Wall clock time and date at job start Wed Apr 1 2020 00:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47215 * 2 1 4 4 C 1.34782 * 119.99972 * 97.10682 * 3 2 1 5 5 O 1.21614 * 119.99980 * 186.61613 * 4 3 2 6 6 C 1.47314 * 119.99905 * 6.60947 * 4 3 2 7 7 C 1.37921 * 126.80623 * 331.80990 * 6 4 3 8 8 N 1.34193 * 107.89189 * 179.89061 * 7 6 4 9 9 H 0.96997 * 125.16778 * 180.14406 * 8 7 6 10 10 N 1.39772 * 109.66630 * 0.38463 * 8 7 6 11 11 C 1.31368 * 109.07315 * 359.76100 * 10 8 7 12 12 C 1.48272 * 126.51369 * 180.02562 * 11 10 8 13 13 C 1.39811 * 120.90968 * 144.69157 * 12 11 10 14 14 C 1.37969 * 119.00987 * 179.70295 * 13 12 11 15 15 N 1.31933 * 120.88888 * 0.58414 * 14 13 12 16 16 C 1.31934 * 122.01269 * 359.71619 * 15 14 13 17 17 C 1.37964 * 120.88673 * 359.97122 * 16 15 14 18 18 C 1.46500 * 120.00101 * 277.10489 * 3 2 1 19 19 C 1.53947 * 113.74137 * 220.88815 * 18 3 2 20 20 N 1.47816 * 86.03594 * 222.08394 * 19 18 3 21 21 C 1.36934 * 134.45809 * 204.64411 * 20 19 18 22 22 H 1.08000 * 120.00420 * 179.86604 * 21 20 19 23 23 C 1.38812 * 119.99750 * 359.86542 * 21 20 19 24 24 N 1.31621 * 120.00473 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00070 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47355 * 60.00037 * 25 23 21 27 27 H 1.48502 * 109.47674 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46881 * 300.00276 * 25 23 21 29 29 C 1.47583 * 91.04761 * 24.55077 * 20 19 18 30 30 H 1.08999 * 109.47249 * 300.00180 * 1 2 3 31 31 H 1.08998 * 109.46816 * 59.99461 * 1 2 3 32 32 H 1.08999 * 109.47279 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47249 * 239.99820 * 2 1 3 34 34 H 1.09003 * 109.46987 * 119.99835 * 2 1 3 35 35 H 1.07995 * 126.04934 * 0.02562 * 7 6 4 36 36 H 1.07990 * 120.49318 * 359.97438 * 13 12 11 37 37 H 1.08000 * 119.55885 * 180.27423 * 14 13 12 38 38 H 1.07994 * 119.55458 * 180.02562 * 16 15 14 39 39 H 1.07996 * 120.49087 * 180.02562 * 17 16 15 40 40 H 1.08994 * 112.94549 * 352.47997 * 18 3 2 41 41 H 1.08999 * 113.77080 * 336.34880 * 19 18 3 42 42 H 1.09003 * 113.77205 * 107.74568 * 19 18 3 43 43 H 0.96997 * 120.00529 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.76272 * 221.14807 * 29 20 19 45 45 H 1.08995 * 113.77116 * 89.76024 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3791 1.9684 1.1583 5 8 2.6694 3.1493 1.1768 6 6 2.4217 1.1799 2.4019 7 6 1.6624 0.0683 2.7018 8 7 2.0093 -0.3491 3.9291 9 1 1.6303 -1.1159 4.3864 10 7 2.9961 0.4924 4.4507 11 6 3.2751 1.4250 3.5685 12 6 4.2655 2.5175 3.7230 13 6 5.0106 2.9713 2.6305 14 6 5.9170 3.9945 2.8174 15 7 6.0929 4.5344 4.0082 16 6 5.4149 4.1316 5.0659 17 6 4.4840 3.1182 4.9665 18 6 2.1146 2.1241 -1.2590 19 6 3.3879 2.9812 -1.3771 20 7 2.5093 4.0246 -1.9464 21 6 2.7046 5.0921 -2.7815 22 1 1.8714 5.7214 -3.0575 23 6 3.9736 5.3654 -3.2733 24 7 4.9890 4.5982 -2.9374 25 14 4.2403 6.8220 -4.4120 26 1 3.8485 8.0734 -3.7151 27 1 5.6733 6.8957 -4.7944 28 1 3.4108 6.6546 -5.6324 29 6 1.3372 3.4528 -1.2555 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.9215 -0.3870 2.0614 36 1 4.8753 2.5305 1.6539 37 1 6.4941 4.3549 1.9786 38 1 5.5904 4.6019 6.0220 39 1 3.9323 2.7937 5.8364 40 1 1.9201 1.5042 -2.1341 41 1 3.8261 3.2518 -0.4165 42 1 4.1188 2.5872 -2.0834 43 1 5.8756 4.7890 -3.2814 44 1 0.4336 3.4349 -1.8649 45 1 1.1715 3.8624 -0.2591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950731618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:39 Heat of formation + Delta-G solvation = 138.885045 kcal Electronic energy + Delta-G solvation = -30311.254453 eV Core-core repulsion = 26332.657367 eV Total energy + Delta-G solvation = -3978.597086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.50891 -41.02847 -40.79836 -38.37088 -36.76387 -34.68692 -34.17083 -32.27950 -31.73355 -31.46475 -31.14091 -29.13555 -26.50327 -25.74161 -25.24619 -24.61687 -24.33114 -22.99049 -22.19634 -21.30576 -20.15500 -18.71886 -18.59688 -17.74900 -17.53865 -17.13515 -17.00433 -16.82233 -16.54986 -16.11232 -15.68709 -15.60929 -15.47837 -14.93934 -14.73932 -14.63402 -14.41598 -14.23604 -14.02298 -13.67258 -13.43748 -13.31322 -12.92669 -12.78332 -12.71345 -12.63859 -12.46960 -12.18864 -12.05104 -11.90791 -11.79643 -11.44542 -11.41309 -10.97806 -10.57106 -10.50496 -10.16889 -10.09168 -9.74619 -9.39192 -8.81664 -7.86231 -5.18482 -0.21194 0.19125 0.52496 1.17619 1.43950 1.48785 1.54435 1.64000 2.05233 2.33369 2.52388 2.85799 3.10468 3.32996 3.48934 3.52966 3.57425 3.82818 3.90806 3.96749 4.04959 4.10384 4.14950 4.21908 4.33092 4.36382 4.45139 4.62315 4.63284 4.68803 4.74726 4.84999 4.90151 4.98482 5.01954 5.10676 5.13388 5.25650 5.29630 5.39188 5.49654 5.55692 5.69197 5.95635 5.99456 6.16062 6.35932 6.64277 6.95773 6.96535 7.41939 7.64473 8.62796 9.30673 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.004405 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.723093 B = 6354.401644 C = 8758.933136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 N -0.595 5.595 4 C 0.577 3.423 5 O -0.557 6.557 6 C -0.297 4.297 7 C 0.126 3.874 8 N -0.439 5.439 9 H 0.466 0.534 10 N -0.282 5.282 11 C 0.143 3.857 12 C 0.015 3.985 13 C -0.122 4.122 14 C 0.085 3.915 15 N -0.501 5.501 16 C 0.091 3.909 17 C -0.142 4.142 18 C 0.131 3.869 19 C 0.154 3.846 20 N -0.632 5.632 21 C -0.235 4.235 22 H 0.079 0.921 23 C -0.065 4.065 24 N -0.950 5.950 25 Si 0.977 3.023 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.270 1.270 29 C 0.115 3.885 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.242 0.758 36 H 0.116 0.884 37 H 0.153 0.847 38 H 0.194 0.806 39 H 0.162 0.838 40 H 0.126 0.874 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.247 0.753 44 H 0.053 0.947 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 -18.666 15.526 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.047 4.047 3 N -0.327 5.327 4 C 0.366 3.634 5 O -0.436 6.436 6 C -0.312 4.312 7 C -0.024 4.024 8 N -0.148 5.148 9 H 0.315 0.685 10 N -0.105 5.105 11 C -0.025 4.025 12 C 0.005 3.995 13 C -0.144 4.144 14 C -0.071 4.071 15 N -0.211 5.211 16 C -0.066 4.066 17 C -0.163 4.163 18 C 0.026 3.974 19 C 0.028 3.972 20 N -0.359 5.359 21 C -0.364 4.364 22 H 0.097 0.903 23 C -0.258 4.258 24 N -0.599 5.599 25 Si 0.805 3.195 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.196 1.196 29 C -0.011 4.011 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.258 0.742 36 H 0.134 0.866 37 H 0.170 0.830 38 H 0.211 0.789 39 H 0.179 0.821 40 H 0.144 0.856 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.645 -17.684 16.569 25.730 hybrid contribution -0.418 0.608 -1.608 1.769 sum -9.063 -17.077 14.962 24.446 Atomic orbital electron populations 1.22309 0.94019 1.04287 1.02713 1.22431 0.95805 0.80952 1.05490 1.47891 1.64521 1.15068 1.05243 1.17622 0.76689 0.86122 0.82923 1.90874 1.49543 1.17114 1.86069 1.21294 1.08809 1.03801 0.97334 1.24091 0.97897 0.92718 0.87688 1.46028 1.30052 1.25697 1.13005 0.68453 1.77232 1.07938 1.04616 1.20664 1.21549 0.95628 0.94156 0.91179 1.18173 0.93375 0.93701 0.94251 1.22006 0.95843 0.97867 0.98680 1.22683 0.96388 0.92824 0.95161 1.67653 1.25601 1.27912 0.99885 1.23264 0.91527 0.93755 0.98087 1.22413 0.99573 0.97199 0.97126 1.23326 0.96949 0.91110 0.86008 1.22563 0.93014 0.86433 0.95195 1.46069 1.06401 1.31814 1.51576 1.19343 0.94287 1.04082 1.18650 0.90278 1.25596 0.95183 1.02113 1.02869 1.70020 0.99449 1.41139 1.49312 0.85178 0.76529 0.78913 0.78861 1.21029 1.21826 1.19609 1.22958 0.91390 0.91733 0.95002 0.92249 0.92820 0.87659 0.89041 0.87455 0.74232 0.86594 0.82983 0.78918 0.82061 0.85590 0.95054 0.94838 0.94373 0.92887 0.94974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.20 71.98 0.66 -1.22 16 2 C 0.07 1.16 5.65 86.38 0.49 1.64 16 3 N -0.60 -17.18 2.73 -807.50 -2.21 -19.39 16 4 C 0.58 19.55 6.19 86.63 0.54 20.09 16 5 O -0.56 -25.09 10.26 -4.08 -0.04 -25.13 16 6 C -0.30 -7.73 5.86 -18.78 -0.11 -7.84 16 7 C 0.13 1.74 9.58 84.26 0.81 2.55 16 8 N -0.44 -5.37 7.20 -56.43 -0.41 -5.77 16 9 H 0.47 1.31 8.96 -213.53 -1.91 -0.60 16 10 N -0.28 -6.23 12.65 -44.53 -0.56 -6.80 16 11 C 0.14 4.00 6.98 44.07 0.31 4.31 16 12 C 0.02 0.48 5.68 -19.85 -0.11 0.37 16 13 C -0.12 -4.50 8.11 22.59 0.18 -4.31 16 14 C 0.08 3.10 11.17 84.61 0.95 4.05 16 15 N -0.50 -16.91 10.35 -196.13 -2.03 -18.94 16 16 C 0.09 2.41 11.17 84.61 0.95 3.36 16 17 C -0.14 -3.76 9.88 22.59 0.22 -3.53 16 18 C 0.13 4.92 4.59 46.75 0.21 5.14 16 19 C 0.15 7.93 6.77 86.44 0.59 8.52 16 20 N -0.63 -35.18 3.70 -716.66 -2.65 -37.83 16 21 C -0.24 -14.15 10.70 84.03 0.90 -13.25 16 22 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 23 C -0.06 -3.89 5.50 84.86 0.47 -3.43 16 24 N -0.95 -60.38 11.39 21.65 0.25 -60.14 16 25 Si 0.98 48.24 29.55 68.60 2.03 50.27 16 26 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 28 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 29 C 0.12 5.13 8.28 86.48 0.72 5.84 16 30 H 0.06 0.65 7.35 -2.39 -0.02 0.63 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.11 1.16 4.09 -2.39 -0.01 1.15 16 35 H 0.24 1.21 4.15 -2.91 -0.01 1.20 16 36 H 0.12 4.73 6.61 -2.92 -0.02 4.71 16 37 H 0.15 5.56 8.06 -2.91 -0.02 5.54 16 38 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.13 4.17 8.05 -2.39 -0.02 4.15 16 41 H 0.03 1.79 5.61 -2.39 -0.01 1.78 16 42 H 0.03 1.90 7.16 -2.39 -0.02 1.88 16 43 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.03 1.57 6.42 -2.39 -0.02 1.55 16 Total: -1.00 -89.15 365.72 1.27 -87.88 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -0.86 Total: 13.56 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 7.76 Total: 22.28 kcal Atomic # 7 Polarization: -141.25 SS G_CDS: -7.61 Total: -148.86 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.04 Total: -25.13 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -89.15 1.27 -87.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950731618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.768 kcal (2) G-P(sol) polarization free energy of solvation -89.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds