Wall clock time and date at job start Wed Apr 1 2020 00:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.47149 * 2 1 4 4 C 1.34776 * 119.99738 * 254.74624 * 3 2 1 5 5 O 1.21575 * 120.00154 * 182.70071 * 4 3 2 6 6 C 1.47681 * 119.99935 * 2.69972 * 4 3 2 7 7 C 1.39697 * 120.07801 * 25.95694 * 6 4 3 8 8 C 1.37734 * 119.92131 * 179.69776 * 7 6 4 9 9 C 1.39047 * 120.07275 * 0.59840 * 8 7 6 10 10 N 1.39870 * 119.91774 * 179.69905 * 9 8 7 11 11 C 1.34805 * 126.84557 * 359.68839 * 10 9 8 12 12 N 1.30819 * 108.01764 * 179.83342 * 11 10 9 13 13 C 1.33290 * 109.84974 * 0.44403 * 12 11 10 14 14 N 1.30725 * 109.01450 * 359.72370 * 13 12 11 15 15 C 1.39044 * 120.16330 * 359.67584 * 9 8 7 16 16 C 1.37740 * 120.07254 * 0.02562 * 15 9 8 17 17 C 1.46492 * 120.00079 * 74.74210 * 3 2 1 18 18 C 1.53502 * 114.20679 * 233.62291 * 17 3 2 19 19 N 1.47070 * 87.98561 * 220.14927 * 18 17 3 20 20 C 1.36935 * 136.05705 * 207.08098 * 19 18 17 21 21 H 1.08007 * 119.99725 * 354.52891 * 20 19 18 22 22 C 1.38809 * 120.00041 * 174.52585 * 20 19 18 23 23 N 1.31620 * 119.99991 * 183.14190 * 22 20 19 24 24 Si 1.86803 * 120.00034 * 3.13947 * 22 20 19 25 25 H 1.48499 * 109.46984 * 174.85929 * 24 22 20 26 26 H 1.48500 * 109.47234 * 294.86595 * 24 22 20 27 27 H 1.48503 * 109.46647 * 54.86470 * 24 22 20 28 28 C 1.47070 * 87.88379 * 27.34274 * 19 18 17 29 29 H 1.09003 * 109.46639 * 300.00271 * 1 2 3 30 30 H 1.08997 * 109.47002 * 59.99922 * 1 2 3 31 31 H 1.08990 * 109.46842 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47359 * 239.99658 * 2 1 3 33 33 H 1.09001 * 109.47056 * 119.99575 * 2 1 3 34 34 H 1.08004 * 120.03965 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.96482 * 180.29774 * 8 7 6 36 36 H 1.07995 * 125.99467 * 359.97438 * 11 10 9 37 37 H 1.08004 * 125.49557 * 179.72706 * 13 12 11 38 38 H 1.07994 * 119.96673 * 179.97438 * 15 9 8 39 39 H 1.08004 * 120.03191 * 179.97438 * 16 15 9 40 40 H 1.09000 * 113.28980 * 6.68666 * 17 3 2 41 41 H 1.09002 * 113.47208 * 105.36810 * 18 17 3 42 42 H 1.09001 * 113.52089 * 334.93710 * 18 17 3 43 43 H 0.97000 * 119.99944 * 5.01053 * 23 22 20 44 44 H 1.08996 * 113.46673 * 87.43865 * 28 19 18 45 45 H 1.08994 * 113.46330 * 217.87854 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.5326 1.9142 -1.1261 5 8 2.9828 3.0434 -1.1137 6 6 2.5491 1.1264 -2.3751 7 6 1.6085 0.1133 -2.5764 8 6 1.6229 -0.6153 -3.7451 9 6 2.5800 -0.3517 -4.7187 10 7 2.5956 -1.0978 -5.9017 11 6 1.7585 -2.1000 -6.2365 12 7 2.1012 -2.5346 -7.4218 13 6 3.1513 -1.8468 -7.8699 14 7 3.4905 -0.9563 -6.9750 15 6 3.5213 0.6521 -4.5194 16 6 3.5089 1.3887 -3.3556 17 6 1.9478 2.1831 1.2239 18 6 1.2349 3.5317 1.0526 19 7 2.2603 4.1256 1.9237 20 6 2.3305 5.1941 2.7772 21 1 1.4993 5.8795 2.8539 22 6 3.4699 5.3964 3.5438 23 7 3.5136 6.3872 4.4091 24 14 4.9413 4.2623 3.3474 25 1 6.0650 4.7607 4.1804 26 1 4.5716 2.8918 3.7834 27 1 5.3568 4.2331 1.9220 28 6 3.1790 3.0707 1.4697 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.8681 -0.0954 -1.8183 35 1 0.8931 -1.3954 -3.9035 36 1 0.9458 -2.4764 -5.6330 37 1 3.6428 -2.0004 -8.8193 38 1 4.2635 0.8538 -5.2775 39 1 4.2407 2.1680 -3.2013 40 1 1.6227 1.6133 2.0943 41 1 0.2341 3.5517 1.4841 42 1 1.2608 3.9107 0.0309 43 1 2.7254 6.9310 4.5639 44 1 3.7180 3.3275 0.5578 45 1 3.8345 2.6979 2.2567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950556233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:47 Heat of formation + Delta-G solvation = 180.534355 kcal Electronic energy + Delta-G solvation = -29234.721646 eV Core-core repulsion = 25257.930610 eV Total energy + Delta-G solvation = -3976.791036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.38129 -42.14468 -40.32016 -38.73152 -37.19192 -35.23685 -34.51521 -32.81329 -32.20278 -31.33095 -30.97752 -29.41206 -27.06163 -26.13958 -24.86754 -24.38741 -24.17543 -22.69210 -22.37205 -21.75852 -20.45660 -19.66262 -19.51406 -18.35704 -17.61388 -17.11683 -16.94295 -16.78712 -16.56405 -16.35545 -15.99534 -15.67205 -15.31584 -15.18105 -15.11748 -14.81558 -14.41141 -14.19808 -14.06110 -13.77885 -13.64087 -13.39215 -13.19444 -13.12567 -13.06467 -12.53487 -12.49082 -12.30368 -12.11211 -11.98901 -11.69625 -11.42950 -11.22110 -11.12502 -11.06231 -11.00842 -10.67095 -10.13824 -9.68732 -9.45273 -9.15628 -8.67932 -5.50490 -0.67795 0.15407 0.71101 1.10807 1.31110 1.44905 1.64311 1.70305 1.81526 1.88300 2.48414 2.62543 3.03551 3.19932 3.26805 3.35969 3.40264 3.54285 3.66013 3.86094 3.90237 4.01417 4.11633 4.15504 4.29214 4.35477 4.39895 4.44145 4.55714 4.59982 4.69131 4.80678 4.81229 4.87857 4.92718 4.93677 4.99075 5.11449 5.14957 5.20631 5.24669 5.31606 5.46708 5.51007 5.71584 5.90487 5.91958 6.38983 6.66547 6.91649 7.11911 7.28118 8.24151 8.86695 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.002477 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.479204 B =11300.892084 C =11958.027747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 N -0.588 5.588 4 C 0.545 3.455 5 O -0.566 6.566 6 C -0.143 4.143 7 C -0.076 4.076 8 C -0.121 4.121 9 C 0.165 3.835 10 N -0.343 5.343 11 C 0.274 3.726 12 N -0.562 5.562 13 C 0.208 3.792 14 N -0.352 5.352 15 C -0.128 4.128 16 C -0.051 4.051 17 C 0.137 3.863 18 C 0.117 3.883 19 N -0.653 5.653 20 C -0.287 4.287 21 H 0.051 0.949 22 C -0.083 4.083 23 N -0.969 5.969 24 Si 1.115 2.885 25 H -0.301 1.301 26 H -0.259 1.259 27 H -0.286 1.286 28 C 0.063 3.937 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.195 0.805 35 H 0.189 0.811 36 H 0.272 0.728 37 H 0.249 0.751 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.145 0.855 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.247 0.753 44 H 0.068 0.932 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 -28.283 -21.511 36.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.056 4.056 3 N -0.319 5.319 4 C 0.335 3.665 5 O -0.446 6.446 6 C -0.147 4.147 7 C -0.094 4.094 8 C -0.142 4.142 9 C 0.071 3.929 10 N -0.127 5.127 11 C -0.020 4.020 12 N -0.288 5.288 13 C -0.094 4.094 14 N -0.178 5.178 15 C -0.148 4.148 16 C -0.071 4.071 17 C 0.032 3.968 18 C -0.010 4.010 19 N -0.381 5.381 20 C -0.414 4.414 21 H 0.069 0.931 22 C -0.275 4.275 23 N -0.614 5.614 24 Si 0.942 3.058 25 H -0.229 1.229 26 H -0.185 1.185 27 H -0.213 1.213 28 C -0.062 4.062 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.212 0.788 35 H 0.206 0.794 36 H 0.288 0.712 37 H 0.265 0.735 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.163 0.837 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.804 -27.538 -21.138 35.197 hybrid contribution -1.330 1.778 -0.269 2.236 sum -7.133 -25.759 -21.407 34.245 Atomic orbital electron populations 1.22342 0.93753 1.04833 1.02877 1.22837 0.96136 0.80150 1.06513 1.47913 1.60422 1.14965 1.08629 1.18841 0.77312 0.86013 0.84296 1.90799 1.47631 1.21059 1.85147 1.19945 1.00432 0.99719 0.94602 1.22479 0.97807 0.91367 0.97771 1.21218 0.98602 1.03028 0.91310 1.17986 0.97758 0.93001 0.84117 1.47795 1.24080 1.27129 1.13675 1.27262 0.95653 0.85917 0.93161 1.70695 1.16563 1.30494 1.11065 1.26830 0.92742 0.89459 1.00352 1.78157 1.15759 1.26134 0.97706 1.20795 0.99897 0.95995 0.98126 1.21077 0.97082 0.97358 0.91551 1.23037 0.96014 0.90017 0.87704 1.22756 0.93370 0.91210 0.93650 1.45920 1.12241 1.31918 1.48037 1.20022 1.03513 1.03023 1.14882 0.93132 1.26966 1.03466 1.01610 0.95438 1.71012 1.31089 1.21225 1.38106 0.83158 0.72985 0.74109 0.75525 1.22886 1.18517 1.21267 1.23690 0.95608 0.88721 0.98147 0.92459 0.91550 0.87348 0.85751 0.88711 0.78831 0.79353 0.71249 0.73504 0.84681 0.85583 0.83724 0.92741 0.94675 0.94393 0.91455 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 9.09 71.98 0.65 -0.76 16 2 C 0.06 0.76 5.59 86.38 0.48 1.24 16 3 N -0.59 -14.43 2.79 -800.18 -2.24 -16.67 16 4 C 0.54 15.94 6.97 86.74 0.60 16.55 16 5 O -0.57 -23.13 12.18 -3.95 -0.05 -23.18 16 6 C -0.14 -2.97 5.55 -20.08 -0.11 -3.08 16 7 C -0.08 -0.82 7.44 22.50 0.17 -0.66 16 8 C -0.12 -0.87 9.45 22.34 0.21 -0.66 16 9 C 0.16 2.32 6.70 38.25 0.26 2.58 16 10 N -0.34 -4.98 3.81 -191.16 -0.73 -5.71 16 11 C 0.27 2.54 11.97 180.25 2.16 4.70 16 12 N -0.56 -7.93 11.19 -203.69 -2.28 -10.21 16 13 C 0.21 2.95 13.03 180.75 2.35 5.30 16 14 N -0.35 -6.49 12.03 -61.21 -0.74 -7.23 16 15 C -0.13 -2.40 9.66 22.35 0.22 -2.19 16 16 C -0.05 -1.12 9.58 22.50 0.22 -0.90 16 17 C 0.14 4.52 4.63 45.55 0.21 4.73 16 18 C 0.12 4.85 8.11 83.18 0.67 5.53 16 19 N -0.65 -34.45 3.69 -737.92 -2.72 -37.17 16 20 C -0.29 -17.85 11.09 84.03 0.93 -16.92 16 21 H 0.05 3.36 8.05 -2.91 -0.02 3.34 16 22 C -0.08 -5.27 5.50 84.86 0.47 -4.80 16 23 N -0.97 -65.22 13.70 21.65 0.30 -64.92 16 24 Si 1.11 57.98 25.08 68.60 1.72 59.70 16 25 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 26 H -0.26 -11.87 6.37 99.48 0.63 -11.23 16 27 H -0.29 -14.62 6.67 99.48 0.66 -13.96 16 28 C 0.06 2.86 5.29 83.27 0.44 3.30 16 29 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 30 H 0.07 0.53 6.90 -2.39 -0.02 0.51 16 31 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.13 0.96 4.11 -2.39 -0.01 0.95 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.20 1.16 2.52 -2.91 -0.01 1.15 16 35 H 0.19 -0.56 6.78 -2.91 -0.02 -0.58 16 36 H 0.27 -0.70 7.08 -2.91 -0.02 -0.72 16 37 H 0.25 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.14 2.69 7.72 -2.91 -0.02 2.66 16 39 H 0.13 3.17 7.86 -2.91 -0.02 3.14 16 40 H 0.15 3.99 8.08 -2.39 -0.02 3.97 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.04 1.58 6.51 -2.39 -0.02 1.57 16 43 H 0.25 16.61 8.73 -92.71 -0.81 15.80 16 44 H 0.07 3.35 5.14 -2.39 -0.01 3.34 16 45 H 0.04 1.95 3.97 -2.39 -0.01 1.94 16 Total: -1.00 -93.26 358.31 4.10 -89.16 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 0.89 Total: 2.26 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 9.93 Total: 13.96 kcal Atomic # 7 Polarization: -133.50 SS G_CDS: -8.41 Total: -141.90 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 57.98 SS G_CDS: 1.72 Total: 59.70 kcal Total: -93.26 4.10 -89.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950556233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 269.696 kcal (2) G-P(sol) polarization free energy of solvation -93.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds