Wall clock time and date at job start Wed Apr 1 2020 00:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47131 * 2 1 4 4 C 1.34782 * 119.99933 * 83.59821 * 3 2 1 5 5 O 1.21576 * 119.99597 * 184.73025 * 4 3 2 6 6 C 1.47687 * 119.99815 * 4.73501 * 4 3 2 7 7 C 1.41565 * 126.43821 * 174.17579 * 6 4 3 8 8 C 1.35323 * 105.55977 * 180.02562 * 7 6 4 9 9 N 1.35905 * 107.11557 * 0.22069 * 8 7 6 10 10 C 1.39912 * 124.96847 * 179.75647 * 9 8 7 11 11 C 1.39327 * 120.85065 * 359.71989 * 10 9 8 12 12 C 1.38028 * 119.07819 * 179.75403 * 11 10 9 13 13 N 1.31929 * 120.82882 * 0.53747 * 12 11 10 14 14 C 1.31933 * 121.88942 * 359.73756 * 13 12 11 15 15 C 1.38018 * 120.83210 * 359.97438 * 14 13 12 16 16 N 1.28486 * 110.07087 * 359.61772 * 9 8 7 17 17 C 1.46502 * 120.00111 * 263.60466 * 3 2 1 18 18 C 1.53950 * 113.73857 * 222.83110 * 17 3 2 19 19 N 1.47815 * 86.03469 * 222.08087 * 18 17 3 20 20 C 1.36935 * 134.45390 * 204.64192 * 19 18 17 21 21 H 1.07998 * 119.99999 * 184.83297 * 20 19 18 22 22 C 1.38814 * 119.99993 * 4.84109 * 20 19 18 23 23 N 1.31615 * 120.00253 * 5.04300 * 22 20 19 24 24 Si 1.86806 * 119.99526 * 185.04679 * 22 20 19 25 25 H 1.48495 * 109.47072 * 95.00002 * 24 22 20 26 26 H 1.48501 * 109.46771 * 214.99603 * 24 22 20 27 27 H 1.48501 * 109.47503 * 334.99429 * 24 22 20 28 28 C 1.47577 * 91.04839 * 24.55166 * 19 18 17 29 29 H 1.08999 * 109.46959 * 299.99715 * 1 2 3 30 30 H 1.09000 * 109.47488 * 59.99761 * 1 2 3 31 31 H 1.09004 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46725 * 239.99834 * 2 1 3 33 33 H 1.08998 * 109.46818 * 120.00572 * 2 1 3 34 34 H 1.08000 * 127.21953 * 359.97438 * 7 6 4 35 35 H 1.08002 * 126.44054 * 179.97438 * 8 7 6 36 36 H 1.07995 * 120.46651 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.58331 * 180.27604 * 12 11 10 38 38 H 1.08001 * 119.58640 * 179.97438 * 14 13 12 39 39 H 1.07996 * 120.45887 * 180.02562 * 15 14 13 40 40 H 1.09001 * 112.94429 * 354.42193 * 17 3 2 41 41 H 1.08994 * 113.77542 * 336.34753 * 18 17 3 42 42 H 1.09005 * 113.76851 * 107.74337 * 18 17 3 43 43 H 0.97002 * 119.99943 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.76328 * 221.14577 * 28 19 18 45 45 H 1.08996 * 113.77133 * 89.75614 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1203 2.0599 1.1600 5 8 2.4430 3.2320 1.1520 6 6 1.8401 1.3797 2.4406 7 6 2.0147 1.9219 3.7365 8 6 1.6339 0.9458 4.5928 9 7 1.2578 -0.1219 3.8406 10 6 0.8006 -1.3415 4.3515 11 6 0.7030 -1.5489 5.7257 12 6 0.2425 -2.7646 6.1896 13 7 -0.0926 -3.7256 5.3502 14 6 -0.0090 -3.5696 4.0428 15 6 0.4366 -2.3818 3.4992 16 7 1.3809 0.1535 2.5917 17 6 2.3958 2.0247 -1.2608 18 6 3.6971 2.8425 -1.1739 19 7 2.9915 3.8588 -1.9827 20 6 3.3917 4.8557 -2.8319 21 1 2.6621 5.5312 -3.2536 22 6 4.7352 4.9980 -3.1510 23 7 5.6114 4.1165 -2.7179 24 14 5.2995 6.4407 -4.1949 25 1 5.7577 7.5422 -3.3108 26 1 6.4193 6.0102 -5.0702 27 1 4.1702 6.9164 -5.0339 28 6 1.6833 3.3664 -1.5095 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3769 2.9076 3.9889 35 1 1.6331 1.0028 5.6714 36 1 0.9797 -0.7679 6.4184 37 1 0.1594 -2.9326 7.2532 38 1 -0.2928 -4.3815 3.3897 39 1 0.5023 -2.2605 2.4281 40 1 2.3607 1.3448 -2.1121 41 1 3.9404 3.1754 -0.1650 42 1 4.5414 2.3806 -1.6859 43 1 6.5502 4.2162 -2.9405 44 1 0.9225 3.3221 -2.2889 45 1 1.3336 3.8535 -0.5993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950844598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:24 Heat of formation + Delta-G solvation = 153.746184 kcal Electronic energy + Delta-G solvation = -29421.643819 eV Core-core repulsion = 25443.691160 eV Total energy + Delta-G solvation = -3977.952659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.07288 -41.45839 -40.89908 -38.57742 -36.75351 -35.40838 -34.15439 -32.71355 -31.68330 -31.38811 -31.22723 -29.30278 -26.61816 -26.57553 -25.07607 -24.75620 -24.34921 -22.93298 -22.29103 -21.65113 -20.02208 -19.48463 -18.78154 -17.97642 -17.36208 -17.16305 -17.08135 -16.87530 -16.72978 -16.20087 -16.08677 -15.69237 -15.22494 -15.02794 -14.81125 -14.70475 -14.49990 -14.37891 -14.13431 -14.10123 -13.67617 -13.43509 -12.98417 -12.86025 -12.78291 -12.74115 -12.51194 -12.31393 -12.03807 -11.90893 -11.77991 -11.56687 -11.45257 -11.09714 -10.71095 -10.62790 -10.34045 -10.25476 -9.81150 -9.50364 -8.88067 -7.89127 -5.24743 -0.47838 0.06352 0.67349 1.15203 1.22662 1.42971 1.47047 1.55660 1.95091 2.28505 2.48900 2.77962 3.04076 3.27495 3.49287 3.51716 3.57708 3.62486 3.83700 3.87999 3.97803 4.08700 4.16154 4.25999 4.45858 4.48293 4.49354 4.57538 4.59760 4.67506 4.68907 4.81554 4.81938 4.87387 4.95471 5.00893 5.04526 5.20475 5.25027 5.32401 5.40700 5.49188 5.50935 5.82392 5.87842 5.92931 6.41005 6.68708 6.90396 6.92174 7.17110 7.59360 8.57072 9.26591 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027907 B = 0.002401 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.101141 B =11658.627207 C =12156.851321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.095 3.905 3 N -0.586 5.586 4 C 0.586 3.414 5 O -0.556 6.556 6 C -0.014 4.014 7 C -0.190 4.190 8 C 0.009 3.991 9 N -0.245 5.245 10 C 0.163 3.837 11 C -0.175 4.175 12 C 0.123 3.877 13 N -0.510 5.510 14 C 0.121 3.879 15 C -0.174 4.174 16 N -0.249 5.249 17 C 0.125 3.875 18 C 0.147 3.853 19 N -0.632 5.632 20 C -0.234 4.234 21 H 0.082 0.918 22 C -0.070 4.070 23 N -0.952 5.952 24 Si 0.984 3.016 25 H -0.291 1.291 26 H -0.289 1.289 27 H -0.264 1.264 28 C 0.115 3.885 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.168 0.832 35 H 0.234 0.766 36 H 0.176 0.824 37 H 0.198 0.802 38 H 0.189 0.811 39 H 0.153 0.847 40 H 0.129 0.871 41 H 0.024 0.976 42 H 0.047 0.953 43 H 0.248 0.752 44 H 0.056 0.944 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.796 -19.390 20.152 31.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 N -0.318 5.318 4 C 0.373 3.627 5 O -0.432 6.432 6 C -0.175 4.175 7 C -0.217 4.217 8 C -0.129 4.129 9 N -0.027 5.027 10 C 0.064 3.936 11 C -0.197 4.197 12 C -0.033 4.033 13 N -0.220 5.220 14 C -0.035 4.035 15 C -0.196 4.196 16 N -0.083 5.083 17 C 0.021 3.979 18 C 0.020 3.980 19 N -0.358 5.358 20 C -0.362 4.362 21 H 0.100 0.900 22 C -0.263 4.263 23 N -0.600 5.600 24 Si 0.811 3.189 25 H -0.219 1.219 26 H -0.215 1.215 27 H -0.188 1.188 28 C -0.011 4.011 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.186 0.814 35 H 0.250 0.750 36 H 0.193 0.807 37 H 0.214 0.786 38 H 0.205 0.795 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.085 -20.385 19.683 31.644 hybrid contribution 1.304 2.799 -0.607 3.148 sum -12.781 -17.585 19.076 28.922 Atomic orbital electron populations 1.21992 0.94656 1.03059 1.00914 1.22131 0.95572 0.80322 1.04652 1.47993 1.63195 1.15297 1.05304 1.17396 0.77275 0.85337 0.82711 1.90850 1.48479 1.17022 1.86860 1.22018 1.07639 0.92597 0.95243 1.22076 1.07036 1.02422 0.90148 1.23624 1.02691 0.85575 1.01059 1.43094 1.44997 1.11031 1.03609 1.18287 0.97974 0.83046 0.94300 1.22269 1.03350 1.01812 0.92317 1.23263 0.91539 0.86975 1.01573 1.67771 1.15830 1.33568 1.04806 1.23136 0.92919 0.95937 0.91508 1.22168 1.01729 0.93364 1.02295 1.73705 1.18905 1.15857 0.99789 1.23506 0.95838 0.92996 0.85543 1.22634 0.94331 0.87678 0.93314 1.46018 1.02986 1.37984 1.48819 1.19414 0.92673 1.06112 1.18050 0.90025 1.25710 0.95844 1.01936 1.02765 1.70040 1.01507 1.37324 1.51163 0.84983 0.77879 0.78214 0.77786 1.21866 1.21506 1.18812 1.22972 0.89529 0.92072 0.96534 0.94256 0.93273 0.89113 0.89013 0.87984 0.81429 0.74986 0.80705 0.78571 0.79461 0.82963 0.85345 0.95779 0.93523 0.94258 0.92543 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.77 71.98 0.70 -2.41 16 2 C 0.10 2.34 5.74 86.38 0.50 2.84 16 3 N -0.59 -20.39 2.75 -807.07 -2.22 -22.61 16 4 C 0.59 22.48 7.05 86.74 0.61 23.09 16 5 O -0.56 -26.59 12.64 -3.96 -0.05 -26.64 16 6 C -0.01 -0.42 6.67 42.47 0.28 -0.14 16 7 C -0.19 -4.64 10.80 22.42 0.24 -4.40 16 8 C 0.01 0.14 10.82 83.39 0.90 1.05 16 9 N -0.25 -4.54 3.51 -186.73 -0.66 -5.20 16 10 C 0.16 2.28 6.70 38.37 0.26 2.53 16 11 C -0.18 -1.41 9.50 22.48 0.21 -1.19 16 12 C 0.12 0.98 11.18 84.63 0.95 1.92 16 13 N -0.51 -6.34 10.36 -196.05 -2.03 -8.37 16 14 C 0.12 1.32 11.17 84.63 0.95 2.26 16 15 C -0.17 -2.26 9.67 22.48 0.22 -2.04 16 16 N -0.25 -5.97 6.63 -48.16 -0.32 -6.29 16 17 C 0.13 5.21 4.60 46.75 0.21 5.42 16 18 C 0.15 7.94 6.99 86.44 0.60 8.54 16 19 N -0.63 -36.32 3.70 -716.68 -2.65 -38.97 16 20 C -0.23 -14.30 10.69 84.03 0.90 -13.40 16 21 H 0.08 4.76 7.83 -2.91 -0.02 4.74 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 23 N -0.95 -61.08 11.29 21.65 0.24 -60.83 16 24 Si 0.98 48.45 29.56 68.60 2.03 50.47 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 28 C 0.12 5.40 8.27 86.48 0.72 6.12 16 29 H 0.04 0.95 7.16 -2.39 -0.02 0.93 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.96 7.86 -2.39 -0.02 1.94 16 33 H 0.10 2.44 5.29 -2.39 -0.01 2.42 16 34 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.23 1.17 7.04 -2.91 -0.02 1.15 16 36 H 0.18 0.26 6.78 -2.91 -0.02 0.24 16 37 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 38 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 39 H 0.15 1.92 7.74 -2.91 -0.02 1.90 16 40 H 0.13 4.75 7.90 -2.39 -0.02 4.73 16 41 H 0.02 1.45 5.70 -2.39 -0.01 1.44 16 42 H 0.05 2.76 6.87 -2.38 -0.02 2.74 16 43 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 45 H 0.04 1.83 6.31 -2.39 -0.02 1.81 16 Total: -1.00 -85.78 370.27 4.09 -81.69 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.02 Total: 10.32 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 8.72 Total: 26.41 kcal Atomic # 7 Polarization: -134.64 SS G_CDS: -7.63 Total: -142.26 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.47 kcal Total: -85.78 4.09 -81.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950844598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.439 kcal (2) G-P(sol) polarization free energy of solvation -85.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds