Wall clock time and date at job start Wed Apr 1 2020 00:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46806 * 2 1 4 4 C 1.34781 * 120.00052 * 83.41745 * 3 2 1 5 5 O 1.21594 * 120.00208 * 184.61294 * 4 3 2 6 6 C 1.47511 * 119.99525 * 4.61582 * 4 3 2 7 7 C 1.36625 * 125.76827 * 174.17386 * 6 4 3 8 8 N 1.35075 * 106.79800 * 180.13180 * 7 6 4 9 9 C 1.40221 * 126.61539 * 179.90574 * 8 7 6 10 10 C 1.38823 * 120.06771 * 179.71242 * 9 8 7 11 11 C 1.38125 * 119.93524 * 179.97438 * 10 9 8 12 12 C 1.38279 * 120.06485 * 359.97438 * 11 10 9 13 13 C 1.38277 * 120.13281 * 0.02562 * 12 11 10 14 14 C 1.38122 * 120.06395 * 0.02562 * 13 12 11 15 15 N 1.40210 * 106.77218 * 359.65000 * 8 7 6 16 16 N 1.28755 * 108.38820 * 0.22361 * 15 8 7 17 17 C 1.46495 * 120.00196 * 263.41735 * 3 2 1 18 18 C 1.53954 * 113.74164 * 222.84863 * 17 3 2 19 19 N 1.47817 * 86.03517 * 222.08421 * 18 17 3 20 20 C 1.36935 * 134.45447 * 204.64123 * 19 18 17 21 21 H 1.08002 * 119.99760 * 179.86794 * 20 19 18 22 22 C 1.38812 * 120.00330 * 359.86948 * 20 19 18 23 23 N 1.31626 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00439 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46783 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47066 * 119.99805 * 24 22 20 27 27 H 1.48497 * 109.47415 * 240.00380 * 24 22 20 28 28 C 1.47578 * 91.05259 * 24.54831 * 19 18 17 29 29 H 1.09000 * 109.46554 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46919 * 299.99588 * 1 2 3 31 31 H 1.08998 * 109.47218 * 60.00083 * 1 2 3 32 32 H 1.08999 * 109.46919 * 240.00411 * 2 1 3 33 33 H 1.08997 * 109.47092 * 120.00455 * 2 1 3 34 34 H 1.08003 * 126.59797 * 0.04677 * 7 6 4 35 35 H 1.08002 * 120.03376 * 359.95813 * 10 9 8 36 36 H 1.07994 * 119.96718 * 180.02562 * 11 10 9 37 37 H 1.07995 * 119.93538 * 179.74046 * 12 11 10 38 38 H 1.07998 * 119.96892 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.03195 * 179.97438 * 14 13 12 40 40 H 1.09003 * 112.94781 * 354.43663 * 17 3 2 41 41 H 1.08997 * 113.76449 * 336.34708 * 18 17 3 42 42 H 1.08997 * 113.77002 * 107.74569 * 18 17 3 43 43 H 0.96991 * 120.00350 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.77049 * 221.15365 * 28 19 18 45 45 H 1.09001 * 113.77048 * 89.74865 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1167 2.0612 1.1595 5 8 2.4415 3.2330 1.1516 6 6 1.8305 1.3838 2.4383 7 6 2.0003 1.9219 3.6826 8 7 1.6266 0.9759 4.5713 9 6 1.6371 1.0905 5.9688 10 6 1.2159 0.0281 6.7570 11 6 1.2278 0.1438 8.1333 12 6 1.6592 1.3162 8.7262 13 6 2.0793 2.3761 7.9438 14 6 2.0686 2.2667 6.5670 15 7 1.2207 -0.1408 3.8269 16 7 1.3540 0.1345 2.5762 17 6 2.3995 2.0234 -1.2603 18 6 3.7008 2.8411 -1.1705 19 7 2.9977 3.8568 -1.9823 20 6 3.4006 4.8528 -2.8313 21 1 2.6661 5.4770 -3.3184 22 6 4.7529 5.0601 -3.0659 23 7 5.6481 4.2997 -2.4719 24 14 5.3025 6.4183 -4.2246 25 1 4.1109 7.1249 -4.7594 26 1 6.1590 7.3816 -3.4873 27 1 6.0743 5.8286 -5.3479 28 6 1.6880 3.3651 -1.5124 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3646 2.9126 3.9115 35 1 0.8790 -0.8878 6.2944 36 1 0.9007 -0.6824 8.7469 37 1 1.6637 1.4059 9.8025 38 1 2.4153 3.2907 8.4097 39 1 2.3965 3.0950 5.9564 40 1 2.3669 1.3427 -2.1110 41 1 3.9411 3.1749 -0.1610 42 1 4.5464 2.3786 -1.6795 43 1 6.5931 4.4447 -2.6355 44 1 0.9295 3.3200 -2.2940 45 1 1.3358 3.8531 -0.6036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950720912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:04 Heat of formation + Delta-G solvation = 158.278587 kcal Electronic energy + Delta-G solvation = -29123.462295 eV Core-core repulsion = 25145.706176 eV Total energy + Delta-G solvation = -3977.756119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.61318 -41.37886 -40.19271 -38.54587 -36.80787 -35.58757 -34.13937 -32.54982 -31.78530 -31.26682 -30.80595 -29.21892 -26.55216 -26.25526 -25.30973 -24.65791 -24.18844 -22.89642 -22.53420 -21.69743 -20.50748 -19.01851 -18.74396 -17.86742 -17.39097 -17.31639 -17.01955 -16.77734 -16.19618 -16.08427 -16.01953 -15.66674 -15.29341 -15.07959 -14.75256 -14.46698 -14.45914 -14.11043 -14.09552 -13.69644 -13.51675 -13.33350 -12.98341 -12.90639 -12.77824 -12.67549 -12.54223 -12.47273 -12.26092 -12.08653 -12.00230 -11.86921 -11.55225 -11.44545 -11.05542 -10.69705 -10.61106 -10.08957 -9.59140 -9.49121 -8.86612 -7.88151 -5.21637 -0.64957 0.27024 0.49175 0.73213 0.83356 1.44786 1.47474 1.57738 1.89181 2.15985 2.50488 2.69518 2.99629 3.17337 3.30862 3.52096 3.59496 3.72777 3.85479 3.87052 4.00127 4.09357 4.19857 4.28056 4.32824 4.36105 4.49830 4.52821 4.57594 4.61537 4.71848 4.85427 4.94379 4.96648 5.05212 5.14124 5.24377 5.26418 5.28437 5.33250 5.44200 5.45015 5.47845 5.51530 5.88785 5.89250 5.93871 6.40163 6.71045 6.93100 7.14106 7.61596 8.59301 9.29457 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.002529 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.261303 B =11069.511779 C =12338.687302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.095 3.905 3 N -0.585 5.585 4 C 0.592 3.408 5 O -0.554 6.554 6 C -0.102 4.102 7 C 0.098 3.902 8 N -0.301 5.301 9 C 0.099 3.901 10 C -0.116 4.116 11 C -0.099 4.099 12 C -0.107 4.107 13 C -0.097 4.097 14 C -0.132 4.132 15 N -0.076 5.076 16 N -0.194 5.194 17 C 0.123 3.877 18 C 0.155 3.845 19 N -0.632 5.632 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.071 4.071 23 N -0.954 5.954 24 Si 0.984 3.016 25 H -0.264 1.264 26 H -0.294 1.294 27 H -0.287 1.287 28 C 0.115 3.885 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.226 0.774 35 H 0.136 0.864 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.029 0.971 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.057 0.943 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 -11.968 24.370 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 N -0.316 5.316 4 C 0.379 3.621 5 O -0.432 6.432 6 C -0.240 4.240 7 C -0.057 4.057 8 N -0.079 5.079 9 C 0.008 3.992 10 C -0.136 4.136 11 C -0.117 4.117 12 C -0.125 4.125 13 C -0.115 4.115 14 C -0.152 4.152 15 N -0.055 5.055 16 N -0.067 5.067 17 C 0.019 3.981 18 C 0.029 3.971 19 N -0.359 5.359 20 C -0.360 4.360 21 H 0.102 0.898 22 C -0.264 4.264 23 N -0.603 5.603 24 Si 0.812 3.188 25 H -0.188 1.188 26 H -0.221 1.221 27 H -0.214 1.214 28 C -0.011 4.011 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.242 0.758 35 H 0.154 0.846 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.180 0.820 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.459 -12.620 24.181 29.586 hybrid contribution 1.009 1.872 -0.753 2.256 sum -10.450 -10.748 23.428 27.814 Atomic orbital electron populations 1.21976 0.94778 1.02938 1.00885 1.22141 0.95557 0.80270 1.04779 1.47918 1.63085 1.15220 1.05344 1.17086 0.77312 0.85202 0.82546 1.90869 1.48809 1.16597 1.86894 1.21356 1.14379 0.93524 0.94775 1.23639 0.96851 0.97361 0.87799 1.47702 1.42404 1.11158 1.06616 1.18042 1.06228 0.98339 0.76551 1.21129 1.00028 0.97660 0.94775 1.21464 0.98001 0.99514 0.92749 1.21799 0.96141 0.92351 1.02220 1.21440 0.97887 1.00723 0.91479 1.21276 1.01063 0.95697 0.97176 1.81954 1.20853 1.06440 0.96210 1.74739 1.10197 1.12227 1.09566 1.23556 0.95965 0.93096 0.85481 1.22531 0.93697 0.87288 0.93573 1.46089 1.03040 1.37697 1.49069 1.19459 0.91734 1.08064 1.16701 0.89830 1.25706 0.95624 1.02370 1.02673 1.70055 1.00085 1.42392 1.47814 0.84930 0.78033 0.78144 0.77720 1.18848 1.22134 1.21413 1.22979 0.89496 0.91995 0.96651 0.89568 0.94300 0.92946 0.88821 0.88155 0.75766 0.84622 0.82116 0.81973 0.82049 0.83939 0.85203 0.95368 0.94351 0.94334 0.92453 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.73 71.98 0.70 -2.74 16 2 C 0.09 2.49 5.74 86.38 0.50 2.98 16 3 N -0.58 -20.35 2.75 -807.23 -2.22 -22.57 16 4 C 0.59 22.15 7.04 86.69 0.61 22.76 16 5 O -0.55 -25.16 12.58 -4.01 -0.05 -25.21 16 6 C -0.10 -3.13 6.54 40.82 0.27 -2.87 16 7 C 0.10 2.46 10.61 83.82 0.89 3.35 16 8 N -0.30 -6.99 3.82 -186.89 -0.71 -7.70 16 9 C 0.10 1.78 6.70 38.08 0.25 2.03 16 10 C -0.12 -1.71 9.68 22.38 0.22 -1.49 16 11 C -0.10 -0.86 10.04 22.25 0.22 -0.63 16 12 C -0.11 -0.70 10.04 22.29 0.22 -0.48 16 13 C -0.10 -0.82 10.04 22.25 0.22 -0.60 16 14 C -0.13 -1.77 9.47 22.38 0.21 -1.56 16 15 N -0.08 -2.01 13.12 37.02 0.49 -1.52 16 16 N -0.19 -5.49 7.59 -49.98 -0.38 -5.87 16 17 C 0.12 5.03 4.60 46.75 0.21 5.25 16 18 C 0.16 8.27 6.79 86.44 0.59 8.85 16 19 N -0.63 -35.77 3.70 -716.59 -2.65 -38.43 16 20 C -0.23 -13.93 10.70 84.03 0.90 -13.03 16 21 H 0.08 4.80 7.83 -2.91 -0.02 4.78 16 22 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 23 N -0.95 -61.06 11.39 21.65 0.25 -60.81 16 24 Si 0.98 48.05 29.55 68.60 2.03 50.07 16 25 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 C 0.11 5.28 8.27 86.49 0.72 5.99 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.02 7.09 -2.39 -0.02 1.00 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 2.12 7.86 -2.39 -0.02 2.10 16 33 H 0.10 2.68 5.26 -2.39 -0.01 2.66 16 34 H 0.23 4.54 7.13 -2.91 -0.02 4.52 16 35 H 0.14 2.06 7.73 -2.91 -0.02 2.04 16 36 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.16 0.09 8.06 -2.91 -0.02 0.07 16 38 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.14 1.64 6.81 -2.91 -0.02 1.62 16 40 H 0.13 4.71 7.90 -2.39 -0.02 4.69 16 41 H 0.03 1.66 5.69 -2.39 -0.01 1.64 16 42 H 0.04 2.23 7.17 -2.39 -0.02 2.21 16 43 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.04 1.85 6.31 -2.39 -0.02 1.84 16 Total: -1.00 -81.28 370.98 4.97 -76.31 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.02 Total: 11.73 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 7.20 Total: 23.99 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -5.23 Total: -136.89 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.07 kcal Total: -81.28 4.97 -76.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950720912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.589 kcal (2) G-P(sol) polarization free energy of solvation -81.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds