Wall clock time and date at job start Wed Apr 1 2020 00:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46508 * 109.46893 * 2 1 4 4 C 1.34775 * 120.00035 * 269.29245 * 3 2 1 5 5 O 1.21600 * 119.99879 * 186.49929 * 4 3 2 6 6 C 1.47409 * 119.99739 * 6.48946 * 4 3 2 7 7 C 1.41330 * 126.41376 * 8.03780 * 6 4 3 8 8 N 1.30481 * 108.06795 * 179.84934 * 7 6 4 9 9 N 1.39932 * 108.91404 * 0.41116 * 8 7 6 10 10 C 1.40168 * 125.77230 * 179.70109 * 9 8 7 11 11 C 1.39266 * 120.48572 * 0.03952 * 10 9 8 12 12 C 1.38507 * 118.36500 * 180.02562 * 11 10 9 13 13 C 1.38270 * 119.23345 * 0.02562 * 12 11 10 14 14 N 1.31868 * 120.90741 * 0.02562 * 13 12 11 15 15 C 1.31817 * 121.79520 * 359.65816 * 14 13 12 16 16 C 1.34541 * 108.45868 * 359.73073 * 9 8 7 17 17 C 1.46495 * 119.99760 * 89.29158 * 3 2 1 18 18 C 1.53944 * 113.74264 * 141.26049 * 17 3 2 19 19 N 1.47809 * 86.03824 * 90.88094 * 18 17 3 20 20 C 1.36936 * 134.45487 * 204.64905 * 19 18 17 21 21 H 1.07998 * 120.00288 * 179.86788 * 20 19 18 22 22 C 1.38812 * 120.00208 * 359.86254 * 20 19 18 23 23 N 1.31621 * 119.99739 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00408 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46752 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47084 * 119.99882 * 24 22 20 27 27 H 1.48495 * 109.47460 * 240.00454 * 24 22 20 28 28 C 1.47570 * 91.05286 * 24.55154 * 19 18 17 29 29 H 1.08995 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46647 * 300.00028 * 1 2 3 31 31 H 1.09002 * 109.47248 * 59.99765 * 1 2 3 32 32 H 1.08997 * 109.46908 * 240.00215 * 2 1 3 33 33 H 1.08999 * 109.46886 * 119.99568 * 2 1 3 34 34 H 1.07997 * 125.96703 * 359.97438 * 7 6 4 35 35 H 1.08000 * 120.81304 * 359.97438 * 11 10 9 36 36 H 1.07998 * 120.38196 * 180.02562 * 12 11 10 37 37 H 1.07995 * 119.54850 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.66153 * 180.31335 * 15 14 13 39 39 H 1.07995 * 126.31005 * 180.02562 * 16 9 8 40 40 H 1.09004 * 112.95088 * 9.66065 * 17 3 2 41 41 H 1.09001 * 113.77143 * 205.14588 * 18 17 3 42 42 H 1.09003 * 113.76498 * 336.54252 * 18 17 3 43 43 H 0.97000 * 119.99690 * 179.97438 * 23 22 20 44 44 H 1.09004 * 113.77052 * 221.15525 * 28 19 18 45 45 H 1.09000 * 113.77068 * 89.75463 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2566 2.0119 -1.1671 5 8 2.7723 3.1131 -1.1690 6 6 1.8920 1.3664 -2.4413 7 6 1.1501 0.1734 -2.5953 8 7 1.0341 -0.0690 -3.8721 9 7 1.6943 0.9369 -4.5866 10 6 1.7952 1.0192 -5.9822 11 6 1.2096 0.0488 -6.7914 12 6 1.3368 0.1730 -8.1650 13 6 2.0357 1.2473 -8.6840 14 7 2.5795 2.1489 -7.8900 15 6 2.4768 2.0714 -6.5782 16 6 2.2166 1.8112 -3.7074 17 6 2.2477 2.0771 1.2686 18 6 3.4997 2.9728 1.2668 19 7 2.5999 4.0541 0.8129 20 6 2.7756 5.2164 0.1106 21 1 1.9292 5.8533 -0.0999 22 6 4.0416 5.5762 -0.3307 23 7 5.0731 4.7998 -0.0744 24 14 4.2812 7.1615 -1.2893 25 1 2.9739 7.8488 -1.4437 26 1 5.2215 8.0462 -0.5558 27 1 4.8385 6.8498 -2.6300 28 6 1.4366 3.3771 1.4180 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.7476 -0.4309 -1.7958 35 1 0.6703 -0.7807 -6.3584 36 1 0.8952 -0.5607 -8.8230 37 1 2.1384 1.3489 -9.7542 38 1 2.9315 2.8319 -5.9606 39 1 2.7846 2.6977 -3.9478 40 1 2.1816 1.4169 2.1335 41 1 3.9220 3.1396 2.2577 42 1 4.2467 2.6821 0.5281 43 1 5.9577 5.0510 -0.3831 44 1 0.5394 3.4086 0.7998 45 1 1.2516 3.6629 2.4534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950492803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:51 Heat of formation + Delta-G solvation = 192.119419 kcal Electronic energy + Delta-G solvation = -30190.732939 eV Core-core repulsion = 26214.444269 eV Total energy + Delta-G solvation = -3976.288670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.93377 -41.29445 -40.71302 -37.95318 -36.73485 -35.04215 -33.87455 -33.39060 -31.51972 -31.16332 -30.43968 -29.06426 -26.38948 -26.11349 -25.05861 -24.73118 -24.07941 -22.89086 -22.26702 -21.25935 -19.93495 -18.72225 -18.56200 -17.97193 -17.64492 -17.08190 -16.73935 -16.68379 -16.64795 -16.00431 -15.74456 -15.40699 -15.31361 -15.09149 -14.77908 -14.37965 -14.30032 -14.22866 -14.07729 -13.31320 -13.25279 -13.12844 -13.02118 -12.93799 -12.79912 -12.49198 -12.39482 -12.25606 -12.15454 -11.84154 -11.64713 -11.40411 -11.24638 -10.83307 -10.73831 -10.67432 -10.27392 -10.04682 -9.36031 -9.19086 -8.38824 -7.61608 -4.84210 -0.54311 0.03504 0.81254 1.04362 1.18397 1.42619 1.44099 1.51772 2.28905 2.61697 2.64802 2.76695 3.21055 3.27989 3.53476 3.58166 3.63963 3.70132 3.82293 3.90445 3.95787 4.04990 4.17278 4.27467 4.30203 4.47959 4.50497 4.54160 4.56473 4.70327 4.82194 4.89299 4.89928 4.96632 4.98084 5.08206 5.11133 5.29323 5.36695 5.39110 5.49900 5.51964 5.74617 5.80406 6.14946 6.28153 6.32566 6.75281 6.87107 7.17760 7.87553 7.93729 8.86706 9.57297 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010334 B = 0.004144 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.868913 B = 6755.097496 C = 9094.642582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 N -0.596 5.596 4 C 0.537 3.463 5 O -0.473 6.473 6 C -0.273 4.273 7 C 0.075 3.925 8 N -0.303 5.303 9 N -0.314 5.314 10 C 0.086 3.914 11 C -0.078 4.078 12 C -0.130 4.130 13 C 0.085 3.915 14 N -0.483 5.483 15 C 0.071 3.929 16 C 0.104 3.896 17 C 0.128 3.872 18 C 0.155 3.845 19 N -0.608 5.608 20 C -0.171 4.171 21 H 0.056 0.944 22 C -0.051 4.051 23 N -0.944 5.944 24 Si 0.947 3.053 25 H -0.276 1.276 26 H -0.297 1.297 27 H -0.303 1.303 28 C 0.103 3.897 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.250 0.750 35 H 0.159 0.841 36 H 0.188 0.812 37 H 0.198 0.802 38 H 0.154 0.846 39 H 0.181 0.819 40 H 0.131 0.869 41 H 0.019 0.981 42 H 0.038 0.962 43 H 0.232 0.768 44 H 0.033 0.967 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 -19.256 -10.139 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.035 4.035 3 N -0.331 5.331 4 C 0.323 3.677 5 O -0.343 6.343 6 C -0.288 4.288 7 C -0.112 4.112 8 N -0.121 5.121 9 N -0.087 5.087 10 C -0.008 4.008 11 C -0.105 4.105 12 C -0.150 4.150 13 C -0.072 4.072 14 N -0.191 5.191 15 C -0.088 4.088 16 C -0.042 4.042 17 C 0.023 3.977 18 C 0.029 3.971 19 N -0.333 5.333 20 C -0.301 4.301 21 H 0.074 0.926 22 C -0.244 4.244 23 N -0.596 5.596 24 Si 0.779 3.221 25 H -0.201 1.201 26 H -0.225 1.225 27 H -0.231 1.231 28 C -0.024 4.024 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.265 0.735 35 H 0.177 0.823 36 H 0.206 0.794 37 H 0.215 0.785 38 H 0.171 0.829 39 H 0.198 0.802 40 H 0.148 0.852 41 H 0.036 0.964 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.051 0.949 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.582 -18.469 -11.649 24.717 hybrid contribution 0.559 1.515 0.601 1.723 sum -11.022 -16.954 -11.049 23.043 Atomic orbital electron populations 1.22444 0.94950 1.04008 1.02554 1.22266 0.95108 0.81275 1.04812 1.47320 1.67493 1.14468 1.03779 1.17896 0.80679 0.85776 0.83379 1.91433 1.38325 1.18525 1.86034 1.20679 1.12767 1.01675 0.93633 1.25970 0.95483 0.95118 0.94626 1.77124 1.18835 1.10578 1.05585 1.45584 1.40183 1.18898 1.04061 1.18952 1.02906 0.99601 0.79342 1.21657 0.97264 0.97603 0.94018 1.22557 0.98468 0.99803 0.94136 1.23592 0.92398 0.89494 1.01761 1.67804 1.19116 1.28643 1.03574 1.22619 0.97728 0.96376 0.92091 1.23034 0.96651 0.95400 0.89115 1.22706 0.95955 0.92832 0.86199 1.22422 0.93764 0.85854 0.95096 1.45800 1.04691 1.22684 1.60140 1.18774 0.92315 0.95015 1.23972 0.92641 1.24996 0.95729 1.00518 1.03120 1.69984 0.97942 1.38611 1.53034 0.85450 0.77081 0.81214 0.78358 1.20126 1.22527 1.23098 1.23184 0.91630 0.91182 0.96364 0.87971 0.91649 0.93323 0.89238 0.87738 0.73480 0.82324 0.79441 0.78531 0.82903 0.80168 0.85197 0.96363 0.94358 0.95873 0.94860 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.76 71.98 0.63 -2.18 16 2 C 0.09 1.71 5.60 86.38 0.48 2.19 16 3 N -0.60 -19.38 2.73 -807.38 -2.20 -21.58 16 4 C 0.54 22.05 7.18 86.66 0.62 22.67 16 5 O -0.47 -25.31 10.40 -4.03 -0.04 -25.35 16 6 C -0.27 -9.32 5.92 -20.14 -0.12 -9.44 16 7 C 0.07 1.93 8.61 85.65 0.74 2.67 16 8 N -0.30 -8.21 11.85 -56.23 -0.67 -8.88 16 9 N -0.31 -9.13 3.77 -185.90 -0.70 -9.83 16 10 C 0.09 2.18 6.70 38.19 0.26 2.43 16 11 C -0.08 -1.45 9.77 22.58 0.22 -1.23 16 12 C -0.13 -1.61 10.10 22.34 0.23 -1.39 16 13 C 0.08 1.30 11.18 84.69 0.95 2.25 16 14 N -0.48 -11.45 10.35 -195.35 -2.02 -13.47 16 15 C 0.07 1.84 10.62 84.83 0.90 2.74 16 16 C 0.10 3.53 10.63 84.24 0.90 4.43 16 17 C 0.13 4.51 4.72 46.75 0.22 4.73 16 18 C 0.15 7.58 6.45 86.44 0.56 8.14 16 19 N -0.61 -32.49 2.11 -716.72 -1.51 -34.00 16 20 C -0.17 -10.40 8.77 84.03 0.74 -9.66 16 21 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 22 C -0.05 -3.19 4.98 84.86 0.42 -2.76 16 23 N -0.94 -61.15 11.37 21.65 0.25 -60.90 16 24 Si 0.95 50.61 29.55 68.60 2.03 52.64 16 25 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 27 H -0.30 -16.37 7.11 99.48 0.71 -15.66 16 28 C 0.10 4.18 8.43 86.49 0.73 4.91 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 31 H 0.05 0.93 6.27 -2.39 -0.01 0.92 16 32 H 0.09 1.68 4.79 -2.39 -0.01 1.66 16 33 H 0.10 1.52 7.97 -2.39 -0.02 1.51 16 34 H 0.25 4.52 3.21 -2.91 -0.01 4.51 16 35 H 0.16 2.61 7.77 -2.91 -0.02 2.59 16 36 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 37 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.15 4.10 6.74 -2.91 -0.02 4.08 16 39 H 0.18 6.30 7.03 -2.91 -0.02 6.28 16 40 H 0.13 3.29 7.97 -2.38 -0.02 3.27 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.04 2.20 6.32 -2.39 -0.02 2.18 16 43 H 0.23 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -86.75 362.91 4.63 -82.12 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.03 Total: 8.75 kcal Atomic # 6 Polarization: 22.04 SS G_CDS: 8.47 Total: 30.51 kcal Atomic # 7 Polarization: -141.80 SS G_CDS: -6.86 Total: -148.66 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.04 Total: -25.35 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.03 Total: 52.64 kcal Total: -86.75 4.63 -82.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950492803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 274.239 kcal (2) G-P(sol) polarization free energy of solvation -86.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds