Wall clock time and date at job start Wed Apr 1 2020 00:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47417 * 2 1 4 4 C 1.34780 * 120.00092 * 275.26084 * 3 2 1 5 5 O 1.21549 * 120.00171 * 183.53905 * 4 3 2 6 6 C 1.47933 * 119.99797 * 3.53062 * 4 3 2 7 7 C 1.39509 * 119.59702 * 186.15223 * 6 4 3 8 8 C 1.38227 * 119.18967 * 180.02562 * 7 6 4 9 9 C 1.39790 * 118.38633 * 0.02562 * 8 7 6 10 10 C 1.48263 * 120.43243 * 180.02562 * 9 8 7 11 11 C 1.40952 * 126.25311 * 359.68351 * 10 9 8 12 12 N 1.30632 * 108.07063 * 179.81510 * 11 10 9 13 13 N 1.39997 * 108.56799 * 0.45150 * 12 11 10 14 14 H 0.97004 * 125.87159 * 179.73764 * 13 12 11 15 15 C 1.34713 * 108.25987 * 359.70577 * 13 12 11 16 16 C 1.39740 * 119.12487 * 359.97438 * 9 8 7 17 17 N 1.31306 * 120.72988 * 359.72328 * 16 9 8 18 18 C 1.46504 * 120.00193 * 95.24934 * 3 2 1 19 19 C 1.53494 * 114.20815 * 231.72475 * 18 3 2 20 20 N 1.47064 * 87.98582 * 220.14818 * 19 18 3 21 21 C 1.36936 * 136.05657 * 207.08749 * 20 19 18 22 22 H 1.07999 * 120.00283 * 354.70923 * 21 20 19 23 23 C 1.38816 * 119.99685 * 174.71544 * 21 20 19 24 24 N 1.31625 * 119.99441 * 183.82564 * 23 21 20 25 25 Si 1.86795 * 120.00100 * 3.82336 * 23 21 20 26 26 H 1.48502 * 109.46750 * 174.23206 * 25 23 21 27 27 H 1.48500 * 109.47336 * 294.22779 * 25 23 21 28 28 H 1.48490 * 109.47055 * 54.23116 * 25 23 21 29 29 C 1.47065 * 87.88237 * 27.34614 * 20 19 18 30 30 H 1.09000 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47181 * 300.00270 * 1 2 3 32 32 H 1.09002 * 109.46943 * 59.99755 * 1 2 3 33 33 H 1.08997 * 109.47442 * 239.99891 * 2 1 3 34 34 H 1.09005 * 109.47001 * 119.99711 * 2 1 3 35 35 H 1.08002 * 120.40337 * 359.97438 * 7 6 4 36 36 H 1.07996 * 120.80114 * 179.97438 * 8 7 6 37 37 H 1.07999 * 125.96166 * 359.97438 * 11 10 9 38 38 H 1.08002 * 126.20039 * 180.02562 * 15 13 12 39 39 H 1.08000 * 119.63439 * 179.97438 * 16 9 8 40 40 H 1.08996 * 113.27812 * 4.79967 * 18 3 2 41 41 H 1.09007 * 113.46295 * 105.37135 * 19 18 3 42 42 H 1.08992 * 113.47188 * 334.93752 * 19 18 3 43 43 H 0.96995 * 120.00018 * 5.00717 * 24 23 21 44 44 H 1.08999 * 113.46826 * 87.44063 * 29 20 19 45 45 H 1.08997 * 113.46678 * 217.87270 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1421 2.0522 -1.1623 5 8 2.6077 3.1750 -1.1693 6 6 1.7115 1.4222 -2.4296 7 6 1.9607 2.0691 -3.6402 8 6 1.5542 1.4730 -4.8193 9 6 0.9047 0.2371 -4.7497 10 6 0.4500 -0.4429 -5.9861 11 6 0.5965 0.0368 -7.3034 12 7 0.0752 -0.8435 -8.1156 13 7 -0.4299 -1.9060 -7.3568 14 1 -0.8739 -2.6941 -7.7071 15 6 -0.1929 -1.6461 -6.0564 16 6 0.6907 -0.3493 -3.4994 17 7 1.0967 0.2450 -2.4012 18 6 2.3720 2.0331 1.2634 19 6 1.7051 3.3993 1.4750 20 7 2.9782 3.8758 2.0363 21 6 3.3618 4.8349 2.9353 22 1 2.6290 5.5125 3.3478 23 6 4.6928 4.9363 3.3162 24 7 5.0495 5.8077 4.2359 25 14 5.9776 3.8360 2.5237 26 1 7.3284 4.2325 2.9965 27 1 5.7175 2.4226 2.8975 28 1 5.9083 3.9783 1.0472 29 6 3.6583 2.8733 1.2025 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.4643 3.0244 -3.6559 36 1 1.7334 1.9510 -5.7710 37 1 1.0612 0.9683 -7.5910 38 1 -0.4620 -2.2753 -5.2208 39 1 0.1893 -1.3037 -3.4361 40 1 2.3096 1.3672 2.1240 41 1 0.8919 3.3776 2.2005 42 1 1.4278 3.8957 0.5451 43 1 4.3743 6.3276 4.6992 44 1 3.8961 3.2311 0.2007 45 1 4.5092 2.4035 1.6958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950658917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:56 Heat of formation + Delta-G solvation = 179.450006 kcal Electronic energy + Delta-G solvation = -29191.033031 eV Core-core repulsion = 25214.194974 eV Total energy + Delta-G solvation = -3976.838057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83232 -40.88251 -39.51139 -37.17847 -35.62267 -33.62622 -32.27097 -32.19784 -31.89523 -30.08984 -29.39194 -27.49062 -25.22108 -24.91696 -24.29513 -23.12120 -22.82116 -22.05896 -20.91511 -20.15642 -19.25772 -18.75206 -17.42821 -17.04554 -16.65878 -15.81190 -15.67403 -15.47811 -15.34474 -15.15522 -15.00013 -14.65706 -14.08794 -13.99465 -13.89524 -13.52094 -13.32392 -13.03990 -12.97147 -12.89684 -12.31455 -12.26762 -11.86391 -11.49612 -11.42062 -11.35300 -11.11574 -11.01261 -10.59404 -10.44412 -10.26150 -10.20798 -9.83394 -9.74906 -9.36868 -9.08915 -8.93356 -8.75371 -8.42003 -8.10555 -6.94232 -6.18498 -3.08516 0.24825 1.00933 1.36526 2.19092 2.26772 2.96920 3.11087 3.50218 3.60373 3.77714 3.79847 3.92271 4.07412 4.22011 4.48670 4.50576 4.61531 4.72060 4.81787 4.89975 5.02333 5.05315 5.21749 5.25329 5.32189 5.48648 5.54981 5.59919 5.60678 5.72892 5.78326 5.86310 5.91759 5.97316 6.07794 6.20471 6.27031 6.43920 6.48789 6.52732 6.58545 6.60153 6.70845 7.01595 7.24537 7.34946 7.50121 7.70193 8.35341 8.40331 9.10728 9.63301 10.51740 11.33656 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.002447 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.613431 B =11441.860185 C =11966.166805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 N -0.581 5.581 4 C 0.561 3.439 5 O -0.513 6.513 6 C 0.071 3.929 7 C -0.098 4.098 8 C -0.085 4.085 9 C -0.026 4.026 10 C -0.203 4.203 11 C 0.072 3.928 12 N -0.292 5.292 13 N -0.471 5.471 14 H 0.443 0.557 15 C 0.083 3.917 16 C 0.085 3.915 17 N -0.435 5.435 18 C 0.097 3.903 19 C 0.118 3.882 20 N -0.622 5.622 21 C -0.293 4.293 22 H 0.081 0.919 23 C -0.027 4.027 24 N -0.938 5.938 25 Si 1.075 2.925 26 H -0.298 1.298 27 H -0.294 1.294 28 H -0.287 1.287 29 C 0.077 3.923 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.189 0.811 38 H 0.184 0.816 39 H 0.157 0.843 40 H 0.115 0.885 41 H 0.040 0.960 42 H 0.051 0.949 43 H 0.259 0.741 44 H 0.081 0.919 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 -21.390 -23.520 34.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.313 5.313 4 C 0.347 3.653 5 O -0.388 6.388 6 C -0.066 4.066 7 C -0.119 4.119 8 C -0.111 4.111 9 C -0.030 4.030 10 C -0.215 4.215 11 C -0.116 4.116 12 N -0.113 5.113 13 N -0.177 5.177 14 H 0.288 0.712 15 C -0.066 4.066 16 C -0.075 4.075 17 N -0.146 5.146 18 C -0.007 4.007 19 C -0.010 4.010 20 N -0.350 5.350 21 C -0.419 4.419 22 H 0.099 0.901 23 C -0.225 4.225 24 N -0.581 5.581 25 Si 0.908 3.092 26 H -0.225 1.225 27 H -0.223 1.223 28 H -0.214 1.214 29 C -0.049 4.049 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.168 0.832 36 H 0.158 0.842 37 H 0.205 0.795 38 H 0.201 0.799 39 H 0.174 0.826 40 H 0.133 0.867 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.766 -21.553 -23.769 34.176 hybrid contribution -1.779 0.457 -0.108 1.840 sum -13.545 -21.096 -23.877 34.621 Atomic orbital electron populations 1.22063 0.95988 1.01277 1.01682 1.21879 0.94808 0.81764 1.02881 1.47890 1.63165 1.14285 1.05946 1.17880 0.79274 0.85390 0.82736 1.90826 1.43809 1.18336 1.85837 1.21305 0.98860 0.92141 0.94287 1.22063 0.97451 1.01026 0.91340 1.21492 0.96715 0.94106 0.98821 1.19208 0.96996 0.94371 0.92422 1.18800 1.12160 0.97501 0.93033 1.24072 0.98083 0.99055 0.90388 1.77285 1.17457 0.97198 1.19380 1.46258 1.47278 1.19676 1.04463 0.71242 1.22709 0.98178 0.97448 0.88307 1.22824 0.98189 0.99784 0.86751 1.68172 1.08202 1.08150 1.30116 1.23681 0.99088 0.93593 0.84341 1.22658 0.90869 0.90655 0.96791 1.45778 1.02292 1.41334 1.45617 1.20136 0.95887 1.09651 1.16241 0.90103 1.25685 0.96568 1.00987 0.99239 1.70926 1.35521 1.25906 1.25792 0.83652 0.75620 0.74283 0.75616 1.22537 1.22254 1.21425 1.23504 0.94309 0.89733 0.97329 0.92455 0.93482 0.91900 0.88118 0.91621 0.83217 0.84238 0.79466 0.79881 0.82597 0.86681 0.94159 0.93174 0.93106 0.90188 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.51 37.16 0.35 -1.24 16 2 C 0.11 1.29 5.72 -4.04 -0.02 1.27 16 3 N -0.58 -9.24 2.77 -166.81 -0.46 -9.70 16 4 C 0.56 9.39 7.09 -12.29 -0.09 9.31 16 5 O -0.51 -10.55 11.86 5.32 0.06 -10.48 16 6 C 0.07 0.92 6.51 -82.99 -0.54 0.38 16 7 C -0.10 -1.09 9.61 -39.11 -0.38 -1.47 16 8 C -0.09 -0.70 9.68 -39.01 -0.38 -1.08 16 9 C -0.03 -0.20 5.90 -104.63 -0.62 -0.82 16 10 C -0.20 -1.28 6.05 -105.34 -0.64 -1.92 16 11 C 0.07 0.48 11.45 -17.03 -0.20 0.28 16 12 N -0.29 -2.21 12.66 30.82 0.39 -1.82 16 13 N -0.47 -2.14 7.32 30.65 0.22 -1.91 16 14 H 0.44 0.60 8.96 -182.67 -1.64 -1.04 16 15 C 0.08 0.34 11.40 -16.88 -0.19 0.15 16 16 C 0.08 0.65 10.73 -17.22 -0.18 0.46 16 17 N -0.44 -4.53 3.95 -9.54 -0.04 -4.57 16 18 C 0.10 1.86 4.80 -67.68 -0.32 1.53 16 19 C 0.12 2.62 8.10 -8.52 -0.07 2.55 16 20 N -0.62 -16.77 3.69 -184.65 -0.68 -17.45 16 21 C -0.29 -9.01 11.09 -15.06 -0.17 -9.17 16 22 H 0.08 2.60 8.05 -52.49 -0.42 2.17 16 23 C -0.03 -0.85 5.50 -17.43 -0.10 -0.94 16 24 N -0.94 -30.91 13.70 55.49 0.76 -30.15 16 25 Si 1.07 28.83 25.10 -169.99 -4.27 24.57 16 26 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 27 H -0.29 -7.35 6.35 56.52 0.36 -6.99 16 28 H -0.29 -7.50 6.66 56.52 0.38 -7.12 16 29 C 0.08 1.83 5.29 -8.38 -0.04 1.78 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.72 6.32 -51.93 -0.33 0.39 16 33 H 0.10 1.11 5.58 -51.93 -0.29 0.82 16 34 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 35 H 0.15 1.71 7.64 -52.49 -0.40 1.31 16 36 H 0.14 0.77 7.16 -52.49 -0.38 0.40 16 37 H 0.19 0.81 7.41 -52.49 -0.39 0.42 16 38 H 0.18 0.09 7.30 -52.49 -0.38 -0.29 16 39 H 0.16 0.65 7.03 -52.49 -0.37 0.28 16 40 H 0.12 2.01 7.93 -51.93 -0.41 1.60 16 41 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.05 1.17 6.37 -51.93 -0.33 0.84 16 43 H 0.26 8.40 8.73 -40.82 -0.36 8.05 16 44 H 0.08 2.02 5.25 -51.93 -0.27 1.74 16 45 H 0.05 1.11 4.01 -51.93 -0.21 0.90 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -39.37 359.68 -8.88 -48.25 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.72 Total: -3.23 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -3.58 Total: 1.09 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: 0.19 Total: -65.61 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.06 Total: -10.48 kcal Atomic # 14 Polarization: 28.83 SS G_CDS: -4.27 Total: 24.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.37 -8.88 -48.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950658917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.702 kcal (2) G-P(sol) polarization free energy of solvation -39.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds