Wall clock time and date at job start Wed Apr 1 2020 00:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46867 * 2 1 4 4 C 1.34776 * 120.00213 * 274.07698 * 3 2 1 5 5 O 1.21514 * 120.00283 * 183.27847 * 4 3 2 6 6 C 1.48162 * 119.99787 * 3.27345 * 4 3 2 7 7 C 1.39221 * 119.68708 * 181.28531 * 6 4 3 8 8 C 1.38723 * 119.18948 * 179.75660 * 7 6 4 9 9 C 1.38404 * 118.55319 * 0.51026 * 8 7 6 10 10 C 1.39263 * 119.30384 * 359.73499 * 9 8 7 11 11 N 1.39822 * 119.61763 * 180.02562 * 10 9 8 12 12 C 1.37184 * 126.48611 * 184.73204 * 11 10 9 13 13 C 1.34607 * 106.82935 * 179.89614 * 12 11 10 14 14 N 1.34160 * 108.21965 * 0.36696 * 13 12 11 15 15 C 1.30482 * 109.36799 * 359.76442 * 14 13 12 16 16 N 1.31967 * 120.76033 * 0.02562 * 10 9 8 17 17 C 1.46504 * 120.00101 * 94.07575 * 3 2 1 18 18 C 1.53498 * 114.20835 * 232.09363 * 17 3 2 19 19 N 1.47066 * 87.98489 * 220.15064 * 18 17 3 20 20 C 1.36937 * 136.05540 * 207.08829 * 19 18 17 21 21 H 1.07996 * 119.99918 * 354.54842 * 20 19 18 22 22 C 1.38813 * 119.99741 * 174.54930 * 20 19 18 23 23 N 1.31623 * 119.99724 * 183.10492 * 22 20 19 24 24 Si 1.86794 * 120.00430 * 3.10032 * 22 20 19 25 25 H 1.48493 * 109.47379 * 175.84261 * 24 22 20 26 26 H 1.48498 * 109.47369 * 295.84902 * 24 22 20 27 27 H 1.48500 * 109.46741 * 55.84445 * 24 22 20 28 28 C 1.47067 * 87.88685 * 27.34156 * 19 18 17 29 29 H 1.09008 * 109.46902 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47181 * 299.99670 * 1 2 3 31 31 H 1.08997 * 109.47204 * 60.00301 * 1 2 3 32 32 H 1.08995 * 109.46895 * 239.99734 * 2 1 3 33 33 H 1.08997 * 109.47204 * 119.99699 * 2 1 3 34 34 H 1.07997 * 120.40768 * 359.97438 * 7 6 4 35 35 H 1.07996 * 120.72294 * 180.23938 * 8 7 6 36 36 H 1.08000 * 120.34886 * 179.70905 * 9 8 7 37 37 H 1.08003 * 126.58048 * 359.97438 * 12 11 10 38 38 H 1.08003 * 125.89564 * 180.13357 * 13 12 11 39 39 H 1.08003 * 125.71725 * 179.97438 * 15 14 13 40 40 H 1.09000 * 113.27730 * 5.16201 * 17 3 2 41 41 H 1.08992 * 113.46777 * 105.36703 * 18 17 3 42 42 H 1.08998 * 113.46520 * 334.92767 * 18 17 3 43 43 H 0.97004 * 120.00016 * 5.01703 * 23 22 20 44 44 H 1.09001 * 113.46612 * 87.44053 * 28 19 18 45 45 H 1.09005 * 113.46775 * 217.87926 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1647 2.0442 -1.1642 5 8 2.6257 3.1685 -1.1694 6 6 1.7635 1.4022 -2.4378 7 6 1.9424 2.0826 -3.6392 8 6 1.5679 1.4697 -4.8261 9 6 1.0171 0.2012 -4.7705 10 6 0.8613 -0.4206 -3.5341 11 7 0.3060 -1.7023 -3.4704 12 6 0.0057 -2.4054 -2.3314 13 6 -0.5095 -3.5848 -2.7259 14 7 -0.5186 -3.6109 -4.0672 15 6 -0.0329 -2.4897 -4.5251 16 7 1.2315 0.1859 -2.4221 17 6 2.3475 2.0418 1.2655 18 6 1.6695 3.4053 1.4588 19 7 2.9305 3.8919 2.0384 20 6 3.2940 4.8579 2.9383 21 1 2.5511 5.5351 3.3331 22 6 4.6173 4.9667 3.3431 23 7 4.9561 5.8548 4.2536 24 14 5.9173 3.8528 2.5958 25 1 7.2545 4.2332 3.1175 26 1 5.6277 2.4420 2.9577 27 1 5.9030 3.9976 1.1180 28 6 3.6299 2.8889 1.2213 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3708 3.0739 -3.6475 35 1 1.6992 1.9732 -5.7724 36 1 0.7110 -0.3010 -5.6763 37 1 0.1530 -2.0755 -1.3136 38 1 -0.8526 -4.3754 -2.0750 39 1 0.0811 -2.2311 -5.5675 40 1 2.2745 1.3800 2.1286 41 1 0.8446 3.3829 2.1708 42 1 1.4050 3.8952 0.5217 43 1 4.2720 6.3827 4.6944 44 1 3.8821 3.2427 0.2216 45 1 4.4752 2.4265 1.7311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950691019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:03 Heat of formation + Delta-G solvation = 161.994194 kcal Electronic energy + Delta-G solvation = -30038.711640 eV Core-core repulsion = 26061.116642 eV Total energy + Delta-G solvation = -3977.594998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.37814 -42.17403 -40.87388 -38.90210 -36.99248 -35.26904 -34.63764 -33.72144 -31.59427 -31.22432 -30.44279 -29.44340 -27.10555 -26.45179 -25.18101 -24.58170 -24.27319 -22.50715 -22.03994 -21.71385 -20.68160 -19.65704 -19.34209 -18.32195 -17.71797 -17.38379 -17.16225 -16.97566 -16.55961 -16.50945 -15.72833 -15.66936 -15.30863 -15.18877 -15.11154 -14.99205 -14.66274 -14.48270 -14.24539 -13.99150 -13.86800 -13.43788 -13.24166 -13.18244 -13.06639 -12.66445 -12.54504 -12.23872 -12.06657 -11.83623 -11.50186 -11.28734 -11.15684 -11.10299 -11.02915 -10.96868 -10.34080 -9.93088 -9.63777 -9.46422 -9.18378 -8.68458 -5.51411 -0.63083 -0.21248 1.11291 1.32085 1.33361 1.44540 1.63845 1.66002 1.73819 2.12563 2.48523 2.66872 2.79198 3.01852 3.20505 3.44534 3.51413 3.54633 3.70843 3.84294 3.93546 4.04050 4.13455 4.20307 4.34214 4.36713 4.44362 4.46617 4.53009 4.54881 4.64145 4.68445 4.78231 4.81218 4.85656 4.95848 5.03522 5.08474 5.14765 5.17884 5.28839 5.43335 5.67351 5.71962 5.89658 6.07644 6.26510 6.47843 6.65677 6.96795 7.00604 7.26997 8.22595 8.86128 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.002974 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.855479 B = 9412.679978 C =10049.765576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.097 3.903 3 N -0.577 5.577 4 C 0.556 3.444 5 O -0.551 6.551 6 C 0.095 3.905 7 C -0.125 4.125 8 C -0.036 4.036 9 C -0.141 4.141 10 C 0.322 3.678 11 N -0.413 5.413 12 C -0.043 4.043 13 C -0.042 4.042 14 N -0.514 5.514 15 C 0.200 3.800 16 N -0.468 5.468 17 C 0.130 3.870 18 C 0.117 3.883 19 N -0.650 5.650 20 C -0.288 4.288 21 H 0.051 0.949 22 C -0.081 4.081 23 N -0.968 5.968 24 Si 1.114 2.886 25 H -0.299 1.299 26 H -0.261 1.261 27 H -0.282 1.282 28 C 0.069 3.931 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.195 0.805 36 H 0.189 0.811 37 H 0.192 0.808 38 H 0.189 0.811 39 H 0.250 0.750 40 H 0.142 0.858 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.247 0.753 44 H 0.069 0.931 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 -21.326 -24.095 34.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 N -0.308 5.308 4 C 0.344 3.656 5 O -0.429 6.429 6 C -0.043 4.043 7 C -0.146 4.146 8 C -0.062 4.062 9 C -0.162 4.162 10 C 0.092 3.908 11 N -0.095 5.095 12 C -0.172 4.172 13 C -0.185 4.185 14 N -0.231 5.231 15 C -0.081 4.081 16 N -0.183 5.183 17 C 0.025 3.975 18 C -0.010 4.010 19 N -0.378 5.378 20 C -0.415 4.415 21 H 0.069 0.931 22 C -0.273 4.273 23 N -0.614 5.614 24 Si 0.941 3.059 25 H -0.227 1.227 26 H -0.188 1.188 27 H -0.208 1.208 28 C -0.056 4.056 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.168 0.832 35 H 0.212 0.788 36 H 0.206 0.794 37 H 0.209 0.791 38 H 0.206 0.794 39 H 0.265 0.735 40 H 0.160 0.840 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.285 -21.897 -23.550 33.762 hybrid contribution -1.399 2.307 0.586 2.761 sum -11.684 -19.590 -22.964 32.367 Atomic orbital electron populations 1.22061 0.95075 1.02574 1.00856 1.22349 0.95386 0.79787 1.04903 1.47922 1.62897 1.15471 1.04462 1.18406 0.78406 0.84979 0.83822 1.90811 1.45485 1.19995 1.86594 1.20622 0.99401 0.90389 0.93861 1.22356 0.98341 1.02032 0.91910 1.21965 0.91813 0.93004 0.99375 1.22258 1.00161 0.96357 0.97455 1.18568 0.95733 0.85439 0.91081 1.43201 1.46215 1.11324 1.08795 1.23392 1.06470 0.94261 0.93097 1.22742 1.05679 0.98491 0.91622 1.70349 1.20150 1.21290 1.11334 1.26116 1.00283 0.86220 0.95515 1.67332 1.12144 1.09546 1.29290 1.23197 0.95197 0.92645 0.86492 1.22742 0.90052 0.92145 0.96030 1.45866 1.05257 1.40697 1.46024 1.20020 0.95753 1.09282 1.16483 0.93120 1.26977 0.99214 1.01950 0.99178 1.71015 1.35090 1.26411 1.28861 0.83179 0.73191 0.74422 0.75106 1.22738 1.18786 1.20825 1.23619 0.96245 0.89663 0.96088 0.89612 0.93532 0.93793 0.86691 0.89467 0.83238 0.78803 0.79389 0.79150 0.79382 0.73464 0.84013 0.93097 0.94229 0.94382 0.91360 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.84 71.98 0.64 -1.94 16 2 C 0.10 1.91 5.57 86.38 0.48 2.39 16 3 N -0.58 -16.41 2.76 -799.68 -2.21 -18.62 16 4 C 0.56 17.03 7.12 86.88 0.62 17.65 16 5 O -0.55 -21.57 11.86 -3.76 -0.04 -21.62 16 6 C 0.09 2.09 6.53 41.88 0.27 2.36 16 7 C -0.12 -2.08 9.63 22.62 0.22 -1.86 16 8 C -0.04 -0.27 10.16 22.43 0.23 -0.04 16 9 C -0.14 -0.95 9.51 22.56 0.21 -0.73 16 10 C 0.32 4.34 7.50 132.94 1.00 5.34 16 11 N -0.41 -5.52 2.98 -355.81 -1.06 -6.59 16 12 C -0.04 -0.63 11.17 83.02 0.93 0.30 16 13 C -0.04 -0.64 11.85 83.50 0.99 0.35 16 14 N -0.51 -8.84 11.24 -199.68 -2.25 -11.08 16 15 C 0.20 2.27 11.89 179.99 2.14 4.41 16 16 N -0.47 -8.44 3.76 -181.91 -0.68 -9.12 16 17 C 0.13 4.56 4.80 45.55 0.22 4.78 16 18 C 0.12 5.01 8.10 83.18 0.67 5.69 16 19 N -0.65 -34.44 3.69 -737.98 -2.72 -37.16 16 20 C -0.29 -17.91 11.09 84.03 0.93 -16.98 16 21 H 0.05 3.37 8.05 -2.91 -0.02 3.35 16 22 C -0.08 -5.14 5.50 84.86 0.47 -4.67 16 23 N -0.97 -65.00 13.70 21.65 0.30 -64.70 16 24 Si 1.11 57.50 25.10 68.60 1.72 59.23 16 25 H -0.30 -15.46 7.11 99.48 0.71 -14.76 16 26 H -0.26 -12.03 6.31 99.48 0.63 -11.40 16 27 H -0.28 -14.09 6.74 99.48 0.67 -13.42 16 28 C 0.07 3.13 5.32 83.27 0.44 3.57 16 29 H 0.09 1.05 6.22 -2.38 -0.01 1.04 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.89 6.67 -2.39 -0.02 0.88 16 32 H 0.12 2.18 5.22 -2.55 -0.01 2.17 16 33 H 0.09 1.45 7.91 -2.39 -0.02 1.44 16 34 H 0.15 2.73 7.63 -2.91 -0.02 2.70 16 35 H 0.19 -0.09 8.06 -2.91 -0.02 -0.12 16 36 H 0.19 -0.33 6.77 -2.91 -0.02 -0.35 16 37 H 0.19 2.36 4.89 -2.91 -0.01 2.35 16 38 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.25 0.38 7.06 -2.91 -0.02 0.36 16 40 H 0.14 4.33 7.95 -2.39 -0.02 4.31 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.04 1.80 6.39 -2.39 -0.02 1.79 16 43 H 0.25 16.59 8.73 -92.71 -0.81 15.78 16 44 H 0.07 3.34 5.26 -2.39 -0.01 3.32 16 45 H 0.05 2.09 3.94 -2.38 -0.01 2.08 16 Total: -1.00 -86.97 354.92 4.40 -82.57 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 0.89 Total: 6.49 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 10.46 Total: 20.61 kcal Atomic # 7 Polarization: -138.65 SS G_CDS: -8.63 Total: -147.28 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.04 Total: -21.62 kcal Atomic # 14 Polarization: 57.50 SS G_CDS: 1.72 Total: 59.23 kcal Total: -86.97 4.40 -82.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950691019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.569 kcal (2) G-P(sol) polarization free energy of solvation -86.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds