Wall clock time and date at job start Wed Apr 1 2020 00:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46806 * 2 1 4 4 C 1.34781 * 120.00052 * 83.41745 * 3 2 1 5 5 O 1.21594 * 120.00208 * 184.61294 * 4 3 2 6 6 C 1.47511 * 119.99525 * 4.61582 * 4 3 2 7 7 C 1.36625 * 125.76827 * 174.17386 * 6 4 3 8 8 N 1.35075 * 106.79800 * 180.13180 * 7 6 4 9 9 C 1.40221 * 126.61539 * 179.90574 * 8 7 6 10 10 C 1.38823 * 120.06771 * 179.71242 * 9 8 7 11 11 C 1.38125 * 119.93524 * 179.97438 * 10 9 8 12 12 C 1.38279 * 120.06485 * 359.97438 * 11 10 9 13 13 C 1.38277 * 120.13281 * 0.02562 * 12 11 10 14 14 C 1.38122 * 120.06395 * 0.02562 * 13 12 11 15 15 N 1.40210 * 106.77218 * 359.65000 * 8 7 6 16 16 N 1.28755 * 108.38820 * 0.22361 * 15 8 7 17 17 C 1.46495 * 120.00196 * 263.41735 * 3 2 1 18 18 C 1.53954 * 113.74164 * 222.84863 * 17 3 2 19 19 N 1.47817 * 86.03517 * 222.08421 * 18 17 3 20 20 C 1.36935 * 134.45447 * 204.64123 * 19 18 17 21 21 H 1.08002 * 119.99760 * 179.86794 * 20 19 18 22 22 C 1.38812 * 120.00330 * 359.86948 * 20 19 18 23 23 N 1.31626 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00439 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46783 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47066 * 119.99805 * 24 22 20 27 27 H 1.48497 * 109.47415 * 240.00380 * 24 22 20 28 28 C 1.47578 * 91.05259 * 24.54831 * 19 18 17 29 29 H 1.09000 * 109.46554 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46919 * 299.99588 * 1 2 3 31 31 H 1.08998 * 109.47218 * 60.00083 * 1 2 3 32 32 H 1.08999 * 109.46919 * 240.00411 * 2 1 3 33 33 H 1.08997 * 109.47092 * 120.00455 * 2 1 3 34 34 H 1.08003 * 126.59797 * 0.04677 * 7 6 4 35 35 H 1.08002 * 120.03376 * 359.95813 * 10 9 8 36 36 H 1.07994 * 119.96718 * 180.02562 * 11 10 9 37 37 H 1.07995 * 119.93538 * 179.74046 * 12 11 10 38 38 H 1.07998 * 119.96892 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.03195 * 179.97438 * 14 13 12 40 40 H 1.09003 * 112.94781 * 354.43663 * 17 3 2 41 41 H 1.08997 * 113.76449 * 336.34708 * 18 17 3 42 42 H 1.08997 * 113.77002 * 107.74569 * 18 17 3 43 43 H 0.96991 * 120.00350 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.77049 * 221.15365 * 28 19 18 45 45 H 1.09001 * 113.77048 * 89.74865 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1167 2.0612 1.1595 5 8 2.4415 3.2330 1.1516 6 6 1.8305 1.3838 2.4383 7 6 2.0003 1.9219 3.6826 8 7 1.6266 0.9759 4.5713 9 6 1.6371 1.0905 5.9688 10 6 1.2159 0.0281 6.7570 11 6 1.2278 0.1438 8.1333 12 6 1.6592 1.3162 8.7262 13 6 2.0793 2.3761 7.9438 14 6 2.0686 2.2667 6.5670 15 7 1.2207 -0.1408 3.8269 16 7 1.3540 0.1345 2.5762 17 6 2.3995 2.0234 -1.2603 18 6 3.7008 2.8411 -1.1705 19 7 2.9977 3.8568 -1.9823 20 6 3.4006 4.8528 -2.8313 21 1 2.6661 5.4770 -3.3184 22 6 4.7529 5.0601 -3.0659 23 7 5.6481 4.2997 -2.4719 24 14 5.3025 6.4183 -4.2246 25 1 4.1109 7.1249 -4.7594 26 1 6.1590 7.3816 -3.4873 27 1 6.0743 5.8286 -5.3479 28 6 1.6880 3.3651 -1.5124 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3646 2.9126 3.9115 35 1 0.8790 -0.8878 6.2944 36 1 0.9007 -0.6824 8.7469 37 1 1.6637 1.4059 9.8025 38 1 2.4153 3.2907 8.4097 39 1 2.3965 3.0950 5.9564 40 1 2.3669 1.3427 -2.1110 41 1 3.9411 3.1749 -0.1610 42 1 4.5464 2.3786 -1.6795 43 1 6.5931 4.4447 -2.6355 44 1 0.9295 3.3200 -2.2940 45 1 1.3358 3.8531 -0.6036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950720912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:06 Heat of formation + Delta-G solvation = 180.847348 kcal Electronic energy + Delta-G solvation = -29122.483640 eV Core-core repulsion = 25145.706176 eV Total energy + Delta-G solvation = -3976.777464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.60847 -39.97613 -39.48509 -36.78385 -35.50412 -34.64023 -32.05437 -31.80369 -30.96087 -30.05283 -29.90533 -27.29357 -24.99194 -24.59777 -24.39613 -23.33613 -23.05733 -21.89490 -21.69257 -20.15965 -19.34139 -17.94603 -16.86913 -16.64078 -16.35836 -16.22947 -15.93946 -15.31325 -15.15309 -14.84786 -14.52424 -14.32859 -14.15538 -14.00531 -13.64524 -13.60025 -13.47917 -12.74566 -12.54688 -12.32159 -12.23880 -12.11802 -11.74098 -11.59455 -11.54994 -11.36809 -11.27924 -11.13876 -10.80027 -10.72489 -10.40426 -10.02596 -9.87746 -9.62924 -9.59970 -9.44587 -9.36249 -8.86871 -8.58295 -7.99636 -6.68746 -5.63744 -2.94152 0.11091 0.75204 1.45227 1.69270 1.70449 3.19978 3.25402 3.46687 3.50211 3.51797 3.54306 3.98961 4.06378 4.29793 4.49222 4.52879 4.59322 4.69200 4.78103 4.83568 4.98955 5.11136 5.24941 5.35094 5.41254 5.47552 5.50527 5.63802 5.70197 5.75293 5.81623 5.84197 5.91557 5.97399 6.01679 6.06571 6.18923 6.44945 6.46112 6.50154 6.69460 6.75672 7.04322 7.40497 7.67101 7.68630 7.72537 7.87709 8.10684 8.54778 9.17735 9.83702 10.75549 11.53784 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.002529 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.261303 B =11069.511779 C =12338.687302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -0.585 5.585 4 C 0.593 3.407 5 O -0.510 6.510 6 C -0.080 4.080 7 C 0.089 3.911 8 N -0.314 5.314 9 C 0.138 3.862 10 C -0.106 4.106 11 C -0.099 4.099 12 C -0.118 4.118 13 C -0.095 4.095 14 C -0.125 4.125 15 N -0.067 5.067 16 N -0.191 5.191 17 C 0.089 3.911 18 C 0.156 3.844 19 N -0.605 5.605 20 C -0.213 4.213 21 H 0.079 0.921 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.207 0.793 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.251 0.749 44 H 0.037 0.963 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 -11.396 22.631 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.027 4.027 3 N -0.317 5.317 4 C 0.377 3.623 5 O -0.384 6.384 6 C -0.217 4.217 7 C -0.064 4.064 8 N -0.093 5.093 9 C 0.046 3.954 10 C -0.126 4.126 11 C -0.118 4.118 12 C -0.136 4.136 13 C -0.114 4.114 14 C -0.146 4.146 15 N -0.045 5.045 16 N -0.064 5.064 17 C -0.014 4.014 18 C 0.030 3.970 19 N -0.331 5.331 20 C -0.341 4.341 21 H 0.097 0.903 22 C -0.207 4.207 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.224 0.776 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.253 -11.989 22.406 27.402 hybrid contribution 0.693 1.724 -0.491 1.922 sum -9.559 -10.265 21.914 26.019 Atomic orbital electron populations 1.22052 0.96095 1.01602 1.01693 1.21905 0.94570 0.82519 1.03714 1.47925 1.63286 1.13929 1.06557 1.16726 0.78442 0.85637 0.81480 1.90900 1.46812 1.14625 1.86089 1.21784 1.11823 0.92654 0.95462 1.23392 0.97891 0.96689 0.88380 1.47597 1.43946 1.12127 1.05653 1.17646 1.03276 0.96653 0.77816 1.20983 0.99812 0.98151 0.93674 1.21122 0.98708 0.98310 0.93629 1.21357 0.98398 0.93244 1.00619 1.21065 0.98565 0.99450 0.92281 1.21038 1.01347 0.96183 0.96054 1.82035 1.20383 1.05665 0.96440 1.74800 1.09982 1.12662 1.08995 1.24147 1.00245 0.93484 0.83495 1.22729 0.92246 0.86386 0.95635 1.45690 1.00723 1.37627 1.49043 1.19035 0.91203 1.07463 1.16407 0.90282 1.24776 0.95575 0.99741 1.00642 1.69845 1.00133 1.40678 1.46163 0.86052 0.78349 0.81345 0.80081 1.20534 1.21868 1.21834 1.22933 0.90550 0.91150 0.96843 0.92010 0.92885 0.92826 0.90725 0.88365 0.77633 0.84075 0.84661 0.85062 0.84511 0.84542 0.87582 0.92830 0.91455 0.93872 0.94507 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.73 37.16 0.36 -1.58 16 2 C 0.10 1.32 5.74 -4.04 -0.02 1.30 16 3 N -0.59 -10.13 2.75 -169.12 -0.46 -10.60 16 4 C 0.59 10.75 7.04 -12.48 -0.09 10.67 16 5 O -0.51 -11.04 12.58 5.28 0.07 -10.97 16 6 C -0.08 -1.19 6.54 -83.54 -0.55 -1.74 16 7 C 0.09 1.11 10.61 -16.71 -0.18 0.93 16 8 N -0.31 -3.67 3.82 -10.42 -0.04 -3.71 16 9 C 0.14 1.29 6.70 -83.58 -0.56 0.73 16 10 C -0.11 -0.84 9.68 -39.41 -0.38 -1.22 16 11 C -0.10 -0.56 10.04 -39.61 -0.40 -0.96 16 12 C -0.12 -0.59 10.04 -39.55 -0.40 -0.99 16 13 C -0.09 -0.53 10.04 -39.61 -0.40 -0.93 16 14 C -0.13 -0.93 9.47 -39.40 -0.37 -1.30 16 15 N -0.07 -0.89 13.12 60.35 0.79 -0.09 16 16 N -0.19 -2.70 7.59 32.85 0.25 -2.45 16 17 C 0.09 1.82 4.60 -70.13 -0.32 1.49 16 18 C 0.16 3.98 6.79 -2.83 -0.02 3.96 16 19 N -0.60 -16.68 3.70 -177.85 -0.66 -17.34 16 20 C -0.21 -6.31 10.70 -15.06 -0.16 -6.47 16 21 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.92 -28.54 11.39 55.49 0.63 -27.90 16 24 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 C 0.11 2.55 8.27 -2.97 -0.02 2.53 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.72 7.09 -51.93 -0.37 0.35 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 33 H 0.10 1.35 5.26 -51.93 -0.27 1.07 16 34 H 0.21 2.04 7.13 -52.48 -0.37 1.67 16 35 H 0.14 1.10 7.73 -52.49 -0.41 0.70 16 36 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 37 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 38 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 39 H 0.14 0.85 6.81 -52.49 -0.36 0.49 16 40 H 0.11 1.99 7.90 -51.93 -0.41 1.58 16 41 H 0.05 1.48 5.69 -51.93 -0.30 1.18 16 42 H 0.07 1.86 7.17 -51.93 -0.37 1.49 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 1.19 6.31 -51.93 -0.33 0.86 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -35.98 370.98 -8.13 -44.12 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.68 Total: -0.64 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -3.60 Total: 5.99 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.51 Total: -62.09 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.07 Total: -10.97 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.98 -8.13 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950720912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.966 kcal (2) G-P(sol) polarization free energy of solvation -35.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds