Wall clock time and date at job start Wed Apr 1 2020 00:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46508 * 109.46893 * 2 1 4 4 C 1.34775 * 120.00035 * 269.29245 * 3 2 1 5 5 O 1.21600 * 119.99879 * 186.49929 * 4 3 2 6 6 C 1.47409 * 119.99739 * 6.48946 * 4 3 2 7 7 C 1.41330 * 126.41376 * 8.03780 * 6 4 3 8 8 N 1.30481 * 108.06795 * 179.84934 * 7 6 4 9 9 N 1.39932 * 108.91404 * 0.41116 * 8 7 6 10 10 C 1.40168 * 125.77230 * 179.70109 * 9 8 7 11 11 C 1.39266 * 120.48572 * 0.03952 * 10 9 8 12 12 C 1.38507 * 118.36500 * 180.02562 * 11 10 9 13 13 C 1.38270 * 119.23345 * 0.02562 * 12 11 10 14 14 N 1.31868 * 120.90741 * 0.02562 * 13 12 11 15 15 C 1.31817 * 121.79520 * 359.65816 * 14 13 12 16 16 C 1.34541 * 108.45868 * 359.73073 * 9 8 7 17 17 C 1.46495 * 119.99760 * 89.29158 * 3 2 1 18 18 C 1.53944 * 113.74264 * 141.26049 * 17 3 2 19 19 N 1.47809 * 86.03824 * 90.88094 * 18 17 3 20 20 C 1.36936 * 134.45487 * 204.64905 * 19 18 17 21 21 H 1.07998 * 120.00288 * 179.86788 * 20 19 18 22 22 C 1.38812 * 120.00208 * 359.86254 * 20 19 18 23 23 N 1.31621 * 119.99739 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00408 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46752 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47084 * 119.99882 * 24 22 20 27 27 H 1.48495 * 109.47460 * 240.00454 * 24 22 20 28 28 C 1.47570 * 91.05286 * 24.55154 * 19 18 17 29 29 H 1.08995 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46647 * 300.00028 * 1 2 3 31 31 H 1.09002 * 109.47248 * 59.99765 * 1 2 3 32 32 H 1.08997 * 109.46908 * 240.00215 * 2 1 3 33 33 H 1.08999 * 109.46886 * 119.99568 * 2 1 3 34 34 H 1.07997 * 125.96703 * 359.97438 * 7 6 4 35 35 H 1.08000 * 120.81304 * 359.97438 * 11 10 9 36 36 H 1.07998 * 120.38196 * 180.02562 * 12 11 10 37 37 H 1.07995 * 119.54850 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.66153 * 180.31335 * 15 14 13 39 39 H 1.07995 * 126.31005 * 180.02562 * 16 9 8 40 40 H 1.09004 * 112.95088 * 9.66065 * 17 3 2 41 41 H 1.09001 * 113.77143 * 205.14588 * 18 17 3 42 42 H 1.09003 * 113.76498 * 336.54252 * 18 17 3 43 43 H 0.97000 * 119.99690 * 179.97438 * 23 22 20 44 44 H 1.09004 * 113.77052 * 221.15525 * 28 19 18 45 45 H 1.09000 * 113.77068 * 89.75463 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2566 2.0119 -1.1671 5 8 2.7723 3.1131 -1.1690 6 6 1.8920 1.3664 -2.4413 7 6 1.1501 0.1734 -2.5953 8 7 1.0341 -0.0690 -3.8721 9 7 1.6943 0.9369 -4.5866 10 6 1.7952 1.0192 -5.9822 11 6 1.2096 0.0488 -6.7914 12 6 1.3368 0.1730 -8.1650 13 6 2.0357 1.2473 -8.6840 14 7 2.5795 2.1489 -7.8900 15 6 2.4768 2.0714 -6.5782 16 6 2.2166 1.8112 -3.7074 17 6 2.2477 2.0771 1.2686 18 6 3.4997 2.9728 1.2668 19 7 2.5999 4.0541 0.8129 20 6 2.7756 5.2164 0.1106 21 1 1.9292 5.8533 -0.0999 22 6 4.0416 5.5762 -0.3307 23 7 5.0731 4.7998 -0.0744 24 14 4.2812 7.1615 -1.2893 25 1 2.9739 7.8488 -1.4437 26 1 5.2215 8.0462 -0.5558 27 1 4.8385 6.8498 -2.6300 28 6 1.4366 3.3771 1.4180 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.7476 -0.4309 -1.7958 35 1 0.6703 -0.7807 -6.3584 36 1 0.8952 -0.5607 -8.8230 37 1 2.1384 1.3489 -9.7542 38 1 2.9315 2.8319 -5.9606 39 1 2.7846 2.6977 -3.9478 40 1 2.1816 1.4169 2.1335 41 1 3.9220 3.1396 2.2577 42 1 4.2467 2.6821 0.5281 43 1 5.9577 5.0510 -0.3831 44 1 0.5394 3.4086 0.7998 45 1 1.2516 3.6629 2.4534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950492803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:53 Heat of formation + Delta-G solvation = 216.430766 kcal Electronic energy + Delta-G solvation = -30189.678720 eV Core-core repulsion = 26214.444269 eV Total energy + Delta-G solvation = -3975.234451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.82225 -40.25748 -39.35818 -36.29320 -35.43678 -33.98433 -32.58388 -31.81814 -30.35820 -29.87181 -29.44522 -27.15618 -24.84517 -24.58917 -24.18586 -23.25672 -22.98512 -21.58875 -21.22255 -19.78159 -18.69669 -17.50982 -17.01108 -16.71929 -16.49061 -15.91547 -15.65976 -15.57154 -14.72048 -14.50104 -14.40782 -14.37942 -13.87365 -13.62806 -13.45744 -13.43180 -13.16561 -12.83496 -12.49670 -12.35669 -12.12036 -12.03875 -11.60577 -11.29620 -11.12167 -11.08219 -10.95430 -10.70745 -10.62537 -10.38924 -10.04091 -9.95315 -9.91315 -9.55974 -9.22447 -9.15464 -8.69787 -8.25803 -8.24305 -7.72084 -6.35459 -5.38601 -2.64062 0.38565 0.83078 1.93599 2.10649 2.33885 3.47534 3.55797 3.58367 3.61743 3.63521 4.09606 4.19321 4.22623 4.35938 4.57472 4.73402 4.74613 4.81492 5.01967 5.05202 5.12904 5.22394 5.27870 5.39372 5.43995 5.52390 5.64272 5.70899 5.73872 5.76851 5.82810 5.86032 5.90725 6.09538 6.10515 6.28217 6.38807 6.47186 6.65313 6.71718 6.87386 7.10248 7.43378 7.46980 7.56914 7.65596 7.93040 8.24474 8.33946 9.34373 9.38300 10.10449 10.96582 11.80511 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010334 B = 0.004144 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.868913 B = 6755.097496 C = 9094.642582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.095 3.905 3 N -0.598 5.598 4 C 0.542 3.458 5 O -0.404 6.404 6 C -0.251 4.251 7 C 0.058 3.942 8 N -0.303 5.303 9 N -0.320 5.320 10 C 0.116 3.884 11 C -0.078 4.078 12 C -0.149 4.149 13 C 0.082 3.918 14 N -0.455 5.455 15 C 0.087 3.913 16 C 0.114 3.886 17 C 0.098 3.902 18 C 0.160 3.840 19 N -0.582 5.582 20 C -0.177 4.177 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.917 5.917 24 Si 0.894 3.106 25 H -0.285 1.285 26 H -0.297 1.297 27 H -0.295 1.295 28 C 0.102 3.898 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.192 0.808 40 H 0.077 0.923 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.243 0.757 44 H 0.037 0.963 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.489 -16.020 -9.314 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.029 4.029 3 N -0.334 5.334 4 C 0.325 3.675 5 O -0.269 6.269 6 C -0.265 4.265 7 C -0.129 4.129 8 N -0.121 5.121 9 N -0.094 5.094 10 C 0.020 3.980 11 C -0.105 4.105 12 C -0.169 4.169 13 C -0.075 4.075 14 N -0.163 5.163 15 C -0.074 4.074 16 C -0.030 4.030 17 C -0.007 4.007 18 C 0.034 3.966 19 N -0.308 5.308 20 C -0.305 4.305 21 H 0.085 0.915 22 C -0.193 4.193 23 N -0.567 5.567 24 Si 0.727 3.273 25 H -0.211 1.211 26 H -0.225 1.225 27 H -0.223 1.223 28 C -0.026 4.026 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.236 0.764 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.180 0.820 38 H 0.183 0.817 39 H 0.209 0.791 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.002 -15.172 -10.833 20.702 hybrid contribution -0.131 0.621 0.498 0.807 sum -9.133 -14.551 -10.335 20.048 Atomic orbital electron populations 1.22503 0.96875 1.01800 1.03394 1.21891 0.93664 0.84444 1.02943 1.47191 1.68409 1.12603 1.05225 1.17408 0.81974 0.86299 0.81772 1.91470 1.35090 1.15503 1.84814 1.20888 1.10724 0.99990 0.94874 1.25635 0.96707 0.96365 0.94199 1.77164 1.18796 1.10631 1.05496 1.45498 1.40928 1.19532 1.03431 1.18709 1.01006 0.98220 0.80025 1.21377 0.97859 0.98192 0.93103 1.22107 1.00174 0.99820 0.94802 1.22882 0.93957 0.90293 1.00417 1.67790 1.17800 1.26985 1.03737 1.22717 0.96969 0.96116 0.91571 1.23074 0.96409 0.95159 0.88404 1.23043 1.00907 0.92845 0.83874 1.22515 0.92676 0.84391 0.97023 1.45558 1.02032 1.23168 1.60009 1.18633 0.92854 0.94387 1.24656 0.91539 1.24439 0.95646 0.97850 1.01379 1.69795 0.98232 1.37238 1.51393 0.86302 0.77143 0.83927 0.79933 1.21068 1.22490 1.22282 1.22993 0.93034 0.90578 0.95991 0.91786 0.91485 0.91753 0.89954 0.90692 0.76446 0.83278 0.83806 0.82034 0.81724 0.79105 0.90504 0.95669 0.90170 0.94707 0.94494 0.94773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 8.76 37.16 0.33 -1.51 16 2 C 0.09 1.10 5.60 -4.03 -0.02 1.07 16 3 N -0.60 -10.09 2.73 -169.17 -0.46 -10.56 16 4 C 0.54 10.83 7.18 -12.53 -0.09 10.74 16 5 O -0.40 -10.21 10.40 5.28 0.05 -10.15 16 6 C -0.25 -4.19 5.92 -105.05 -0.62 -4.81 16 7 C 0.06 0.79 8.61 -16.95 -0.15 0.64 16 8 N -0.30 -4.29 11.85 30.87 0.37 -3.93 16 9 N -0.32 -4.59 3.77 -10.11 -0.04 -4.63 16 10 C 0.12 1.46 6.70 -83.45 -0.56 0.90 16 11 C -0.08 -0.80 9.77 -39.10 -0.38 -1.18 16 12 C -0.15 -1.19 10.10 -39.47 -0.40 -1.58 16 13 C 0.08 0.74 11.18 -17.52 -0.20 0.54 16 14 N -0.46 -5.48 10.35 -13.10 -0.14 -5.62 16 15 C 0.09 1.08 10.62 -17.35 -0.18 0.89 16 16 C 0.11 1.81 10.63 -16.43 -0.17 1.64 16 17 C 0.10 1.81 4.72 -70.15 -0.33 1.47 16 18 C 0.16 3.83 6.45 -2.84 -0.02 3.81 16 19 N -0.58 -15.16 2.11 -177.89 -0.38 -15.53 16 20 C -0.18 -5.17 8.77 -15.06 -0.13 -5.30 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C 0.00 0.06 4.98 -17.43 -0.09 -0.02 16 23 N -0.92 -28.17 11.37 55.49 0.63 -27.54 16 24 Si 0.89 23.48 29.55 -169.99 -5.02 18.45 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 27 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 28 C 0.10 2.12 8.43 -2.97 -0.03 2.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.72 6.27 -51.93 -0.33 0.39 16 32 H 0.08 0.90 4.79 -51.93 -0.25 0.66 16 33 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 34 H 0.22 2.33 3.21 -52.49 -0.17 2.16 16 35 H 0.15 1.43 7.77 -52.49 -0.41 1.02 16 36 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.17 1.94 6.74 -52.49 -0.35 1.58 16 39 H 0.19 2.93 7.03 -52.49 -0.37 2.57 16 40 H 0.08 1.15 7.97 -51.93 -0.41 0.73 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 2.19 6.32 -51.93 -0.33 1.86 16 43 H 0.24 7.34 8.31 -40.82 -0.34 7.01 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -36.60 362.91 -8.09 -44.69 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.53 Total: -0.05 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -3.04 Total: 9.39 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -0.01 Total: -67.80 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.05 Total: -10.15 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.60 -8.09 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950492803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 261.123 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 224.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 216.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds