Wall clock time and date at job start Wed Apr 1 2020 00:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47379 * 2 1 4 4 C 1.35294 * 126.47413 * 264.97518 * 3 2 1 5 5 N 1.30763 * 108.77334 * 180.10613 * 4 3 2 6 6 C 1.33481 * 109.09410 * 0.03076 * 5 4 3 7 7 C 1.35033 * 108.13343 * 359.86511 * 6 5 4 8 8 C 1.50614 * 124.85118 * 180.22899 * 7 6 5 9 9 C 1.53413 * 108.80300 * 342.34223 * 8 7 6 10 10 N 1.47059 * 109.08780 * 45.06639 * 9 8 7 11 11 C 1.34774 * 120.80684 * 115.68532 * 10 9 8 12 12 O 1.21575 * 120.00311 * 4.62512 * 11 10 9 13 13 N 1.34778 * 119.99753 * 184.34949 * 11 10 9 14 14 C 1.39254 * 119.99958 * 174.59637 * 13 11 10 15 15 C 1.39691 * 119.57411 * 21.75460 * 14 13 11 16 16 C 1.38638 * 119.49413 * 179.72501 * 15 14 13 17 17 C 1.38357 * 118.67057 * 0.53416 * 16 15 14 18 18 C 1.40566 * 119.13203 * 359.72868 * 17 16 15 19 19 C 1.41336 * 119.79100 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99379 * 359.97438 * 19 18 17 21 21 C 1.40022 * 120.00078 * 179.97438 * 19 18 17 22 22 N 1.30735 * 120.00368 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99651 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47255 * 89.99704 * 23 21 19 25 25 H 1.48508 * 109.46874 * 209.99508 * 23 21 19 26 26 H 1.48495 * 109.46999 * 329.99350 * 23 21 19 27 27 N 1.31896 * 119.57695 * 202.02255 * 14 13 11 28 28 C 1.47403 * 118.38346 * 295.95482 * 10 9 8 29 29 H 1.08998 * 109.47182 * 59.99681 * 1 2 3 30 30 H 1.08993 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46785 * 300.00062 * 1 2 3 32 32 H 1.09002 * 109.46785 * 239.99937 * 2 1 3 33 33 H 1.08998 * 109.47182 * 120.00319 * 2 1 3 34 34 H 1.08002 * 125.61587 * 0.10938 * 4 3 2 35 35 H 1.08999 * 109.58477 * 222.54405 * 8 7 6 36 36 H 1.08998 * 109.69336 * 102.20403 * 8 7 6 37 37 H 1.08999 * 109.53580 * 285.18676 * 9 8 7 38 38 H 1.08998 * 109.53842 * 164.95143 * 9 8 7 39 39 H 0.97001 * 120.00231 * 354.59630 * 13 11 10 40 40 H 1.07995 * 120.24862 * 0.02562 * 15 14 13 41 41 H 1.07996 * 120.66645 * 180.24159 * 16 15 14 42 42 H 1.07999 * 120.43132 * 179.74673 * 17 16 15 43 43 H 0.96998 * 120.00552 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.89319 * 163.46578 * 28 10 9 45 45 H 1.09002 * 109.89311 * 284.58532 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3763 2.1076 -1.0837 5 7 2.7609 3.2929 -0.6875 6 6 2.6636 3.3618 0.6420 7 6 2.1983 2.1764 1.0912 8 6 1.9418 1.8450 2.5379 9 6 2.6878 2.8571 3.4169 10 7 2.4711 4.2099 2.8824 11 6 1.8067 5.1373 3.5999 12 8 1.4516 4.8877 4.7356 13 7 1.5407 6.3434 3.0604 14 6 0.7580 7.2605 3.7572 15 6 0.6313 7.1459 5.1436 16 6 -0.1437 8.0633 5.8363 17 6 -0.7812 9.0646 5.1255 18 6 -0.6189 9.1232 3.7305 19 6 -1.2634 10.1406 2.9907 20 1 -1.8785 10.8694 3.4974 21 6 -1.1043 10.2034 1.6010 22 7 -0.3593 9.3213 0.9877 23 14 -1.9555 11.5485 0.6234 24 1 -1.0638 12.7322 0.5297 25 1 -2.2617 11.0501 -0.7417 26 1 -3.2178 11.9324 1.3049 27 7 0.1415 8.2230 3.0989 28 6 2.9931 4.5250 1.5404 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3489 1.7651 -2.1076 35 1 2.3031 0.8391 2.7519 36 1 0.8728 1.9006 2.7435 37 1 3.7537 2.6292 3.4108 38 1 2.3083 2.8032 4.4372 39 1 1.8945 6.5726 2.1868 40 1 1.1372 6.3517 5.6723 41 1 -0.2516 7.9948 6.9087 42 1 -1.3953 9.7918 5.6359 43 1 -0.2488 9.3650 0.0250 44 1 2.5200 5.4310 1.1618 45 1 4.0737 4.6606 1.5852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932425100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:28 Heat of formation + Delta-G solvation = 76.850602 kcal Electronic energy + Delta-G solvation = -29384.692174 eV Core-core repulsion = 25403.405073 eV Total energy + Delta-G solvation = -3981.287101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.35649 -41.70726 -39.81741 -37.64941 -36.19861 -35.91977 -35.15386 -33.13794 -32.29781 -31.32451 -30.80124 -30.37130 -27.48452 -26.62575 -24.91858 -24.62679 -23.48560 -23.19229 -21.72894 -21.54800 -20.23898 -19.24394 -19.15882 -18.16160 -17.85467 -17.06872 -16.81793 -16.52950 -16.36548 -16.14373 -15.94529 -15.52852 -15.30980 -15.07091 -14.77678 -14.66774 -14.38210 -14.20157 -14.08835 -13.79195 -13.61606 -13.45942 -13.11925 -12.93989 -12.87177 -12.73607 -12.62191 -12.58423 -12.33227 -12.20022 -11.83810 -11.61726 -11.05677 -10.95240 -10.74179 -10.55294 -9.99379 -9.88700 -9.60614 -9.17614 -8.94131 -8.28411 -6.49489 0.83368 0.98872 1.14187 1.38895 1.42029 1.54308 1.57191 1.81947 2.03104 2.08558 2.24538 2.68709 2.89603 3.42982 3.63388 3.77166 3.86966 3.93482 4.04966 4.13476 4.22257 4.26905 4.33352 4.37051 4.39826 4.48286 4.61302 4.64927 4.72076 4.77886 4.86191 4.88208 4.93020 4.95446 5.04086 5.17920 5.23659 5.29840 5.42832 5.56521 5.67115 5.70247 5.79695 6.00852 6.16753 6.29900 6.30567 6.69027 6.82394 6.98567 7.08009 7.42032 8.12764 8.46429 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.003141 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.335550 B = 8912.203569 C =10385.604498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.445 5.445 4 C 0.180 3.820 5 N -0.521 5.521 6 C -0.046 4.046 7 C -0.015 4.015 8 C -0.050 4.050 9 C 0.132 3.868 10 N -0.618 5.618 11 C 0.714 3.286 12 O -0.594 6.594 13 N -0.659 5.659 14 C 0.361 3.639 15 C -0.325 4.325 16 C -0.048 4.048 17 C -0.308 4.308 18 C 0.245 3.755 19 C -0.466 4.466 20 H 0.093 0.907 21 C 0.025 3.975 22 N -0.756 5.756 23 Si 0.988 3.012 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.255 1.255 27 N -0.537 5.537 28 C 0.199 3.801 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.241 0.759 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.407 0.593 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.277 0.723 44 H 0.075 0.925 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.493 -21.491 -5.664 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.127 5.127 4 C -0.102 4.102 5 N -0.239 5.239 6 C -0.175 4.175 7 C -0.132 4.132 8 C -0.089 4.089 9 C 0.009 3.991 10 N -0.355 5.355 11 C 0.416 3.584 12 O -0.473 6.473 13 N -0.308 5.308 14 C 0.125 3.875 15 C -0.350 4.350 16 C -0.073 4.073 17 C -0.331 4.331 18 C 0.119 3.881 19 C -0.498 4.498 20 H 0.111 0.889 21 C -0.197 4.197 22 N -0.378 5.378 23 Si 0.809 3.191 24 H -0.186 1.186 25 H -0.195 1.195 26 H -0.179 1.179 27 N -0.256 5.256 28 C 0.075 3.925 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.257 0.743 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.245 0.755 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.132 0.868 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.642 -21.274 -6.487 23.212 hybrid contribution -0.690 0.290 0.263 0.793 sum 5.952 -20.985 -6.224 22.683 Atomic orbital electron populations 1.22146 0.94295 1.04254 1.01900 1.22223 0.95401 0.77804 1.06998 1.45489 1.47672 1.13712 1.05827 1.25663 1.02270 0.87269 0.95000 1.69858 1.22301 1.20561 1.11201 1.20466 1.09725 0.96115 0.91237 1.20966 1.08139 0.92580 0.91550 1.20485 1.01212 1.01110 0.86060 1.21687 1.01594 0.77588 0.98186 1.47333 1.58395 1.12567 1.17254 1.15692 0.78551 0.79972 0.84161 1.90728 1.59119 1.79665 1.17805 1.42400 1.52074 1.13807 1.22484 1.18593 0.90829 0.89772 0.88315 1.22057 1.12756 1.06762 0.93429 1.21205 0.94027 0.92715 0.99311 1.21898 1.11159 1.04744 0.95295 1.18699 0.89073 0.90517 0.89842 1.19939 1.26328 1.10607 0.92939 0.88920 1.26984 0.94921 0.98698 0.99050 1.70215 1.26967 1.30386 1.10200 0.85121 0.79261 0.77619 0.77141 1.18628 1.19541 1.17872 1.68033 1.13584 1.06312 1.37705 1.19700 0.99764 0.94166 0.78823 0.92834 0.87989 0.93914 0.85655 0.87346 0.74344 0.86047 0.91267 0.88184 0.88272 0.75458 0.83903 0.84940 0.86762 0.91231 0.90737 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 71.98 0.74 -0.84 16 2 C 0.10 0.73 6.71 86.38 0.58 1.31 16 3 N -0.45 -7.62 2.74 -514.48 -1.41 -9.03 16 4 C 0.18 3.57 12.57 180.11 2.26 5.83 16 5 N -0.52 -14.93 11.25 -188.19 -2.12 -17.05 16 6 C -0.05 -1.29 7.06 41.55 0.29 -0.99 16 7 C -0.02 -0.34 6.77 41.11 0.28 -0.06 16 8 C -0.05 -0.91 6.19 29.96 0.19 -0.73 16 9 C 0.13 2.92 6.39 86.41 0.55 3.48 16 10 N -0.62 -18.83 2.95 -839.76 -2.48 -21.31 16 11 C 0.71 28.78 8.21 179.05 1.47 30.25 16 12 O -0.59 -26.64 12.43 -3.95 -0.05 -26.69 16 13 N -0.66 -29.74 5.31 -322.12 -1.71 -31.45 16 14 C 0.36 19.30 7.50 133.26 1.00 20.30 16 15 C -0.33 -16.75 8.91 22.72 0.20 -16.55 16 16 C -0.05 -2.35 10.15 22.39 0.23 -2.12 16 17 C -0.31 -16.17 9.83 22.87 0.22 -15.95 16 18 C 0.25 14.31 6.55 40.19 0.26 14.57 16 19 C -0.47 -26.08 9.14 23.47 0.21 -25.86 16 20 H 0.09 4.81 7.85 -2.91 -0.02 4.79 16 21 C 0.02 1.31 5.50 85.29 0.47 1.78 16 22 N -0.76 -41.65 11.46 21.84 0.25 -41.40 16 23 Si 0.99 39.09 29.56 68.60 2.03 41.12 16 24 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 25 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 26 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 27 N -0.54 -31.48 7.89 -186.36 -1.47 -32.95 16 28 C 0.20 5.75 6.68 85.44 0.57 6.32 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.13 0.25 8.13 -2.39 -0.02 0.23 16 33 H 0.11 0.48 7.86 -2.39 -0.02 0.46 16 34 H 0.24 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.12 1.27 7.91 -2.39 -0.02 1.25 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 2.38 7.00 -2.39 -0.02 2.37 16 39 H 0.41 17.38 6.39 -92.71 -0.59 16.79 16 40 H 0.14 7.23 5.16 -9.70 -0.05 7.18 16 41 H 0.13 5.40 8.06 -2.91 -0.02 5.37 16 42 H 0.11 5.44 8.06 -2.91 -0.02 5.42 16 43 H 0.28 13.87 8.29 -92.71 -0.77 13.10 16 44 H 0.07 2.44 5.84 -2.39 -0.01 2.43 16 45 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -79.62 370.78 2.99 -76.64 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: 0.41 Total: 41.39 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 9.53 Total: 20.73 kcal Atomic # 7 Polarization: -144.25 SS G_CDS: -8.94 Total: -153.18 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -79.62 2.99 -76.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.489 kcal (2) G-P(sol) polarization free energy of solvation -79.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds