Wall clock time and date at job start Wed Apr 1 2020 00:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46867 * 2 1 4 4 C 1.34776 * 120.00213 * 274.07698 * 3 2 1 5 5 O 1.21514 * 120.00283 * 183.27847 * 4 3 2 6 6 C 1.48162 * 119.99787 * 3.27345 * 4 3 2 7 7 C 1.39221 * 119.68708 * 181.28531 * 6 4 3 8 8 C 1.38723 * 119.18948 * 179.75660 * 7 6 4 9 9 C 1.38404 * 118.55319 * 0.51026 * 8 7 6 10 10 C 1.39263 * 119.30384 * 359.73499 * 9 8 7 11 11 N 1.39822 * 119.61763 * 180.02562 * 10 9 8 12 12 C 1.37184 * 126.48611 * 184.73204 * 11 10 9 13 13 C 1.34607 * 106.82935 * 179.89614 * 12 11 10 14 14 N 1.34160 * 108.21965 * 0.36696 * 13 12 11 15 15 C 1.30482 * 109.36799 * 359.76442 * 14 13 12 16 16 N 1.31967 * 120.76033 * 0.02562 * 10 9 8 17 17 C 1.46504 * 120.00101 * 94.07575 * 3 2 1 18 18 C 1.53498 * 114.20835 * 232.09363 * 17 3 2 19 19 N 1.47066 * 87.98489 * 220.15064 * 18 17 3 20 20 C 1.36937 * 136.05540 * 207.08829 * 19 18 17 21 21 H 1.07996 * 119.99918 * 354.54842 * 20 19 18 22 22 C 1.38813 * 119.99741 * 174.54930 * 20 19 18 23 23 N 1.31623 * 119.99724 * 183.10492 * 22 20 19 24 24 Si 1.86794 * 120.00430 * 3.10032 * 22 20 19 25 25 H 1.48493 * 109.47379 * 175.84261 * 24 22 20 26 26 H 1.48498 * 109.47369 * 295.84902 * 24 22 20 27 27 H 1.48500 * 109.46741 * 55.84445 * 24 22 20 28 28 C 1.47067 * 87.88685 * 27.34156 * 19 18 17 29 29 H 1.09008 * 109.46902 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47181 * 299.99670 * 1 2 3 31 31 H 1.08997 * 109.47204 * 60.00301 * 1 2 3 32 32 H 1.08995 * 109.46895 * 239.99734 * 2 1 3 33 33 H 1.08997 * 109.47204 * 119.99699 * 2 1 3 34 34 H 1.07997 * 120.40768 * 359.97438 * 7 6 4 35 35 H 1.07996 * 120.72294 * 180.23938 * 8 7 6 36 36 H 1.08000 * 120.34886 * 179.70905 * 9 8 7 37 37 H 1.08003 * 126.58048 * 359.97438 * 12 11 10 38 38 H 1.08003 * 125.89564 * 180.13357 * 13 12 11 39 39 H 1.08003 * 125.71725 * 179.97438 * 15 14 13 40 40 H 1.09000 * 113.27730 * 5.16201 * 17 3 2 41 41 H 1.08992 * 113.46777 * 105.36703 * 18 17 3 42 42 H 1.08998 * 113.46520 * 334.92767 * 18 17 3 43 43 H 0.97004 * 120.00016 * 5.01703 * 23 22 20 44 44 H 1.09001 * 113.46612 * 87.44053 * 28 19 18 45 45 H 1.09005 * 113.46775 * 217.87926 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1647 2.0442 -1.1642 5 8 2.6257 3.1685 -1.1694 6 6 1.7635 1.4022 -2.4378 7 6 1.9424 2.0826 -3.6392 8 6 1.5679 1.4697 -4.8261 9 6 1.0171 0.2012 -4.7705 10 6 0.8613 -0.4206 -3.5341 11 7 0.3060 -1.7023 -3.4704 12 6 0.0057 -2.4054 -2.3314 13 6 -0.5095 -3.5848 -2.7259 14 7 -0.5186 -3.6109 -4.0672 15 6 -0.0329 -2.4897 -4.5251 16 7 1.2315 0.1859 -2.4221 17 6 2.3475 2.0418 1.2655 18 6 1.6695 3.4053 1.4588 19 7 2.9305 3.8919 2.0384 20 6 3.2940 4.8579 2.9383 21 1 2.5511 5.5351 3.3331 22 6 4.6173 4.9667 3.3431 23 7 4.9561 5.8548 4.2536 24 14 5.9173 3.8528 2.5958 25 1 7.2545 4.2332 3.1175 26 1 5.6277 2.4420 2.9577 27 1 5.9030 3.9976 1.1180 28 6 3.6299 2.8889 1.2213 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3708 3.0739 -3.6475 35 1 1.6992 1.9732 -5.7724 36 1 0.7110 -0.3010 -5.6763 37 1 0.1530 -2.0755 -1.3136 38 1 -0.8526 -4.3754 -2.0750 39 1 0.0811 -2.2311 -5.5675 40 1 2.2745 1.3800 2.1286 41 1 0.8446 3.3829 2.1708 42 1 1.4050 3.8952 0.5217 43 1 4.2720 6.3827 4.6944 44 1 3.8821 3.2427 0.2216 45 1 4.4752 2.4265 1.7311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950691019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:04 Heat of formation + Delta-G solvation = 185.534138 kcal Electronic energy + Delta-G solvation = -30037.690871 eV Core-core repulsion = 26061.116642 eV Total energy + Delta-G solvation = -3976.574229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.79469 -41.17329 -39.81656 -37.39199 -35.85606 -34.62488 -33.18728 -32.25376 -30.68710 -30.42431 -29.67575 -27.73236 -25.50981 -25.21093 -24.57321 -23.40624 -23.12143 -21.60066 -21.41889 -20.32427 -19.54008 -18.57938 -17.55507 -17.15227 -16.74928 -16.69793 -16.24226 -15.75267 -15.37836 -15.34340 -14.77205 -14.54570 -14.30365 -14.20259 -14.12336 -13.86193 -13.44205 -13.36364 -13.10035 -13.00224 -12.68367 -12.47971 -11.98523 -11.68259 -11.50498 -11.28930 -11.23820 -11.11225 -10.75147 -10.55592 -10.41966 -10.30901 -10.06743 -9.58004 -9.27173 -9.19535 -9.02224 -8.90806 -8.84549 -8.29515 -7.03155 -6.25454 -3.16405 0.02773 0.38370 1.71150 1.92447 2.57394 2.71771 2.84621 3.42875 3.43382 3.52838 3.57048 3.71397 3.96181 4.16707 4.25680 4.35109 4.48168 4.64971 4.72285 4.89958 4.91724 4.97898 5.03231 5.08846 5.13182 5.31308 5.37772 5.42945 5.45620 5.51289 5.62233 5.68281 5.71587 5.81072 5.92783 6.03779 6.19957 6.27073 6.32599 6.38266 6.40421 6.57215 6.65175 7.07670 7.14137 7.20986 7.46186 7.54172 8.14527 8.28397 9.03362 9.55647 10.42872 11.26554 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.002974 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.855479 B = 9412.679978 C =10049.765576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.097 3.903 3 N -0.577 5.577 4 C 0.560 3.440 5 O -0.503 6.503 6 C 0.121 3.879 7 C -0.120 4.120 8 C -0.051 4.051 9 C -0.162 4.162 10 C 0.335 3.665 11 N -0.408 5.408 12 C -0.031 4.031 13 C -0.031 4.031 14 N -0.478 5.478 15 C 0.192 3.808 16 N -0.460 5.460 17 C 0.096 3.904 18 C 0.118 3.882 19 N -0.620 5.620 20 C -0.295 4.295 21 H 0.082 0.918 22 C -0.025 4.025 23 N -0.937 5.937 24 Si 1.075 2.925 25 H -0.297 1.297 26 H -0.293 1.293 27 H -0.288 1.288 28 C 0.076 3.924 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.187 0.813 38 H 0.176 0.824 39 H 0.211 0.789 40 H 0.118 0.882 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.260 0.740 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 -18.059 -20.738 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.308 5.308 4 C 0.345 3.655 5 O -0.377 6.377 6 C -0.018 4.018 7 C -0.141 4.141 8 C -0.077 4.077 9 C -0.185 4.185 10 C 0.105 3.895 11 N -0.091 5.091 12 C -0.160 4.160 13 C -0.175 4.175 14 N -0.195 5.195 15 C -0.090 4.090 16 N -0.176 5.176 17 C -0.008 4.008 18 C -0.009 4.009 19 N -0.348 5.348 20 C -0.422 4.422 21 H 0.100 0.900 22 C -0.224 4.224 23 N -0.580 5.580 24 Si 0.908 3.092 25 H -0.224 1.224 26 H -0.222 1.222 27 H -0.215 1.215 28 C -0.050 4.050 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.203 0.797 38 H 0.194 0.806 39 H 0.227 0.773 40 H 0.136 0.864 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.422 -18.564 -20.174 28.989 hybrid contribution -1.477 1.314 -0.272 1.996 sum -10.899 -17.250 -20.446 28.886 Atomic orbital electron populations 1.22146 0.96080 1.01277 1.01974 1.22107 0.94672 0.82080 1.03696 1.47896 1.62910 1.14190 1.05794 1.17796 0.79651 0.85498 0.82518 1.90851 1.43352 1.17877 1.85653 1.21247 0.96238 0.89112 0.95189 1.22254 0.98306 1.02242 0.91280 1.21546 0.93646 0.93185 0.99288 1.21753 1.02789 0.96868 0.97041 1.18293 0.95379 0.85309 0.90520 1.43108 1.46086 1.11323 1.08582 1.23254 1.06056 0.94128 0.92566 1.22430 1.05679 0.97896 0.91515 1.70342 1.18539 1.19833 1.10746 1.25324 1.02221 0.87182 0.94260 1.67610 1.11961 1.10106 1.27893 1.23775 0.99469 0.93527 0.84029 1.22652 0.91130 0.90377 0.96788 1.45756 1.02272 1.40935 1.45871 1.20133 0.96327 1.09274 1.16425 0.90045 1.25687 0.96804 1.00936 0.98930 1.70926 1.35358 1.24718 1.26950 0.83652 0.75723 0.74257 0.75529 1.22417 1.22192 1.21515 1.23523 0.94302 0.89672 0.97494 0.92134 0.92625 0.92537 0.87463 0.91064 0.82312 0.82794 0.83589 0.79658 0.80634 0.77274 0.86449 0.94008 0.93252 0.93022 0.90248 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.84 37.16 0.33 -1.20 16 2 C 0.10 1.07 5.57 -4.04 -0.02 1.04 16 3 N -0.58 -8.52 2.76 -166.72 -0.46 -8.99 16 4 C 0.56 8.63 7.12 -12.19 -0.09 8.54 16 5 O -0.50 -9.59 11.86 5.35 0.06 -9.52 16 6 C 0.12 1.41 6.53 -83.02 -0.54 0.87 16 7 C -0.12 -1.10 9.63 -39.04 -0.38 -1.48 16 8 C -0.05 -0.30 10.16 -39.34 -0.40 -0.70 16 9 C -0.16 -0.96 9.51 -39.14 -0.37 -1.33 16 10 C 0.33 2.84 7.50 -154.53 -1.16 1.69 16 11 N -0.41 -3.42 2.98 -63.81 -0.19 -3.61 16 12 C -0.03 -0.26 11.17 -16.44 -0.18 -0.44 16 13 C -0.03 -0.27 11.85 -17.82 -0.21 -0.48 16 14 N -0.48 -4.73 11.24 -14.46 -0.16 -4.89 16 15 C 0.19 1.46 11.89 -89.58 -1.07 0.39 16 16 N -0.46 -4.68 3.76 -8.85 -0.03 -4.71 16 17 C 0.10 1.73 4.80 -67.67 -0.32 1.41 16 18 C 0.12 2.51 8.10 -8.50 -0.07 2.44 16 19 N -0.62 -16.17 3.69 -184.61 -0.68 -16.86 16 20 C -0.30 -8.87 11.09 -15.06 -0.17 -9.04 16 21 H 0.08 2.56 8.05 -52.49 -0.42 2.14 16 22 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 23 N -0.94 -30.37 13.70 55.49 0.76 -29.61 16 24 Si 1.07 28.17 25.10 -169.99 -4.27 23.90 16 25 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 26 H -0.29 -7.14 6.31 56.52 0.36 -6.79 16 27 H -0.29 -7.32 6.74 56.52 0.38 -6.94 16 28 C 0.08 1.73 5.32 -8.37 -0.04 1.68 16 29 H 0.06 0.46 6.22 -51.92 -0.32 0.13 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.62 6.67 -51.93 -0.35 0.27 16 32 H 0.11 1.14 5.22 -52.01 -0.27 0.87 16 33 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 34 H 0.16 1.48 7.63 -52.49 -0.40 1.08 16 35 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 36 H 0.15 0.39 6.77 -52.49 -0.36 0.03 16 37 H 0.19 1.37 4.89 -52.48 -0.26 1.12 16 38 H 0.18 1.12 8.06 -52.48 -0.42 0.69 16 39 H 0.21 0.75 7.06 -52.48 -0.37 0.37 16 40 H 0.12 1.94 7.95 -51.93 -0.41 1.53 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.09 6.39 -51.93 -0.33 0.76 16 43 H 0.26 8.30 8.73 -40.82 -0.36 7.94 16 44 H 0.08 1.91 5.26 -51.93 -0.27 1.64 16 45 H 0.05 1.12 3.94 -51.93 -0.20 0.92 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -37.48 354.92 -9.70 -47.19 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.29 Total: -0.77 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -4.79 Total: 2.52 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -0.77 Total: -68.67 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.52 kcal Atomic # 14 Polarization: 28.17 SS G_CDS: -4.27 Total: 23.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.48 -9.70 -47.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950691019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.720 kcal (2) G-P(sol) polarization free energy of solvation -37.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds