Wall clock time and date at job start Wed Apr 1 2020 00:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.47149 * 2 1 4 4 C 1.34776 * 119.99738 * 254.74624 * 3 2 1 5 5 O 1.21575 * 120.00154 * 182.70071 * 4 3 2 6 6 C 1.47681 * 119.99935 * 2.69972 * 4 3 2 7 7 C 1.39697 * 120.07801 * 25.95694 * 6 4 3 8 8 C 1.37734 * 119.92131 * 179.69776 * 7 6 4 9 9 C 1.39047 * 120.07275 * 0.59840 * 8 7 6 10 10 N 1.39870 * 119.91774 * 179.69905 * 9 8 7 11 11 C 1.34805 * 126.84557 * 359.68839 * 10 9 8 12 12 N 1.30819 * 108.01764 * 179.83342 * 11 10 9 13 13 C 1.33290 * 109.84974 * 0.44403 * 12 11 10 14 14 N 1.30725 * 109.01450 * 359.72370 * 13 12 11 15 15 C 1.39044 * 120.16330 * 359.67584 * 9 8 7 16 16 C 1.37740 * 120.07254 * 0.02562 * 15 9 8 17 17 C 1.46492 * 120.00079 * 74.74210 * 3 2 1 18 18 C 1.53502 * 114.20679 * 233.62291 * 17 3 2 19 19 N 1.47070 * 87.98561 * 220.14927 * 18 17 3 20 20 C 1.36935 * 136.05705 * 207.08098 * 19 18 17 21 21 H 1.08007 * 119.99725 * 354.52891 * 20 19 18 22 22 C 1.38809 * 120.00041 * 174.52585 * 20 19 18 23 23 N 1.31620 * 119.99991 * 183.14190 * 22 20 19 24 24 Si 1.86803 * 120.00034 * 3.13947 * 22 20 19 25 25 H 1.48499 * 109.46984 * 174.85929 * 24 22 20 26 26 H 1.48500 * 109.47234 * 294.86595 * 24 22 20 27 27 H 1.48503 * 109.46647 * 54.86470 * 24 22 20 28 28 C 1.47070 * 87.88379 * 27.34274 * 19 18 17 29 29 H 1.09003 * 109.46639 * 300.00271 * 1 2 3 30 30 H 1.08997 * 109.47002 * 59.99922 * 1 2 3 31 31 H 1.08990 * 109.46842 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47359 * 239.99658 * 2 1 3 33 33 H 1.09001 * 109.47056 * 119.99575 * 2 1 3 34 34 H 1.08004 * 120.03965 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.96482 * 180.29774 * 8 7 6 36 36 H 1.07995 * 125.99467 * 359.97438 * 11 10 9 37 37 H 1.08004 * 125.49557 * 179.72706 * 13 12 11 38 38 H 1.07994 * 119.96673 * 179.97438 * 15 9 8 39 39 H 1.08004 * 120.03191 * 179.97438 * 16 15 9 40 40 H 1.09000 * 113.28980 * 6.68666 * 17 3 2 41 41 H 1.09002 * 113.47208 * 105.36810 * 18 17 3 42 42 H 1.09001 * 113.52089 * 334.93710 * 18 17 3 43 43 H 0.97000 * 119.99944 * 5.01053 * 23 22 20 44 44 H 1.08996 * 113.46673 * 87.43865 * 28 19 18 45 45 H 1.08994 * 113.46330 * 217.87854 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.5326 1.9142 -1.1261 5 8 2.9828 3.0434 -1.1137 6 6 2.5491 1.1264 -2.3751 7 6 1.6085 0.1133 -2.5764 8 6 1.6229 -0.6153 -3.7451 9 6 2.5800 -0.3517 -4.7187 10 7 2.5956 -1.0978 -5.9017 11 6 1.7585 -2.1000 -6.2365 12 7 2.1012 -2.5346 -7.4218 13 6 3.1513 -1.8468 -7.8699 14 7 3.4905 -0.9563 -6.9750 15 6 3.5213 0.6521 -4.5194 16 6 3.5089 1.3887 -3.3556 17 6 1.9478 2.1831 1.2239 18 6 1.2349 3.5317 1.0526 19 7 2.2603 4.1256 1.9237 20 6 2.3305 5.1941 2.7772 21 1 1.4993 5.8795 2.8539 22 6 3.4699 5.3964 3.5438 23 7 3.5136 6.3872 4.4091 24 14 4.9413 4.2623 3.3474 25 1 6.0650 4.7607 4.1804 26 1 4.5716 2.8918 3.7834 27 1 5.3568 4.2331 1.9220 28 6 3.1790 3.0707 1.4697 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.8681 -0.0954 -1.8183 35 1 0.8931 -1.3954 -3.9035 36 1 0.9458 -2.4764 -5.6330 37 1 3.6428 -2.0004 -8.8193 38 1 4.2635 0.8538 -5.2775 39 1 4.2407 2.1680 -3.2013 40 1 1.6227 1.6133 2.0943 41 1 0.2341 3.5517 1.4841 42 1 1.2608 3.9107 0.0309 43 1 2.7254 6.9310 4.5639 44 1 3.7180 3.3275 0.5578 45 1 3.8345 2.6979 2.2567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950556233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:48 Heat of formation + Delta-G solvation = 206.506003 kcal Electronic energy + Delta-G solvation = -29233.595431 eV Core-core repulsion = 25257.930610 eV Total energy + Delta-G solvation = -3975.664821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.81866 -41.05412 -39.29890 -37.30669 -36.19646 -34.45638 -32.40928 -32.14532 -31.39597 -30.53557 -30.14122 -27.66910 -25.36416 -25.12698 -24.05450 -23.46912 -23.16159 -21.95526 -21.61345 -20.25140 -19.27776 -18.90222 -17.60276 -17.15888 -16.67202 -16.34579 -15.92396 -15.62244 -15.48018 -15.37544 -15.07600 -14.54294 -14.49354 -14.13516 -13.70191 -13.47369 -13.24391 -13.19568 -13.03478 -12.92817 -12.60275 -12.47767 -12.08412 -11.74136 -11.69900 -11.46139 -11.34107 -11.13548 -10.96810 -10.66798 -10.61808 -10.40744 -10.29153 -9.61787 -9.51077 -9.24691 -9.02802 -8.84632 -8.79518 -8.33294 -7.02369 -6.25265 -3.16099 0.00167 0.79352 1.34605 1.65707 2.38519 2.68501 2.90105 3.41633 3.43348 3.54183 3.71449 3.71954 3.86421 4.21344 4.23649 4.34695 4.46743 4.62280 4.65372 4.79256 4.84307 4.92745 4.95283 5.02497 5.12384 5.23138 5.38962 5.42949 5.44965 5.50485 5.53881 5.58688 5.63940 5.80494 5.84119 5.87690 5.97674 6.04922 6.12506 6.29902 6.36652 6.37987 6.47473 6.60072 7.14734 7.21447 7.46110 7.46253 8.23210 8.28474 9.03495 9.55868 10.43140 11.26717 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.002477 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.479204 B =11300.892084 C =11958.027747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 N -0.592 5.592 4 C 0.549 3.451 5 O -0.506 6.506 6 C -0.125 4.125 7 C -0.093 4.093 8 C -0.143 4.143 9 C 0.163 3.837 10 N -0.330 5.330 11 C 0.263 3.737 12 N -0.537 5.537 13 C 0.207 3.793 14 N -0.312 5.312 15 C -0.118 4.118 16 C -0.039 4.039 17 C 0.098 3.902 18 C 0.119 3.881 19 N -0.621 5.621 20 C -0.295 4.295 21 H 0.082 0.918 22 C -0.026 4.026 23 N -0.936 5.936 24 Si 1.075 2.925 25 H -0.297 1.297 26 H -0.294 1.294 27 H -0.287 1.287 28 C 0.075 3.925 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.224 0.776 37 H 0.224 0.776 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.260 0.740 44 H 0.084 0.916 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.988 -22.992 -20.122 31.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.050 4.050 3 N -0.325 5.325 4 C 0.337 3.663 5 O -0.382 6.382 6 C -0.129 4.129 7 C -0.111 4.111 8 C -0.163 4.163 9 C 0.070 3.930 10 N -0.114 5.114 11 C -0.033 4.033 12 N -0.263 5.263 13 C -0.096 4.096 14 N -0.137 5.137 15 C -0.138 4.138 16 C -0.058 4.058 17 C -0.005 4.005 18 C -0.009 4.009 19 N -0.349 5.349 20 C -0.422 4.422 21 H 0.099 0.901 22 C -0.224 4.224 23 N -0.579 5.579 24 Si 0.909 3.091 25 H -0.224 1.224 26 H -0.223 1.223 27 H -0.214 1.214 28 C -0.051 4.051 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.188 0.812 35 H 0.155 0.845 36 H 0.240 0.760 37 H 0.240 0.760 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.133 0.867 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.732 -22.157 -19.706 29.887 hybrid contribution -1.847 0.188 -0.477 1.917 sum -5.580 -21.969 -20.184 30.351 Atomic orbital electron populations 1.22325 0.95602 1.02576 1.03453 1.22388 0.94708 0.83427 1.04496 1.47901 1.60764 1.13276 1.10552 1.18201 0.78595 0.86505 0.82983 1.90830 1.45031 1.18269 1.84052 1.20217 0.98394 0.98062 0.96212 1.22281 0.98975 0.93060 0.96790 1.20753 0.99180 1.03093 0.93310 1.17772 0.97911 0.93723 0.83602 1.47742 1.23515 1.26327 1.13806 1.26265 0.95915 0.87570 0.93512 1.70647 1.16028 1.29714 1.09920 1.26227 0.93068 0.90429 0.99846 1.78179 1.14173 1.24668 0.96645 1.20901 0.99047 0.95087 0.98743 1.21243 0.96774 0.97124 0.90696 1.23675 1.00926 0.90717 0.85204 1.22657 0.93413 0.89460 0.95391 1.45770 1.09146 1.32261 1.47719 1.20131 1.04756 1.02497 1.14780 0.90073 1.25693 1.00612 1.00628 0.95449 1.70925 1.31447 1.19660 1.35886 0.83646 0.75999 0.73918 0.75581 1.22450 1.22278 1.21445 1.23574 0.93960 0.88359 0.99198 0.91001 0.91720 0.91081 0.88005 0.90316 0.81196 0.84471 0.75954 0.75984 0.83805 0.83508 0.86654 0.94101 0.93306 0.93034 0.89845 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.09 37.16 0.34 -0.87 16 2 C 0.07 0.61 5.59 -4.04 -0.02 0.58 16 3 N -0.59 -7.99 2.79 -166.89 -0.47 -8.46 16 4 C 0.55 8.20 6.97 -12.40 -0.09 8.11 16 5 O -0.51 -9.92 12.18 5.30 0.06 -9.86 16 6 C -0.12 -1.39 5.55 -104.95 -0.58 -1.97 16 7 C -0.09 -0.71 7.44 -39.22 -0.29 -1.00 16 8 C -0.14 -0.90 9.45 -39.47 -0.37 -1.27 16 9 C 0.16 1.40 6.70 -83.59 -0.56 0.84 16 10 N -0.33 -2.89 3.81 -11.77 -0.04 -2.94 16 11 C 0.26 1.80 11.97 -90.33 -1.08 0.72 16 12 N -0.54 -4.62 11.19 -15.73 -0.18 -4.80 16 13 C 0.21 1.66 13.03 -91.76 -1.20 0.47 16 14 N -0.31 -3.09 12.03 29.30 0.35 -2.73 16 15 C -0.12 -1.13 9.66 -39.46 -0.38 -1.51 16 16 C -0.04 -0.42 9.58 -39.22 -0.38 -0.79 16 17 C 0.10 1.72 4.63 -67.67 -0.31 1.40 16 18 C 0.12 2.47 8.11 -8.50 -0.07 2.40 16 19 N -0.62 -16.14 3.69 -184.59 -0.68 -16.82 16 20 C -0.30 -8.87 11.09 -15.06 -0.17 -9.04 16 21 H 0.08 2.55 8.05 -52.48 -0.42 2.13 16 22 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 23 N -0.94 -30.37 13.70 55.49 0.76 -29.61 16 24 Si 1.07 28.21 25.08 -169.99 -4.26 23.94 16 25 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 26 H -0.29 -7.15 6.37 56.52 0.36 -6.79 16 27 H -0.29 -7.34 6.67 56.52 0.38 -6.97 16 28 C 0.07 1.69 5.29 -8.36 -0.04 1.65 16 29 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.06 0.43 6.90 -51.93 -0.36 0.07 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.68 4.11 -51.93 -0.21 0.47 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.17 1.02 2.52 -52.48 -0.13 0.88 16 35 H 0.14 0.37 6.78 -52.49 -0.36 0.01 16 36 H 0.22 0.48 7.08 -52.49 -0.37 0.11 16 37 H 0.22 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.14 1.35 7.72 -52.49 -0.41 0.95 16 39 H 0.15 1.64 7.86 -52.48 -0.41 1.22 16 40 H 0.12 1.81 8.08 -51.93 -0.42 1.39 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.07 6.51 -51.93 -0.34 0.73 16 43 H 0.26 8.29 8.73 -40.82 -0.36 7.94 16 44 H 0.08 2.02 5.14 -51.93 -0.27 1.76 16 45 H 0.05 1.06 3.97 -51.93 -0.21 0.85 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -39.03 358.31 -9.59 -48.62 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.23 Total: -1.56 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -5.30 Total: -1.18 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.26 Total: -65.36 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.06 Total: -9.86 kcal Atomic # 14 Polarization: 28.21 SS G_CDS: -4.26 Total: 23.94 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.03 -9.59 -48.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950556233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.126 kcal (2) G-P(sol) polarization free energy of solvation -39.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 216.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds