Wall clock time and date at job start Wed Apr 1 2020 00:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47379 * 2 1 4 4 C 1.35294 * 126.47413 * 264.97518 * 3 2 1 5 5 N 1.30763 * 108.77334 * 180.10613 * 4 3 2 6 6 C 1.33481 * 109.09410 * 0.03076 * 5 4 3 7 7 C 1.35033 * 108.13343 * 359.86511 * 6 5 4 8 8 C 1.50614 * 124.85118 * 180.22899 * 7 6 5 9 9 C 1.53413 * 108.80300 * 342.34223 * 8 7 6 10 10 N 1.47059 * 109.08780 * 45.06639 * 9 8 7 11 11 C 1.34774 * 120.80684 * 115.68532 * 10 9 8 12 12 O 1.21575 * 120.00311 * 4.62512 * 11 10 9 13 13 N 1.34778 * 119.99753 * 184.34949 * 11 10 9 14 14 C 1.39254 * 119.99958 * 174.59637 * 13 11 10 15 15 C 1.39691 * 119.57411 * 21.75460 * 14 13 11 16 16 C 1.38638 * 119.49413 * 179.72501 * 15 14 13 17 17 C 1.38357 * 118.67057 * 0.53416 * 16 15 14 18 18 C 1.40566 * 119.13203 * 359.72868 * 17 16 15 19 19 C 1.41336 * 119.79100 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99379 * 359.97438 * 19 18 17 21 21 C 1.40022 * 120.00078 * 179.97438 * 19 18 17 22 22 N 1.30735 * 120.00368 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99651 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47255 * 89.99704 * 23 21 19 25 25 H 1.48508 * 109.46874 * 209.99508 * 23 21 19 26 26 H 1.48495 * 109.46999 * 329.99350 * 23 21 19 27 27 N 1.31896 * 119.57695 * 202.02255 * 14 13 11 28 28 C 1.47403 * 118.38346 * 295.95482 * 10 9 8 29 29 H 1.08998 * 109.47182 * 59.99681 * 1 2 3 30 30 H 1.08993 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46785 * 300.00062 * 1 2 3 32 32 H 1.09002 * 109.46785 * 239.99937 * 2 1 3 33 33 H 1.08998 * 109.47182 * 120.00319 * 2 1 3 34 34 H 1.08002 * 125.61587 * 0.10938 * 4 3 2 35 35 H 1.08999 * 109.58477 * 222.54405 * 8 7 6 36 36 H 1.08998 * 109.69336 * 102.20403 * 8 7 6 37 37 H 1.08999 * 109.53580 * 285.18676 * 9 8 7 38 38 H 1.08998 * 109.53842 * 164.95143 * 9 8 7 39 39 H 0.97001 * 120.00231 * 354.59630 * 13 11 10 40 40 H 1.07995 * 120.24862 * 0.02562 * 15 14 13 41 41 H 1.07996 * 120.66645 * 180.24159 * 16 15 14 42 42 H 1.07999 * 120.43132 * 179.74673 * 17 16 15 43 43 H 0.96998 * 120.00552 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.89319 * 163.46578 * 28 10 9 45 45 H 1.09002 * 109.89311 * 284.58532 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3763 2.1076 -1.0837 5 7 2.7609 3.2929 -0.6875 6 6 2.6636 3.3618 0.6420 7 6 2.1983 2.1764 1.0912 8 6 1.9418 1.8450 2.5379 9 6 2.6878 2.8571 3.4169 10 7 2.4711 4.2099 2.8824 11 6 1.8067 5.1373 3.5999 12 8 1.4516 4.8877 4.7356 13 7 1.5407 6.3434 3.0604 14 6 0.7580 7.2605 3.7572 15 6 0.6313 7.1459 5.1436 16 6 -0.1437 8.0633 5.8363 17 6 -0.7812 9.0646 5.1255 18 6 -0.6189 9.1232 3.7305 19 6 -1.2634 10.1406 2.9907 20 1 -1.8785 10.8694 3.4974 21 6 -1.1043 10.2034 1.6010 22 7 -0.3593 9.3213 0.9877 23 14 -1.9555 11.5485 0.6234 24 1 -1.0638 12.7322 0.5297 25 1 -2.2617 11.0501 -0.7417 26 1 -3.2178 11.9324 1.3049 27 7 0.1415 8.2230 3.0989 28 6 2.9931 4.5250 1.5404 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3489 1.7651 -2.1076 35 1 2.3031 0.8391 2.7519 36 1 0.8728 1.9006 2.7435 37 1 3.7537 2.6292 3.4108 38 1 2.3083 2.8032 4.4372 39 1 1.8945 6.5726 2.1868 40 1 1.1372 6.3517 5.6723 41 1 -0.2516 7.9948 6.9087 42 1 -1.3953 9.7918 5.6359 43 1 -0.2488 9.3650 0.0250 44 1 2.5200 5.4310 1.1618 45 1 4.0737 4.6606 1.5852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932425100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:29 Heat of formation + Delta-G solvation = 96.886318 kcal Electronic energy + Delta-G solvation = -29383.823360 eV Core-core repulsion = 25403.405073 eV Total energy + Delta-G solvation = -3980.418287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.48415 -40.14347 -38.00564 -36.35419 -35.33369 -34.29957 -33.29166 -32.02555 -30.45338 -30.32056 -29.53176 -28.88120 -25.80996 -25.25449 -23.99456 -23.78464 -21.63246 -21.50971 -20.86882 -20.16192 -18.87336 -17.88972 -17.44785 -17.06044 -16.32026 -16.02764 -15.40530 -15.22048 -14.99721 -14.58423 -14.57428 -14.30625 -14.16557 -13.82021 -13.68202 -13.36696 -13.15694 -12.91166 -12.78943 -12.66735 -12.26715 -12.18007 -11.99060 -11.89274 -11.74362 -11.42494 -11.19451 -11.03185 -10.86961 -10.58353 -10.04602 -10.01782 -9.79510 -9.71868 -9.19616 -8.97037 -8.64246 -8.25878 -7.95573 -7.59601 -7.01234 -6.33573 -4.43405 1.84156 2.49782 2.72677 2.80473 2.98545 3.01493 3.13431 3.16621 3.31247 3.70008 4.00550 4.14660 4.19298 4.34965 4.45361 4.51589 4.69372 4.76782 4.85705 4.94500 5.06603 5.13100 5.18529 5.26229 5.45441 5.46911 5.62392 5.67467 5.73820 5.84101 5.98280 6.17114 6.22126 6.42989 6.51163 6.54908 6.81874 6.87618 7.01090 7.04795 7.12034 7.26117 7.57977 7.66530 7.95270 7.98138 8.10915 8.23677 8.45909 8.77163 8.94110 9.09190 10.13070 10.38723 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.003141 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.335550 B = 8912.203569 C =10385.604498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.451 5.451 4 C 0.175 3.825 5 N -0.475 5.475 6 C -0.011 4.011 7 C -0.013 4.013 8 C -0.059 4.059 9 C 0.138 3.862 10 N -0.630 5.630 11 C 0.717 3.283 12 O -0.568 6.568 13 N -0.657 5.657 14 C 0.371 3.629 15 C -0.314 4.314 16 C -0.051 4.051 17 C -0.291 4.291 18 C 0.280 3.720 19 C -0.436 4.436 20 H 0.084 0.916 21 C 0.071 3.929 22 N -0.722 5.722 23 Si 0.906 3.094 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.262 1.262 27 N -0.508 5.508 28 C 0.197 3.803 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.205 0.795 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.403 0.597 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.270 0.730 44 H 0.096 0.904 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -19.532 -4.781 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.134 5.134 4 C -0.107 4.107 5 N -0.192 5.192 6 C -0.141 4.141 7 C -0.129 4.129 8 C -0.098 4.098 9 C 0.014 3.986 10 N -0.369 5.369 11 C 0.418 3.582 12 O -0.445 6.445 13 N -0.305 5.305 14 C 0.136 3.864 15 C -0.339 4.339 16 C -0.076 4.076 17 C -0.314 4.314 18 C 0.153 3.847 19 C -0.469 4.469 20 H 0.102 0.898 21 C -0.153 4.153 22 N -0.343 5.343 23 Si 0.730 3.270 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.186 1.186 27 N -0.226 5.226 28 C 0.073 3.927 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.221 0.779 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.241 0.759 40 H 0.157 0.843 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.523 -19.238 -5.602 21.072 hybrid contribution -0.710 -0.159 0.016 0.728 sum 5.813 -19.397 -5.586 21.006 Atomic orbital electron populations 1.22162 0.93911 1.03170 1.03645 1.21839 0.95840 0.79912 1.04497 1.45241 1.48743 1.12493 1.06943 1.24966 1.04116 0.88137 0.93433 1.69934 1.20217 1.18227 1.10865 1.20451 1.07386 0.95384 0.90902 1.20779 1.08993 0.92805 0.90315 1.20514 1.02125 0.99695 0.87467 1.21358 0.99610 0.79253 0.98336 1.47304 1.60104 1.12223 1.17280 1.15579 0.78351 0.80052 0.84176 1.90777 1.57812 1.79257 1.16606 1.42415 1.52296 1.13416 1.22404 1.18249 0.90902 0.89693 0.87549 1.21835 1.12282 1.06331 0.93420 1.20825 0.95319 0.93836 0.97582 1.21702 1.10241 1.03648 0.95831 1.18161 0.88359 0.89783 0.88372 1.19541 1.25552 1.10136 0.91629 0.89761 1.26024 0.94531 0.96257 0.98500 1.70109 1.26024 1.28664 1.09552 0.86362 0.80448 0.81180 0.78988 1.19476 1.20271 1.18636 1.68015 1.12478 1.05325 1.36816 1.19715 0.99178 0.94454 0.79370 0.91668 0.90480 0.91628 0.88717 0.89201 0.77851 0.90056 0.90011 0.90943 0.87589 0.75902 0.84305 0.88424 0.88349 0.91838 0.88587 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.10 0.57 6.71 -4.05 -0.03 0.54 16 3 N -0.45 -4.39 2.74 -113.97 -0.31 -4.71 16 4 C 0.17 1.89 12.57 -89.93 -1.13 0.76 16 5 N -0.47 -6.87 11.25 -10.84 -0.12 -6.99 16 6 C -0.01 -0.15 7.06 -83.05 -0.59 -0.74 16 7 C -0.01 -0.16 6.77 -81.82 -0.55 -0.71 16 8 C -0.06 -0.59 6.19 -27.71 -0.17 -0.77 16 9 C 0.14 1.62 6.39 -3.52 -0.02 1.60 16 10 N -0.63 -9.52 2.95 -179.40 -0.53 -10.04 16 11 C 0.72 14.03 8.21 -86.92 -0.71 13.32 16 12 O -0.57 -12.48 12.43 5.30 0.07 -12.41 16 13 N -0.66 -14.18 5.31 -15.78 -0.08 -14.26 16 14 C 0.37 9.57 7.50 -154.99 -1.16 8.40 16 15 C -0.31 -7.92 8.91 -38.89 -0.35 -8.26 16 16 C -0.05 -1.24 10.15 -39.39 -0.40 -1.64 16 17 C -0.29 -7.52 9.83 -38.66 -0.38 -7.90 16 18 C 0.28 7.91 6.55 -85.00 -0.56 7.35 16 19 C -0.44 -11.93 9.14 -37.74 -0.34 -12.27 16 20 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 21 C 0.07 1.85 5.50 -17.35 -0.10 1.75 16 22 N -0.72 -19.36 11.46 55.55 0.64 -18.72 16 23 Si 0.91 18.97 29.56 -169.99 -5.02 13.94 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 27 N -0.51 -14.31 7.89 -10.26 -0.08 -14.39 16 28 C 0.20 2.77 6.68 -4.74 -0.03 2.74 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.31 8.13 -51.93 -0.42 -0.11 16 33 H 0.09 0.40 7.86 -51.93 -0.41 -0.01 16 34 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 1.31 7.00 -51.93 -0.36 0.95 16 39 H 0.40 8.09 6.39 -40.82 -0.26 7.83 16 40 H 0.14 3.46 5.16 -52.92 -0.27 3.18 16 41 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 44 H 0.10 1.47 5.84 -51.93 -0.30 1.16 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -35.05 370.78 -11.80 -46.85 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.79 Total: 11.59 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -6.14 Total: 3.56 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -0.49 Total: -69.12 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.05 -11.80 -46.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.739 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds