18 3.25 12.57 180.10 2.26 5.52 16 5 N -0.52 -13.54 11.25 -187.79 -2.11 -15.65 16 6 C -0.04 -1.16 7.08 41.68 0.30 -0.87 16 7 C -0.02 -0.35 6.77 41.12 0.28 -0.07 16 8 C -0.05 -0.95 6.19 29.96 0.19 -0.77 16 9 C 0.13 3.39 6.37 86.41 0.55 3.94 16 10 N -0.62 -19.97 2.94 -839.03 -2.47 -22.44 16 11 C 0.71 30.59 8.15 179.05 1.46 32.05 16 12 O -0.59 -30.60 12.59 -3.95 -0.05 -30.65 16 13 N -0.66 -29.11 5.32 -322.37 -1.72 -30.83 16 14 C 0.33 17.62 7.52 132.76 1.00 18.62 16 15 C -0.25 -14.80 7.49 23.00 0.17 -14.63 16 16 C 0.10 5.77 5.60 -21.11 -0.12 5.65 16 17 C -0.48 -27.43 9.14 23.52 0.21 -27.21 16 18 H 0.08 4.50 7.86 -2.91 -0.02 4.48 16 19 C 0.03 1.50 5.34 85.29 0.46 1.96 16 20 N -0.81 -45.31 10.67 21.84 0.23 -45.08 16 21 Si 0.99 40.05 29.57 68.60 2.03 42.08 16 22 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 C -0.30 -15.43 9.85 22.60 0.22 -15.21 16 26 C 0.12 5.65 11.10 84.27 0.94 6.58 16 27 N -0.61 -30.57 10.36 -194.27 -2.01 -32.58 16 28 C 0.20 5.59 6.63 85.57 0.57 6.15 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.13 0.17 8.13 -2.38 -0.02 0.15 16 33 H 0.10 0.51 7.86 -2.39 -0.02 0.50 16 34 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.12 1.50 7.91 -2.39 -0.02 1.48 16 36 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.09 2.64 7.03 -2.39 -0.02 2.63 16 39 H 0.41 15.51 6.45 -92.71 -0.60 14.91 16 40 H 0.16 10.11 3.38 -3.21 -0.01 10.10 16 41 H 0.29 14.50 8.29 -92.71 -0.77 13.74 16 42 H 0.12 5.48 8.06 -2.91 -0.02 5.46 16 43 H 0.17 6.25 8.06 -2.91 -0.02 6.23 16 44 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.08 2.39 5.98 -2.39 -0.01 2.38 16 Total: -1.00 -80.92 369.43 2.73 -78.18 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: 0.45 Total: 43.29 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 9.80 Total: 22.30 kcal Atomic # 7 Polarization: -145.71 SS G_CDS: -9.49 Total: -155.20 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -80.92 2.73 -78.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.619 kcal (2) G-P(sol) polarization free energy of solvation -80.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds