Wall clock time and date at job start Wed Apr 1 2020 00:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47215 * 2 1 4 4 C 1.34782 * 119.99972 * 97.10682 * 3 2 1 5 5 O 1.21614 * 119.99980 * 186.61613 * 4 3 2 6 6 C 1.47314 * 119.99905 * 6.60947 * 4 3 2 7 7 C 1.37921 * 126.80623 * 331.80990 * 6 4 3 8 8 N 1.34193 * 107.89189 * 179.89061 * 7 6 4 9 9 H 0.96997 * 125.16778 * 180.14406 * 8 7 6 10 10 N 1.39772 * 109.66630 * 0.38463 * 8 7 6 11 11 C 1.31368 * 109.07315 * 359.76100 * 10 8 7 12 12 C 1.48272 * 126.51369 * 180.02562 * 11 10 8 13 13 C 1.39811 * 120.90968 * 144.69157 * 12 11 10 14 14 C 1.37969 * 119.00987 * 179.70295 * 13 12 11 15 15 N 1.31933 * 120.88888 * 0.58414 * 14 13 12 16 16 C 1.31934 * 122.01269 * 359.71619 * 15 14 13 17 17 C 1.37964 * 120.88673 * 359.97122 * 16 15 14 18 18 C 1.46500 * 120.00101 * 277.10489 * 3 2 1 19 19 C 1.53947 * 113.74137 * 220.88815 * 18 3 2 20 20 N 1.47816 * 86.03594 * 222.08394 * 19 18 3 21 21 C 1.36934 * 134.45809 * 204.64411 * 20 19 18 22 22 H 1.08000 * 120.00420 * 179.86604 * 21 20 19 23 23 C 1.38812 * 119.99750 * 359.86542 * 21 20 19 24 24 N 1.31621 * 120.00473 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00070 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47355 * 60.00037 * 25 23 21 27 27 H 1.48502 * 109.47674 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46881 * 300.00276 * 25 23 21 29 29 C 1.47583 * 91.04761 * 24.55077 * 20 19 18 30 30 H 1.08999 * 109.47249 * 300.00180 * 1 2 3 31 31 H 1.08998 * 109.46816 * 59.99461 * 1 2 3 32 32 H 1.08999 * 109.47279 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47249 * 239.99820 * 2 1 3 34 34 H 1.09003 * 109.46987 * 119.99835 * 2 1 3 35 35 H 1.07995 * 126.04934 * 0.02562 * 7 6 4 36 36 H 1.07990 * 120.49318 * 359.97438 * 13 12 11 37 37 H 1.08000 * 119.55885 * 180.27423 * 14 13 12 38 38 H 1.07994 * 119.55458 * 180.02562 * 16 15 14 39 39 H 1.07996 * 120.49087 * 180.02562 * 17 16 15 40 40 H 1.08994 * 112.94549 * 352.47997 * 18 3 2 41 41 H 1.08999 * 113.77080 * 336.34880 * 19 18 3 42 42 H 1.09003 * 113.77205 * 107.74568 * 19 18 3 43 43 H 0.96997 * 120.00529 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.76272 * 221.14807 * 29 20 19 45 45 H 1.08995 * 113.77116 * 89.76024 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3791 1.9684 1.1583 5 8 2.6694 3.1493 1.1768 6 6 2.4217 1.1799 2.4019 7 6 1.6624 0.0683 2.7018 8 7 2.0093 -0.3491 3.9291 9 1 1.6303 -1.1159 4.3864 10 7 2.9961 0.4924 4.4507 11 6 3.2751 1.4250 3.5685 12 6 4.2655 2.5175 3.7230 13 6 5.0106 2.9713 2.6305 14 6 5.9170 3.9945 2.8174 15 7 6.0929 4.5344 4.0082 16 6 5.4149 4.1316 5.0659 17 6 4.4840 3.1182 4.9665 18 6 2.1146 2.1241 -1.2590 19 6 3.3879 2.9812 -1.3771 20 7 2.5093 4.0246 -1.9464 21 6 2.7046 5.0921 -2.7815 22 1 1.8714 5.7214 -3.0575 23 6 3.9736 5.3654 -3.2733 24 7 4.9890 4.5982 -2.9374 25 14 4.2403 6.8220 -4.4120 26 1 3.8485 8.0734 -3.7151 27 1 5.6733 6.8957 -4.7944 28 1 3.4108 6.6546 -5.6324 29 6 1.3372 3.4528 -1.2555 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.9215 -0.3870 2.0614 36 1 4.8753 2.5305 1.6539 37 1 6.4941 4.3549 1.9786 38 1 5.5904 4.6019 6.0220 39 1 3.9323 2.7937 5.8364 40 1 1.9201 1.5042 -2.1341 41 1 3.8261 3.2518 -0.4165 42 1 4.1188 2.5872 -2.0834 43 1 5.8756 4.7890 -3.2814 44 1 0.4336 3.4349 -1.8649 45 1 1.1715 3.8624 -0.2591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950731618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:41 Heat of formation + Delta-G solvation = 165.849269 kcal Electronic energy + Delta-G solvation = -30310.085197 eV Core-core repulsion = 26332.657367 eV Total energy + Delta-G solvation = -3977.427829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.53256 -39.69920 -39.61933 -36.71762 -35.60349 -33.61244 -32.11680 -31.10674 -30.67350 -30.34829 -30.16863 -27.24580 -24.63212 -24.41726 -23.99552 -23.38381 -23.26319 -21.93252 -20.82221 -20.10111 -18.87626 -17.57720 -16.79641 -16.58706 -16.34689 -15.96214 -15.59636 -15.47897 -14.94681 -14.74546 -14.65345 -14.41997 -13.86803 -13.59037 -13.52969 -13.46138 -13.40088 -12.86059 -12.64929 -12.41561 -12.27041 -11.67625 -11.62743 -11.42250 -11.21811 -11.20919 -11.15281 -10.77826 -10.60873 -10.46044 -10.07440 -9.92349 -9.45530 -9.39551 -9.34241 -9.12654 -8.92734 -8.72728 -8.54555 -8.06321 -6.69553 -5.64694 -2.94733 0.92043 1.37077 1.39233 2.27168 2.42413 3.24404 3.47280 3.48967 3.52183 3.53400 4.02029 4.08437 4.36657 4.58294 4.65716 4.77514 4.82142 4.93250 5.06371 5.10582 5.19746 5.25939 5.29404 5.37157 5.38159 5.55170 5.60985 5.69472 5.73385 5.77454 5.84015 5.92670 5.99809 6.08189 6.24533 6.38888 6.41446 6.66444 6.69105 6.82634 6.85708 7.01852 7.23249 7.37679 7.64977 7.68379 7.83767 8.09863 8.15645 8.64574 9.16941 9.83060 10.74246 11.52679 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.004405 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.723093 B = 6354.401644 C = 8758.933136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 N -0.597 5.597 4 C 0.580 3.420 5 O -0.501 6.501 6 C -0.259 4.259 7 C 0.083 3.917 8 N -0.467 5.467 9 H 0.443 0.557 10 N -0.277 5.277 11 C 0.164 3.836 12 C 0.023 3.977 13 C -0.106 4.106 14 C 0.105 3.895 15 N -0.480 5.480 16 C 0.088 3.912 17 C -0.148 4.148 18 C 0.091 3.909 19 C 0.156 3.844 20 N -0.602 5.602 21 C -0.216 4.216 22 H 0.077 0.923 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.113 3.887 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.201 0.799 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.253 0.747 44 H 0.034 0.966 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 -15.865 14.067 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.041 4.041 3 N -0.331 5.331 4 C 0.367 3.633 5 O -0.376 6.376 6 C -0.275 4.275 7 C -0.065 4.065 8 N -0.173 5.173 9 H 0.287 0.713 10 N -0.098 5.098 11 C -0.004 4.004 12 C 0.013 3.987 13 C -0.128 4.128 14 C -0.052 4.052 15 N -0.189 5.189 16 C -0.069 4.069 17 C -0.169 4.169 18 C -0.012 4.012 19 C 0.030 3.970 20 N -0.329 5.329 21 C -0.344 4.344 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.740 3.260 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.014 4.014 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.217 0.783 36 H 0.158 0.842 37 H 0.180 0.820 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.883 -14.796 15.077 21.928 hybrid contribution -1.172 -0.151 -1.295 1.754 sum -7.056 -14.946 13.781 21.520 Atomic orbital electron populations 1.22318 0.96162 1.01896 1.03349 1.22018 0.94185 0.84258 1.03667 1.47947 1.64659 1.13211 1.07247 1.17142 0.77948 0.86508 0.81693 1.90902 1.47204 1.14387 1.85058 1.21543 1.06074 1.01524 0.98325 1.23705 0.99641 0.95267 0.87874 1.45980 1.31859 1.26133 1.13366 0.71276 1.77292 1.06996 1.04648 1.20893 1.21630 0.95009 0.93580 0.90198 1.17920 0.93522 0.93128 0.94136 1.22215 0.94561 0.97057 0.98942 1.22762 0.95656 0.92093 0.94656 1.67636 1.24421 1.27279 0.99599 1.22592 0.92596 0.94164 0.97530 1.22094 0.99882 0.97885 0.97040 1.24073 1.02154 0.91585 0.83366 1.22747 0.91505 0.85203 0.97534 1.45645 1.04011 1.31797 1.51409 1.18924 0.93938 1.03189 1.18368 0.90502 1.24731 0.95430 0.99257 1.00918 1.69805 0.99402 1.39522 1.48005 0.86241 0.76821 0.82432 0.80511 1.21264 1.21596 1.21250 1.22927 0.91745 0.90532 0.96235 0.92402 0.91231 0.91669 0.90329 0.89727 0.78301 0.84184 0.82008 0.82783 0.84839 0.87961 0.92586 0.91634 0.93744 0.94803 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.20 37.16 0.34 -1.03 16 2 C 0.08 0.79 5.65 -4.04 -0.02 0.77 16 3 N -0.60 -8.85 2.73 -169.21 -0.46 -9.31 16 4 C 0.58 9.67 6.19 -12.57 -0.08 9.59 16 5 O -0.50 -10.55 10.26 5.26 0.05 -10.50 16 6 C -0.26 -3.54 5.86 -102.95 -0.60 -4.14 16 7 C 0.08 0.75 9.58 -16.64 -0.16 0.59 16 8 N -0.47 -3.89 7.20 30.81 0.22 -3.66 16 9 H 0.44 1.83 8.96 -182.85 -1.64 0.19 16 10 N -0.28 -3.42 12.65 34.57 0.44 -2.99 16 11 C 0.16 2.37 6.98 -80.56 -0.56 1.81 16 12 C 0.02 0.36 5.68 -104.59 -0.59 -0.24 16 13 C -0.11 -1.78 8.11 -39.09 -0.32 -2.09 16 14 C 0.10 1.73 11.17 -17.61 -0.20 1.54 16 15 N -0.48 -7.74 10.35 -13.35 -0.14 -7.88 16 16 C 0.09 1.19 11.17 -17.61 -0.20 0.99 16 17 C -0.15 -2.00 9.88 -39.09 -0.39 -2.38 16 18 C 0.09 1.71 4.59 -70.14 -0.32 1.38 16 19 C 0.16 3.78 6.77 -2.84 -0.02 3.76 16 20 N -0.60 -16.07 3.70 -177.87 -0.66 -16.73 16 21 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 22 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.92 -27.78 11.39 55.49 0.63 -27.15 16 25 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 C 0.11 2.45 8.28 -2.97 -0.02 2.43 16 30 H 0.06 0.45 7.35 -51.93 -0.38 0.07 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.08 0.66 4.09 -51.93 -0.21 0.45 16 35 H 0.20 1.12 4.15 -52.49 -0.22 0.90 16 36 H 0.14 2.50 6.61 -52.49 -0.35 2.15 16 37 H 0.16 2.54 8.06 -52.49 -0.42 2.12 16 38 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.10 1.76 8.05 -51.93 -0.42 1.34 16 41 H 0.06 1.45 5.61 -51.93 -0.29 1.16 16 42 H 0.07 1.73 7.16 -51.93 -0.37 1.36 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 1.14 6.42 -51.93 -0.33 0.81 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -37.14 365.72 -9.54 -46.68 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.72 Total: 2.06 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -3.40 Total: 6.20 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: 0.03 Total: -67.72 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.05 Total: -10.50 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.14 -9.54 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950731618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.531 kcal (2) G-P(sol) polarization free energy of solvation -37.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds