Wall clock time and date at job start Wed Apr 1 2020 00:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47131 * 2 1 4 4 C 1.34782 * 119.99933 * 83.59821 * 3 2 1 5 5 O 1.21576 * 119.99597 * 184.73025 * 4 3 2 6 6 C 1.47687 * 119.99815 * 4.73501 * 4 3 2 7 7 C 1.41565 * 126.43821 * 174.17579 * 6 4 3 8 8 C 1.35323 * 105.55977 * 180.02562 * 7 6 4 9 9 N 1.35905 * 107.11557 * 0.22069 * 8 7 6 10 10 C 1.39912 * 124.96847 * 179.75647 * 9 8 7 11 11 C 1.39327 * 120.85065 * 359.71989 * 10 9 8 12 12 C 1.38028 * 119.07819 * 179.75403 * 11 10 9 13 13 N 1.31929 * 120.82882 * 0.53747 * 12 11 10 14 14 C 1.31933 * 121.88942 * 359.73756 * 13 12 11 15 15 C 1.38018 * 120.83210 * 359.97438 * 14 13 12 16 16 N 1.28486 * 110.07087 * 359.61772 * 9 8 7 17 17 C 1.46502 * 120.00111 * 263.60466 * 3 2 1 18 18 C 1.53950 * 113.73857 * 222.83110 * 17 3 2 19 19 N 1.47815 * 86.03469 * 222.08087 * 18 17 3 20 20 C 1.36935 * 134.45390 * 204.64192 * 19 18 17 21 21 H 1.07998 * 119.99999 * 184.83297 * 20 19 18 22 22 C 1.38814 * 119.99993 * 4.84109 * 20 19 18 23 23 N 1.31615 * 120.00253 * 5.04300 * 22 20 19 24 24 Si 1.86806 * 119.99526 * 185.04679 * 22 20 19 25 25 H 1.48495 * 109.47072 * 95.00002 * 24 22 20 26 26 H 1.48501 * 109.46771 * 214.99603 * 24 22 20 27 27 H 1.48501 * 109.47503 * 334.99429 * 24 22 20 28 28 C 1.47577 * 91.04839 * 24.55166 * 19 18 17 29 29 H 1.08999 * 109.46959 * 299.99715 * 1 2 3 30 30 H 1.09000 * 109.47488 * 59.99761 * 1 2 3 31 31 H 1.09004 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46725 * 239.99834 * 2 1 3 33 33 H 1.08998 * 109.46818 * 120.00572 * 2 1 3 34 34 H 1.08000 * 127.21953 * 359.97438 * 7 6 4 35 35 H 1.08002 * 126.44054 * 179.97438 * 8 7 6 36 36 H 1.07995 * 120.46651 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.58331 * 180.27604 * 12 11 10 38 38 H 1.08001 * 119.58640 * 179.97438 * 14 13 12 39 39 H 1.07996 * 120.45887 * 180.02562 * 15 14 13 40 40 H 1.09001 * 112.94429 * 354.42193 * 17 3 2 41 41 H 1.08994 * 113.77542 * 336.34753 * 18 17 3 42 42 H 1.09005 * 113.76851 * 107.74337 * 18 17 3 43 43 H 0.97002 * 119.99943 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.76328 * 221.14577 * 28 19 18 45 45 H 1.08996 * 113.77133 * 89.75614 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1203 2.0599 1.1600 5 8 2.4430 3.2320 1.1520 6 6 1.8401 1.3797 2.4406 7 6 2.0147 1.9219 3.7365 8 6 1.6339 0.9458 4.5928 9 7 1.2578 -0.1219 3.8406 10 6 0.8006 -1.3415 4.3515 11 6 0.7030 -1.5489 5.7257 12 6 0.2425 -2.7646 6.1896 13 7 -0.0926 -3.7256 5.3502 14 6 -0.0090 -3.5696 4.0428 15 6 0.4366 -2.3818 3.4992 16 7 1.3809 0.1535 2.5917 17 6 2.3958 2.0247 -1.2608 18 6 3.6971 2.8425 -1.1739 19 7 2.9915 3.8588 -1.9827 20 6 3.3917 4.8557 -2.8319 21 1 2.6621 5.5312 -3.2536 22 6 4.7352 4.9980 -3.1510 23 7 5.6114 4.1165 -2.7179 24 14 5.2995 6.4407 -4.1949 25 1 5.7577 7.5422 -3.3108 26 1 6.4193 6.0102 -5.0702 27 1 4.1702 6.9164 -5.0339 28 6 1.6833 3.3664 -1.5095 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3769 2.9076 3.9889 35 1 1.6331 1.0028 5.6714 36 1 0.9797 -0.7679 6.4184 37 1 0.1594 -2.9326 7.2532 38 1 -0.2928 -4.3815 3.3897 39 1 0.5023 -2.2605 2.4281 40 1 2.3607 1.3448 -2.1121 41 1 3.9404 3.1754 -0.1650 42 1 4.5414 2.3806 -1.6859 43 1 6.5502 4.2162 -2.9405 44 1 0.9225 3.3221 -2.2889 45 1 1.3336 3.8535 -0.5993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950844598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:25 Heat of formation + Delta-G solvation = 178.021964 kcal Electronic energy + Delta-G solvation = -29420.591142 eV Core-core repulsion = 25443.691160 eV Total energy + Delta-G solvation = -3976.899982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.21248 -40.51876 -39.77824 -36.81815 -35.39223 -34.63627 -32.17300 -32.00177 -30.92940 -30.51631 -29.98275 -27.39221 -25.40530 -24.60453 -24.39342 -23.52903 -23.14438 -21.84019 -21.52466 -20.05637 -19.03543 -18.41792 -16.90091 -16.59068 -16.48981 -16.38904 -16.38101 -15.53869 -15.45921 -14.92732 -14.57968 -14.31497 -14.18239 -14.09120 -14.00006 -13.64348 -13.52686 -13.22689 -12.79787 -12.37294 -12.29560 -12.18017 -11.65130 -11.40279 -11.34630 -11.24446 -11.01562 -10.78842 -10.74064 -10.43173 -10.16697 -10.02984 -9.87184 -9.81532 -9.56110 -9.44609 -9.35760 -8.96207 -8.60380 -8.02648 -6.68573 -5.63677 -2.95816 0.17145 0.51285 1.71203 1.91804 2.00443 3.25994 3.27096 3.47022 3.51950 3.53486 3.58210 3.83858 3.89051 4.15824 4.37165 4.47501 4.55234 4.58605 4.78700 4.94723 5.12640 5.17937 5.21274 5.33818 5.35561 5.41698 5.48384 5.52591 5.59507 5.64108 5.77621 5.84464 5.93011 5.96993 6.01298 6.14953 6.33427 6.43863 6.55242 6.68895 6.73722 7.01714 7.38445 7.42045 7.55224 7.67600 7.68602 7.84447 8.11148 8.55466 9.16499 9.83134 10.74701 11.52253 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.002401 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.101141 B =11658.627207 C =12156.851321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.587 5.587 4 C 0.590 3.410 5 O -0.502 6.502 6 C 0.020 3.980 7 C -0.163 4.163 8 C -0.017 4.017 9 N -0.253 5.253 10 C 0.194 3.806 11 C -0.188 4.188 12 C 0.126 3.874 13 N -0.491 5.491 14 C 0.124 3.876 15 C -0.168 4.168 16 N -0.254 5.254 17 C 0.091 3.909 18 C 0.148 3.852 19 N -0.604 5.604 20 C -0.214 4.214 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.112 3.888 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.106 0.894 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.178 -17.365 18.536 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.026 4.026 3 N -0.319 5.319 4 C 0.374 3.626 5 O -0.374 6.374 6 C -0.143 4.143 7 C -0.190 4.190 8 C -0.155 4.155 9 N -0.034 5.034 10 C 0.094 3.906 11 C -0.211 4.211 12 C -0.032 4.032 13 N -0.200 5.200 14 C -0.032 4.032 15 C -0.190 4.190 16 N -0.085 5.085 17 C -0.012 4.012 18 C 0.022 3.978 19 N -0.330 5.330 20 C -0.341 4.341 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.189 0.811 35 H 0.202 0.798 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.185 0.815 39 H 0.171 0.829 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.411 -18.298 18.058 28.547 hybrid contribution 0.890 2.339 -0.302 2.521 sum -11.521 -15.959 17.756 26.508 Atomic orbital electron populations 1.22078 0.96187 1.01365 1.01982 1.21858 0.94424 0.82880 1.03464 1.47999 1.63423 1.13817 1.06703 1.16889 0.78558 0.85772 0.81354 1.90893 1.46076 1.14618 1.85848 1.22541 1.04364 0.91170 0.96200 1.21948 1.05301 1.01375 0.90411 1.23032 1.05637 0.87392 0.99440 1.42868 1.46279 1.10141 1.04120 1.17912 0.96103 0.83622 0.92972 1.21923 1.05024 1.01066 0.93092 1.22700 0.92618 0.87528 1.00316 1.67719 1.15477 1.32583 1.04252 1.22803 0.93369 0.95698 0.91365 1.22052 1.01681 0.93060 1.02191 1.73840 1.19299 1.17112 0.98295 1.24145 1.00216 0.93435 0.83401 1.22839 0.92788 0.86732 0.95459 1.45614 1.00676 1.37858 1.48823 1.18991 0.92083 1.05335 1.17739 0.90390 1.24769 0.95804 0.99076 1.01039 1.69829 1.01555 1.35578 1.49728 0.86103 0.78147 0.82016 0.79542 1.21747 1.21795 1.20624 1.22943 0.90559 0.91088 0.96864 0.92821 0.92639 0.92260 0.90709 0.88663 0.81118 0.79766 0.83689 0.81593 0.81524 0.82878 0.87613 0.93108 0.90660 0.93830 0.94536 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.77 37.16 0.36 -1.43 16 2 C 0.10 1.25 5.74 -4.05 -0.02 1.23 16 3 N -0.59 -10.01 2.75 -169.07 -0.46 -10.47 16 4 C 0.59 10.78 7.05 -12.40 -0.09 10.70 16 5 O -0.50 -11.18 12.64 5.30 0.07 -11.11 16 6 C 0.02 0.30 6.67 -82.75 -0.55 -0.25 16 7 C -0.16 -2.00 10.80 -39.35 -0.43 -2.43 16 8 C -0.02 -0.16 10.82 -16.79 -0.18 -0.34 16 9 N -0.25 -2.61 3.51 -10.37 -0.04 -2.65 16 10 C 0.19 1.63 6.70 -83.36 -0.56 1.07 16 11 C -0.19 -1.13 9.50 -39.25 -0.37 -1.50 16 12 C 0.13 0.73 11.18 -17.59 -0.20 0.54 16 13 N -0.49 -3.76 10.36 -13.32 -0.14 -3.90 16 14 C 0.12 0.83 11.17 -17.59 -0.20 0.63 16 15 C -0.17 -1.28 9.67 -39.26 -0.38 -1.66 16 16 N -0.25 -3.16 6.63 33.43 0.22 -2.94 16 17 C 0.09 1.85 4.60 -70.14 -0.32 1.53 16 18 C 0.15 3.79 6.99 -2.83 -0.02 3.77 16 19 N -0.60 -16.72 3.70 -177.88 -0.66 -17.38 16 20 C -0.21 -6.35 10.69 -15.06 -0.16 -6.51 16 21 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 23 N -0.92 -28.45 11.29 55.49 0.63 -27.83 16 24 Si 0.91 23.09 29.56 -169.99 -5.02 18.07 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.11 2.57 8.27 -2.97 -0.02 2.55 16 29 H 0.05 0.68 7.16 -51.93 -0.37 0.30 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.87 7.86 -51.93 -0.41 0.47 16 33 H 0.10 1.19 5.29 -51.93 -0.27 0.91 16 34 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.19 0.91 7.04 -52.49 -0.37 0.54 16 36 H 0.15 0.50 6.78 -52.49 -0.36 0.14 16 37 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 38 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.15 1.11 7.74 -52.49 -0.41 0.71 16 40 H 0.11 1.99 7.90 -51.93 -0.41 1.58 16 41 H 0.05 1.40 5.70 -51.93 -0.30 1.11 16 42 H 0.08 2.10 6.87 -51.93 -0.36 1.74 16 43 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 1.20 6.31 -51.93 -0.33 0.88 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -36.95 370.27 -8.72 -45.67 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.66 Total: -0.52 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -3.23 Total: 7.48 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -0.45 Total: -65.16 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.11 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.95 -8.72 -45.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950844598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.694 kcal (2) G-P(sol) polarization free energy of solvation -36.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds