Wall clock time and date at job start Wed Apr 1 2020 00:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47057 * 2 1 4 4 C 1.34772 * 119.99916 * 274.77565 * 3 2 1 5 5 O 1.21562 * 119.99654 * 183.07146 * 4 3 2 6 6 C 1.47831 * 120.00282 * 3.06745 * 4 3 2 7 7 N 1.34571 * 126.02153 * 5.55021 * 6 4 3 8 8 C 1.30878 * 107.28749 * 179.97438 * 7 6 4 9 9 N 1.34882 * 107.59014 * 359.97438 * 8 7 6 10 10 C 1.40144 * 125.76695 * 179.97438 * 9 8 7 11 11 C 1.38845 * 120.07138 * 359.73165 * 10 9 8 12 12 C 1.38113 * 119.93491 * 179.72149 * 11 10 9 13 13 C 1.38288 * 120.06308 * 0.55247 * 12 11 10 14 14 C 1.38279 * 120.13935 * 359.72309 * 13 12 11 15 15 C 1.38116 * 120.06701 * 359.97438 * 14 13 12 16 16 N 1.28853 * 108.45817 * 359.73722 * 9 8 7 17 17 C 1.46493 * 119.99855 * 94.77950 * 3 2 1 18 18 C 1.53498 * 114.20574 * 231.72115 * 17 3 2 19 19 N 1.47075 * 87.98586 * 220.14524 * 18 17 3 20 20 C 1.36934 * 136.05878 * 207.08304 * 19 18 17 21 21 H 1.07997 * 119.99717 * 354.70862 * 20 19 18 22 22 C 1.38804 * 120.00047 * 174.70734 * 20 19 18 23 23 N 1.31617 * 120.00088 * 183.81119 * 22 20 19 24 24 Si 1.86800 * 119.99998 * 3.80706 * 22 20 19 25 25 H 1.48502 * 109.47324 * 174.24985 * 24 22 20 26 26 H 1.48496 * 109.47334 * 294.25353 * 24 22 20 27 27 H 1.48506 * 109.47042 * 54.25556 * 24 22 20 28 28 C 1.47073 * 87.88110 * 27.34008 * 19 18 17 29 29 H 1.09004 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47056 * 299.99498 * 1 2 3 31 31 H 1.08997 * 109.47111 * 59.99571 * 1 2 3 32 32 H 1.09001 * 109.47056 * 240.00502 * 2 1 3 33 33 H 1.08997 * 109.47111 * 120.00429 * 2 1 3 34 34 H 1.08002 * 126.20272 * 180.02562 * 8 7 6 35 35 H 1.08004 * 120.03260 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.96950 * 180.29661 * 12 11 10 37 37 H 1.08004 * 119.93312 * 179.74586 * 13 12 11 38 38 H 1.07994 * 119.96817 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.03618 * 180.02562 * 15 14 13 40 40 H 1.09003 * 113.28547 * 4.78815 * 17 3 2 41 41 H 1.09005 * 113.46947 * 105.36874 * 18 17 3 42 42 H 1.08999 * 113.46873 * 334.92617 * 18 17 3 43 43 H 0.96998 * 119.99917 * 5.00753 * 23 22 20 44 44 H 1.08997 * 113.46536 * 87.43699 * 28 19 18 45 45 H 1.08994 * 113.46298 * 217.87222 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1513 2.0489 -1.1631 5 8 2.6090 3.1751 -1.1685 6 6 1.7407 1.4119 -2.4323 7 7 1.1268 0.2209 -2.5577 8 6 0.9342 0.0153 -3.8358 9 7 1.4292 1.0803 -4.4992 10 6 1.4224 1.2547 -5.8897 11 6 0.8765 0.2773 -6.7108 12 6 0.8661 0.4547 -8.0805 13 6 1.4090 1.5993 -8.6349 14 6 1.9586 2.5721 -7.8201 15 6 1.9663 2.4032 -6.4493 16 7 1.9047 1.9124 -3.6379 17 6 2.3621 2.0366 1.2643 18 6 1.6935 3.4034 1.4669 19 7 2.9622 3.8814 2.0370 20 6 3.3389 4.8429 2.9362 21 1 2.6028 5.5216 3.3410 22 6 4.6667 4.9453 3.3275 23 7 5.0163 5.8194 4.2473 24 14 5.9576 3.8423 2.5486 25 1 7.3046 4.2397 3.0312 26 1 5.6939 2.4301 2.9242 27 1 5.9005 3.9806 1.0711 28 6 3.6489 2.8765 1.2113 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.4635 -0.8499 -4.2789 35 1 0.4566 -0.6191 -6.2787 36 1 0.4373 -0.3031 -8.7194 37 1 1.4035 1.7340 -9.7065 38 1 2.3815 3.4651 -8.2560 39 1 2.3953 3.1635 -5.8135 40 1 2.2929 1.3730 2.1263 41 1 0.8746 3.3837 2.1861 42 1 1.4237 3.8972 0.5334 43 1 4.3375 6.3409 4.7036 44 1 3.8945 3.2315 0.2104 45 1 4.4958 2.4081 1.7126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950582242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:29 Heat of formation + Delta-G solvation = 193.051629 kcal Electronic energy + Delta-G solvation = -29336.701061 eV Core-core repulsion = 25360.452814 eV Total energy + Delta-G solvation = -3976.248246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.95214 -40.29659 -39.67622 -37.27245 -35.74481 -34.68079 -32.48725 -32.23611 -31.43883 -30.13799 -30.03822 -27.69691 -25.47595 -25.12589 -24.43094 -23.30153 -22.93810 -22.15040 -21.62842 -20.04278 -19.45004 -18.52694 -17.43332 -17.03894 -16.86410 -16.77074 -16.15725 -15.55520 -15.36331 -15.04540 -14.97505 -14.69796 -14.14940 -13.92044 -13.88973 -13.63337 -13.34807 -13.02098 -12.94887 -12.48904 -12.36068 -12.23928 -11.89453 -11.65635 -11.63920 -11.51293 -11.24699 -11.08098 -10.82140 -10.60972 -10.41513 -10.23482 -10.13954 -9.67318 -9.65677 -9.16594 -8.97918 -8.94514 -8.75807 -8.18452 -6.94706 -6.18117 -3.08389 0.17304 0.69536 1.51139 1.77013 1.90325 2.92999 3.14760 3.37235 3.50585 3.61798 3.76120 3.78922 3.93470 4.17172 4.33751 4.41075 4.54610 4.71859 4.72617 4.84822 5.00385 5.02059 5.15576 5.21153 5.34594 5.51145 5.53889 5.55725 5.59262 5.62667 5.69362 5.75693 5.86457 5.88204 5.97711 6.00954 6.12046 6.16575 6.37103 6.42540 6.47394 6.48939 6.53846 6.69676 7.23184 7.31234 7.51033 7.74303 8.32788 8.35781 9.11021 9.63468 10.51368 11.34072 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.002730 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.461189 B =10254.442134 C =11282.247269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.581 5.581 4 C 0.604 3.396 5 O -0.493 6.493 6 C 0.163 3.837 7 N -0.467 5.467 8 C 0.189 3.811 9 N -0.254 5.254 10 C 0.130 3.870 11 C -0.123 4.123 12 C -0.098 4.098 13 C -0.115 4.115 14 C -0.098 4.098 15 C -0.102 4.102 16 N -0.252 5.252 17 C 0.101 3.899 18 C 0.117 3.883 19 N -0.621 5.621 20 C -0.293 4.293 21 H 0.082 0.918 22 C -0.026 4.026 23 N -0.938 5.938 24 Si 1.073 2.927 25 H -0.297 1.297 26 H -0.293 1.293 27 H -0.287 1.287 28 C 0.076 3.924 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.259 0.741 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 -19.108 -27.438 35.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.314 5.314 4 C 0.387 3.613 5 O -0.364 6.364 6 C -0.116 4.116 7 N -0.191 5.191 8 C -0.105 4.105 9 N -0.042 5.042 10 C 0.039 3.961 11 C -0.143 4.143 12 C -0.117 4.117 13 C -0.134 4.134 14 C -0.117 4.117 15 C -0.121 4.121 16 N -0.087 5.087 17 C -0.003 4.003 18 C -0.011 4.011 19 N -0.349 5.349 20 C -0.419 4.419 21 H 0.100 0.900 22 C -0.224 4.224 23 N -0.581 5.581 24 Si 0.907 3.093 25 H -0.225 1.225 26 H -0.222 1.222 27 H -0.214 1.214 28 C -0.050 4.050 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.243 0.757 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.138 0.862 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.935 -18.175 -27.006 34.035 hybrid contribution -1.977 0.060 -0.284 1.999 sum -11.912 -18.115 -27.290 34.854 Atomic orbital electron populations 1.22049 0.95724 1.01620 1.01854 1.21834 0.94995 0.81610 1.03438 1.47752 1.63884 1.14372 1.05393 1.16344 0.79390 0.84886 0.80718 1.90875 1.42678 1.17547 1.85272 1.24088 1.02689 0.91423 0.93449 1.71668 1.17248 1.15294 1.14940 1.26714 1.00654 0.94939 0.88177 1.44599 1.39848 1.13899 1.05904 1.17676 1.03259 0.97672 0.77508 1.20847 1.01292 0.98353 0.93821 1.21022 0.98967 0.98085 0.93605 1.21379 0.97580 0.93812 1.00614 1.21182 0.98472 0.99632 0.92372 1.21156 0.98613 0.96383 0.95976 1.74430 1.17868 1.17376 0.99064 1.23729 0.99236 0.93593 0.83724 1.22682 0.91016 0.90523 0.96883 1.45785 1.02311 1.41101 1.45734 1.20134 0.96094 1.09490 1.16207 0.90043 1.25672 0.96642 1.00967 0.99112 1.70924 1.35445 1.25706 1.26034 0.83677 0.75682 0.74316 0.75664 1.22486 1.22176 1.21406 1.23507 0.94333 0.89740 0.97405 0.92077 0.93126 0.92176 0.88528 0.90752 0.75734 0.84687 0.84526 0.85012 0.84544 0.83774 0.86202 0.93914 0.93160 0.93088 0.90321 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.63 37.16 0.36 -1.34 16 2 C 0.10 1.28 5.72 -4.04 -0.02 1.26 16 3 N -0.58 -9.65 2.77 -166.84 -0.46 -10.11 16 4 C 0.60 11.17 7.13 -12.34 -0.09 11.08 16 5 O -0.49 -11.14 12.62 5.31 0.07 -11.07 16 6 C 0.16 2.53 7.43 -156.30 -1.16 1.37 16 7 N -0.47 -5.53 6.25 -12.29 -0.08 -5.61 16 8 C 0.19 1.66 11.93 -90.21 -1.08 0.58 16 9 N -0.25 -2.79 3.52 -11.77 -0.04 -2.83 16 10 C 0.13 1.12 6.67 -83.60 -0.56 0.56 16 11 C -0.12 -0.64 9.45 -39.40 -0.37 -1.02 16 12 C -0.10 -0.40 10.04 -39.61 -0.40 -0.80 16 13 C -0.12 -0.52 10.04 -39.55 -0.40 -0.92 16 14 C -0.10 -0.60 10.04 -39.61 -0.40 -0.99 16 15 C -0.10 -0.89 9.62 -39.40 -0.38 -1.27 16 16 N -0.25 -3.81 11.33 32.08 0.36 -3.44 16 17 C 0.10 1.96 4.80 -67.68 -0.32 1.63 16 18 C 0.12 2.63 8.10 -8.50 -0.07 2.56 16 19 N -0.62 -16.94 3.69 -184.59 -0.68 -17.62 16 20 C -0.29 -9.08 11.09 -15.06 -0.17 -9.24 16 21 H 0.08 2.63 8.05 -52.49 -0.42 2.21 16 22 C -0.03 -0.82 5.50 -17.43 -0.10 -0.92 16 23 N -0.94 -31.08 13.70 55.49 0.76 -30.32 16 24 Si 1.07 29.10 25.10 -169.99 -4.27 24.84 16 25 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 26 H -0.29 -7.37 6.35 56.52 0.36 -7.01 16 27 H -0.29 -7.64 6.66 56.52 0.38 -7.26 16 28 C 0.08 1.84 5.29 -8.36 -0.04 1.79 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.74 6.54 -51.93 -0.34 0.40 16 32 H 0.10 1.15 5.67 -51.93 -0.29 0.85 16 33 H 0.07 0.81 7.90 -51.93 -0.41 0.39 16 34 H 0.23 0.73 7.01 -52.49 -0.37 0.36 16 35 H 0.14 0.32 6.71 -52.48 -0.35 -0.03 16 36 H 0.14 0.20 8.06 -52.49 -0.42 -0.22 16 37 H 0.13 0.29 8.06 -52.48 -0.42 -0.13 16 38 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.14 1.49 7.68 -52.49 -0.40 1.09 16 40 H 0.12 2.08 7.94 -51.93 -0.41 1.66 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 1.20 6.36 -51.93 -0.33 0.87 16 43 H 0.26 8.45 8.73 -40.82 -0.36 8.10 16 44 H 0.08 2.05 5.26 -51.93 -0.27 1.77 16 45 H 0.05 1.17 4.01 -51.93 -0.21 0.96 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -39.46 362.02 -9.64 -49.10 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.57 Total: -2.73 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -5.19 Total: 4.34 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -0.14 Total: -69.93 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 29.10 SS G_CDS: -4.27 Total: 24.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.46 -9.64 -49.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950582242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.150 kcal (2) G-P(sol) polarization free energy of solvation -39.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds