Wall clock time and date at job start Wed Apr 1 2020 00:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47417 * 2 1 4 4 C 1.34780 * 120.00092 * 275.26084 * 3 2 1 5 5 O 1.21549 * 120.00171 * 183.53905 * 4 3 2 6 6 C 1.47933 * 119.99797 * 3.53062 * 4 3 2 7 7 C 1.39509 * 119.59702 * 186.15223 * 6 4 3 8 8 C 1.38227 * 119.18967 * 180.02562 * 7 6 4 9 9 C 1.39790 * 118.38633 * 0.02562 * 8 7 6 10 10 C 1.48263 * 120.43243 * 180.02562 * 9 8 7 11 11 C 1.40952 * 126.25311 * 359.68351 * 10 9 8 12 12 N 1.30632 * 108.07063 * 179.81510 * 11 10 9 13 13 N 1.39997 * 108.56799 * 0.45150 * 12 11 10 14 14 H 0.97004 * 125.87159 * 179.73764 * 13 12 11 15 15 C 1.34713 * 108.25987 * 359.70577 * 13 12 11 16 16 C 1.39740 * 119.12487 * 359.97438 * 9 8 7 17 17 N 1.31306 * 120.72988 * 359.72328 * 16 9 8 18 18 C 1.46504 * 120.00193 * 95.24934 * 3 2 1 19 19 C 1.53494 * 114.20815 * 231.72475 * 18 3 2 20 20 N 1.47064 * 87.98582 * 220.14818 * 19 18 3 21 21 C 1.36936 * 136.05657 * 207.08749 * 20 19 18 22 22 H 1.07999 * 120.00283 * 354.70923 * 21 20 19 23 23 C 1.38816 * 119.99685 * 174.71544 * 21 20 19 24 24 N 1.31625 * 119.99441 * 183.82564 * 23 21 20 25 25 Si 1.86795 * 120.00100 * 3.82336 * 23 21 20 26 26 H 1.48502 * 109.46750 * 174.23206 * 25 23 21 27 27 H 1.48500 * 109.47336 * 294.22779 * 25 23 21 28 28 H 1.48490 * 109.47055 * 54.23116 * 25 23 21 29 29 C 1.47065 * 87.88237 * 27.34614 * 20 19 18 30 30 H 1.09000 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47181 * 300.00270 * 1 2 3 32 32 H 1.09002 * 109.46943 * 59.99755 * 1 2 3 33 33 H 1.08997 * 109.47442 * 239.99891 * 2 1 3 34 34 H 1.09005 * 109.47001 * 119.99711 * 2 1 3 35 35 H 1.08002 * 120.40337 * 359.97438 * 7 6 4 36 36 H 1.07996 * 120.80114 * 179.97438 * 8 7 6 37 37 H 1.07999 * 125.96166 * 359.97438 * 11 10 9 38 38 H 1.08002 * 126.20039 * 180.02562 * 15 13 12 39 39 H 1.08000 * 119.63439 * 179.97438 * 16 9 8 40 40 H 1.08996 * 113.27812 * 4.79967 * 18 3 2 41 41 H 1.09007 * 113.46295 * 105.37135 * 19 18 3 42 42 H 1.08992 * 113.47188 * 334.93752 * 19 18 3 43 43 H 0.96995 * 120.00018 * 5.00717 * 24 23 21 44 44 H 1.08999 * 113.46826 * 87.44063 * 29 20 19 45 45 H 1.08997 * 113.46678 * 217.87270 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1421 2.0522 -1.1623 5 8 2.6077 3.1750 -1.1693 6 6 1.7115 1.4222 -2.4296 7 6 1.9607 2.0691 -3.6402 8 6 1.5542 1.4730 -4.8193 9 6 0.9047 0.2371 -4.7497 10 6 0.4500 -0.4429 -5.9861 11 6 0.5965 0.0368 -7.3034 12 7 0.0752 -0.8435 -8.1156 13 7 -0.4299 -1.9060 -7.3568 14 1 -0.8739 -2.6941 -7.7071 15 6 -0.1929 -1.6461 -6.0564 16 6 0.6907 -0.3493 -3.4994 17 7 1.0967 0.2450 -2.4012 18 6 2.3720 2.0331 1.2634 19 6 1.7051 3.3993 1.4750 20 7 2.9782 3.8758 2.0363 21 6 3.3618 4.8349 2.9353 22 1 2.6290 5.5125 3.3478 23 6 4.6928 4.9363 3.3162 24 7 5.0495 5.8077 4.2359 25 14 5.9776 3.8360 2.5237 26 1 7.3284 4.2325 2.9965 27 1 5.7175 2.4226 2.8975 28 1 5.9083 3.9783 1.0472 29 6 3.6583 2.8733 1.2025 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.4643 3.0244 -3.6559 36 1 1.7334 1.9510 -5.7710 37 1 1.0612 0.9683 -7.5910 38 1 -0.4620 -2.2753 -5.2208 39 1 0.1893 -1.3037 -3.4361 40 1 2.3096 1.3672 2.1240 41 1 0.8919 3.3776 2.2005 42 1 1.4278 3.8957 0.5451 43 1 4.3743 6.3276 4.6992 44 1 3.8961 3.2311 0.2007 45 1 4.5092 2.4035 1.6958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950658917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:55 Heat of formation + Delta-G solvation = 150.814976 kcal Electronic energy + Delta-G solvation = -29192.274739 eV Core-core repulsion = 25214.194974 eV Total energy + Delta-G solvation = -3978.079765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.32222 -41.93362 -40.60993 -38.74774 -36.81830 -34.67890 -34.12705 -32.95421 -32.34372 -31.27994 -30.18768 -29.16865 -27.05070 -26.04403 -24.92219 -24.35300 -24.02950 -22.53402 -21.95227 -21.32693 -20.55660 -19.62077 -19.16526 -18.26704 -17.71279 -17.11313 -16.82274 -16.65255 -16.29286 -15.87717 -15.75324 -15.55901 -15.44682 -15.14978 -14.91884 -14.83965 -14.56714 -14.33273 -13.96185 -13.81658 -13.64289 -13.41712 -13.14483 -12.98369 -12.91013 -12.51187 -12.41164 -12.17534 -11.89333 -11.82669 -11.43518 -11.19675 -11.11306 -11.00582 -10.87364 -10.69542 -10.51668 -10.12175 -9.52933 -9.15366 -8.91259 -8.66709 -5.48996 -0.47737 0.35005 0.97230 1.33720 1.46792 1.51002 1.66974 1.89124 2.00924 2.09159 2.50229 3.00469 3.05265 3.09564 3.25812 3.56077 3.58739 3.74234 3.87688 3.97041 4.11082 4.11969 4.25196 4.28765 4.33287 4.43950 4.56232 4.60486 4.66096 4.72434 4.77658 4.82135 4.85121 4.87438 4.97891 5.11431 5.12177 5.24372 5.30133 5.32380 5.49611 5.57566 5.76395 5.83750 5.91637 6.38028 6.44210 6.64230 6.67837 6.80649 7.19194 7.29088 8.25654 8.87955 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.002447 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.613431 B =11441.860185 C =11966.166805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.106 3.894 3 N -0.581 5.581 4 C 0.555 3.445 5 O -0.565 6.565 6 C 0.042 3.958 7 C -0.107 4.107 8 C -0.089 4.089 9 C -0.005 4.005 10 C -0.231 4.231 11 C 0.065 3.935 12 N -0.332 5.332 13 N -0.463 5.463 14 H 0.456 0.544 15 C 0.110 3.890 16 C 0.088 3.912 17 N -0.435 5.435 18 C 0.131 3.869 19 C 0.116 3.884 20 N -0.651 5.651 21 C -0.287 4.287 22 H 0.051 0.949 23 C -0.082 4.082 24 N -0.968 5.968 25 Si 1.114 2.886 26 H -0.299 1.299 27 H -0.261 1.261 28 H -0.284 1.284 29 C 0.070 3.930 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.162 0.838 37 H 0.199 0.801 38 H 0.228 0.772 39 H 0.201 0.799 40 H 0.142 0.858 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.938 -26.321 -25.668 39.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 N -0.312 5.312 4 C 0.344 3.656 5 O -0.445 6.445 6 C -0.094 4.094 7 C -0.129 4.129 8 C -0.115 4.115 9 C -0.008 4.008 10 C -0.243 4.243 11 C -0.122 4.122 12 N -0.153 5.153 13 N -0.170 5.170 14 H 0.304 0.696 15 C -0.041 4.041 16 C -0.073 4.073 17 N -0.146 5.146 18 C 0.026 3.974 19 C -0.010 4.010 20 N -0.380 5.380 21 C -0.415 4.415 22 H 0.069 0.931 23 C -0.274 4.274 24 N -0.613 5.613 25 Si 0.941 3.059 26 H -0.227 1.227 27 H -0.187 1.187 28 H -0.210 1.210 29 C -0.055 4.055 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.179 0.821 37 H 0.216 0.784 38 H 0.244 0.756 39 H 0.218 0.782 40 H 0.160 0.840 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.416 -26.553 -25.958 39.483 hybrid contribution -1.503 1.899 0.319 2.443 sum -14.920 -24.654 -25.639 38.572 Atomic orbital electron populations 1.21996 0.94755 1.02904 1.00548 1.22197 0.95738 0.79217 1.04330 1.47956 1.63031 1.15748 1.04437 1.18531 0.78099 0.84833 0.84114 1.90785 1.46177 1.20698 1.86791 1.20711 1.02127 0.93989 0.92554 1.22004 0.98051 1.00713 0.92091 1.21719 0.96498 0.94662 0.98592 1.19366 0.94832 0.93455 0.93158 1.18804 1.14449 0.98875 0.92192 1.24396 0.97618 0.99436 0.90735 1.77256 1.18923 0.98425 1.20691 1.46355 1.46509 1.19511 1.04670 0.69632 1.23368 0.95207 0.96544 0.88966 1.23503 0.97258 1.00779 0.85776 1.68065 1.08012 1.07055 1.31453 1.23131 0.94781 0.92687 0.86825 1.22742 0.89807 0.92511 0.95982 1.45914 1.05202 1.41120 1.45738 1.20032 0.95414 1.09702 1.16333 0.93138 1.26979 0.98898 1.01994 0.99530 1.71013 1.35270 1.27517 1.27542 0.83168 0.73205 0.74562 0.74933 1.22674 1.18724 1.21046 1.23593 0.96389 0.89769 0.95775 0.89331 0.94817 0.92851 0.86829 0.90025 0.84957 0.82052 0.78383 0.75609 0.78245 0.84040 0.93120 0.94493 0.94418 0.91624 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.51 71.98 0.68 -1.83 16 2 C 0.11 2.15 5.72 86.38 0.49 2.64 16 3 N -0.58 -17.69 2.77 -799.93 -2.21 -19.90 16 4 C 0.56 18.69 7.09 86.81 0.62 19.31 16 5 O -0.57 -24.34 11.86 -3.87 -0.05 -24.38 16 6 C 0.04 1.04 6.51 41.87 0.27 1.32 16 7 C -0.11 -2.39 9.61 22.57 0.22 -2.17 16 8 C -0.09 -1.31 9.68 22.64 0.22 -1.09 16 9 C 0.00 -0.05 5.90 -19.87 -0.12 -0.17 16 10 C -0.23 -2.02 6.05 -20.33 -0.12 -2.14 16 11 C 0.07 0.71 11.45 85.54 0.98 1.69 16 12 N -0.33 -4.21 12.66 -56.41 -0.71 -4.92 16 13 N -0.46 -2.45 7.32 -56.95 -0.42 -2.86 16 14 H 0.46 -0.47 8.96 -213.38 -1.91 -2.38 16 15 C 0.11 0.33 11.40 83.87 0.96 1.29 16 16 C 0.09 0.94 10.73 85.13 0.91 1.86 16 17 N -0.43 -7.74 3.95 -184.11 -0.73 -8.46 16 18 C 0.13 4.86 4.80 45.55 0.22 5.08 16 19 C 0.12 5.23 8.10 83.17 0.67 5.91 16 20 N -0.65 -35.78 3.69 -738.12 -2.72 -38.51 16 21 C -0.29 -18.31 11.09 84.03 0.93 -17.38 16 22 H 0.05 3.43 8.05 -2.91 -0.02 3.41 16 23 C -0.08 -5.31 5.50 84.86 0.47 -4.84 16 24 N -0.97 -65.92 13.70 21.65 0.30 -65.63 16 25 Si 1.11 58.98 25.10 68.60 1.72 60.70 16 26 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 27 H -0.26 -12.31 6.35 99.48 0.63 -11.68 16 28 H -0.28 -14.72 6.66 99.48 0.66 -14.05 16 29 C 0.07 3.32 5.29 83.26 0.44 3.76 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.05 1.05 6.32 -2.39 -0.02 1.04 16 33 H 0.11 2.08 5.58 -2.39 -0.01 2.07 16 34 H 0.08 1.42 7.90 -2.38 -0.02 1.40 16 35 H 0.13 3.29 7.64 -2.91 -0.02 3.26 16 36 H 0.16 1.52 7.16 -2.91 -0.02 1.49 16 37 H 0.20 1.35 7.41 -2.91 -0.02 1.33 16 38 H 0.23 -1.44 7.30 -2.91 -0.02 -1.46 16 39 H 0.20 0.28 7.03 -2.91 -0.02 0.26 16 40 H 0.14 4.54 7.93 -2.39 -0.02 4.52 16 41 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.04 1.79 6.37 -2.39 -0.02 1.77 16 43 H 0.25 16.80 8.73 -92.71 -0.81 15.99 16 44 H 0.07 3.39 5.25 -2.39 -0.01 3.38 16 45 H 0.05 2.13 4.01 -2.39 -0.01 2.12 16 Total: -1.00 -91.52 359.68 2.00 -89.52 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -1.01 Total: 1.21 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 7.84 Total: 13.24 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -6.50 Total: -140.29 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 58.98 SS G_CDS: 1.72 Total: 60.70 kcal Total: -91.52 2.00 -89.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950658917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.333 kcal (2) G-P(sol) polarization free energy of solvation -91.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds