Wall clock time and date at job start Wed Apr 1 2020 00:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47486 * 2 1 4 4 C 1.34775 * 120.00109 * 98.73614 * 3 2 1 5 5 O 1.21568 * 120.00478 * 186.57929 * 4 3 2 6 6 C 1.47675 * 119.99587 * 6.58738 * 4 3 2 7 7 C 1.40233 * 120.49345 * 150.12295 * 6 4 3 8 8 C 1.38026 * 118.35097 * 179.97438 * 7 6 4 9 9 C 1.39160 * 119.25884 * 359.97438 * 8 7 6 10 10 N 1.39495 * 119.52840 * 179.97438 * 9 8 7 11 11 C 1.35909 * 126.10567 * 180.02562 * 10 9 8 12 12 C 1.35247 * 107.60862 * 179.72440 * 11 10 9 13 13 C 1.40004 * 107.96773 * 0.37205 * 12 11 10 14 14 N 1.30797 * 108.37664 * 359.62149 * 13 12 11 15 15 N 1.32434 * 120.93897 * 0.25658 * 9 8 7 16 16 C 1.31632 * 121.80326 * 359.47650 * 15 9 8 17 17 C 1.46503 * 119.99916 * 278.74353 * 3 2 1 18 18 C 1.53947 * 113.73720 * 222.75344 * 17 3 2 19 19 N 1.47820 * 86.03202 * 222.08292 * 18 17 3 20 20 C 1.36937 * 134.45232 * 204.64027 * 19 18 17 21 21 H 1.08003 * 119.99710 * 179.86759 * 20 19 18 22 22 C 1.38809 * 120.00236 * 359.87609 * 20 19 18 23 23 N 1.31617 * 120.00079 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00027 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47177 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47163 * 119.99707 * 24 22 20 27 27 H 1.48498 * 109.47404 * 239.99984 * 24 22 20 28 28 C 1.47586 * 91.05120 * 24.55247 * 19 18 17 29 29 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46759 * 299.99968 * 1 2 3 31 31 H 1.08997 * 109.46868 * 59.99625 * 1 2 3 32 32 H 1.08998 * 109.46759 * 240.00032 * 2 1 3 33 33 H 1.08997 * 109.46868 * 120.00375 * 2 1 3 34 34 H 1.07992 * 120.82258 * 359.95101 * 7 6 4 35 35 H 1.08003 * 120.36935 * 179.97438 * 8 7 6 36 36 H 1.08004 * 126.19594 * 359.96336 * 11 10 9 37 37 H 1.07993 * 126.01452 * 180.24072 * 12 11 10 38 38 H 1.07994 * 125.81194 * 179.88330 * 13 12 11 39 39 H 1.08000 * 119.67854 * 180.26300 * 16 15 9 40 40 H 1.08995 * 112.94576 * 354.34808 * 17 3 2 41 41 H 1.08990 * 113.77102 * 336.34910 * 18 17 3 42 42 H 1.09000 * 113.76837 * 107.75147 * 18 17 3 43 43 H 0.96998 * 120.00150 * 179.97438 * 23 22 20 44 44 H 1.08998 * 113.76133 * 221.14802 * 28 19 18 45 45 H 1.09002 * 113.76713 * 89.75264 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.4103 1.9574 1.1536 5 8 2.7017 3.1374 1.1755 6 6 2.4858 1.1552 2.3912 7 6 3.4151 1.4756 3.3913 8 6 3.4472 0.6965 4.5302 9 6 2.5635 -0.3721 4.6483 10 7 2.5913 -1.1635 5.7967 11 6 1.7939 -2.2343 6.0509 12 6 2.1415 -2.7248 7.2624 13 6 3.1752 -1.9288 7.7703 14 7 3.4470 -0.9970 6.8935 15 7 1.7003 -0.6516 3.6837 16 6 1.6323 0.0680 2.5836 17 6 2.0809 2.1361 -1.2540 18 6 3.3716 2.9588 -1.4185 19 7 2.4988 4.0329 -1.9377 20 6 2.6878 5.1044 -2.7691 21 1 1.8615 5.7598 -3.0017 22 6 3.9414 5.3482 -3.3131 23 7 4.9485 4.5497 -3.0294 24 14 4.1990 6.8095 -4.4478 25 1 2.9190 7.5455 -4.6055 26 1 5.2214 7.7150 -3.8645 27 1 4.6617 6.3302 -5.7750 28 6 1.3421 3.4857 -1.2023 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.0893 2.3109 3.2731 35 1 4.1502 0.9137 5.3208 36 1 1.0248 -2.6253 5.4013 37 1 1.6982 -3.5788 7.7527 38 1 3.6675 -2.0638 8.7220 39 1 0.9122 -0.1882 1.8206 40 1 1.8311 1.5322 -2.1264 41 1 3.8584 3.2057 -0.4752 42 1 4.0596 2.5532 -2.1603 43 1 5.8244 4.7199 -3.4098 44 1 0.4128 3.5000 -1.7719 45 1 1.2316 3.8878 -0.1952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951084000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:11 Heat of formation + Delta-G solvation = 172.809238 kcal Electronic energy + Delta-G solvation = -29149.557226 eV Core-core repulsion = 25172.431203 eV Total energy + Delta-G solvation = -3977.126022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.72239 -42.01789 -40.65639 -38.56803 -37.13288 -34.80840 -34.11077 -33.76678 -31.58004 -31.46619 -30.75162 -29.23215 -26.57625 -26.27917 -25.31044 -24.77292 -24.19773 -22.39860 -22.02073 -21.73392 -20.36078 -19.51489 -18.78679 -18.26669 -18.05273 -17.06394 -16.75901 -16.64849 -16.60593 -16.32434 -15.91580 -15.57781 -15.41364 -14.85498 -14.72797 -14.47843 -14.31830 -14.23955 -14.07592 -13.75818 -13.68120 -13.45568 -13.28017 -13.00643 -12.85062 -12.71988 -12.47446 -12.13980 -12.00944 -11.91680 -11.83247 -11.55416 -11.47514 -11.23409 -11.04882 -10.94862 -10.56037 -10.23702 -9.61108 -9.37103 -8.89098 -7.91399 -5.24566 -0.80483 -0.08725 0.84327 1.00788 1.42557 1.45230 1.55368 1.69070 1.82616 1.88141 2.47949 2.55522 3.04703 3.25795 3.32219 3.34509 3.50144 3.56686 3.75974 3.83371 3.96543 4.02744 4.06038 4.25991 4.31306 4.34834 4.47272 4.54120 4.57706 4.66029 4.76687 4.81047 4.83397 4.93625 4.96472 5.03826 5.04402 5.12361 5.23882 5.25270 5.42452 5.49070 5.57486 5.84046 5.91346 5.95763 6.20950 6.39414 6.68589 6.90478 7.12420 7.59152 8.56360 9.26193 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.002339 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.312474 B =11967.030914 C =12757.724227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 N -0.589 5.589 4 C 0.554 3.446 5 O -0.558 6.558 6 C -0.205 4.205 7 C 0.000 4.000 8 C -0.174 4.174 9 C 0.381 3.619 10 N -0.345 5.345 11 C 0.063 3.937 12 C -0.254 4.254 13 C 0.071 3.929 14 N -0.324 5.324 15 N -0.507 5.507 16 C 0.151 3.849 17 C 0.129 3.871 18 C 0.153 3.847 19 N -0.634 5.634 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.983 3.017 25 H -0.264 1.264 26 H -0.296 1.296 27 H -0.286 1.286 28 C 0.113 3.887 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.200 0.800 37 H 0.189 0.811 38 H 0.228 0.772 39 H 0.225 0.775 40 H 0.134 0.866 41 H 0.022 0.978 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.060 0.940 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 -21.678 18.634 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.057 4.057 3 N -0.321 5.321 4 C 0.343 3.657 5 O -0.437 6.437 6 C -0.212 4.212 7 C -0.027 4.027 8 C -0.196 4.196 9 C 0.154 3.846 10 N -0.123 5.123 11 C -0.076 4.076 12 C -0.282 4.282 13 C -0.118 4.118 14 N -0.143 5.143 15 N -0.221 5.221 16 C -0.007 4.007 17 C 0.025 3.975 18 C 0.027 3.973 19 N -0.360 5.360 20 C -0.360 4.360 21 H 0.102 0.898 22 C -0.264 4.264 23 N -0.604 5.604 24 Si 0.811 3.189 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.213 1.213 28 C -0.013 4.013 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.217 0.783 37 H 0.207 0.793 38 H 0.244 0.756 39 H 0.240 0.760 40 H 0.152 0.848 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.482 -20.545 18.206 29.042 hybrid contribution 0.856 1.361 -0.455 1.671 sum -8.626 -19.184 17.751 27.523 Atomic orbital electron populations 1.22328 0.93549 1.04751 1.03036 1.22730 0.96195 0.80852 1.05907 1.47978 1.63040 1.15029 1.06037 1.18339 0.77181 0.86518 0.83679 1.90869 1.49803 1.17312 1.85712 1.20920 1.02834 1.00565 0.96837 1.21649 0.94516 0.96503 0.89999 1.21557 1.01958 0.95959 1.00151 1.18117 0.92188 0.88993 0.85332 1.45888 1.29267 1.23915 1.13274 1.23492 0.96731 0.88355 0.99036 1.22148 1.03204 1.06356 0.96478 1.24939 0.96191 0.91187 0.99465 1.77494 1.15358 1.25846 0.95558 1.67109 1.21894 1.31577 1.01482 1.24360 0.96241 0.87328 0.92724 1.23453 0.97107 0.91052 0.85902 1.22520 0.93151 0.86457 0.95213 1.46121 1.08160 1.30472 1.51272 1.19463 0.95440 1.02982 1.18118 0.89835 1.25701 0.95344 1.02319 1.03046 1.70044 1.00776 1.40460 1.49095 0.84946 0.77792 0.78376 0.77819 1.18791 1.22329 1.21264 1.23012 0.91727 0.91499 0.95037 0.87589 0.92160 0.91512 0.88111 0.87446 0.83404 0.82386 0.78282 0.79339 0.75566 0.75995 0.84793 0.96025 0.94325 0.94339 0.92227 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.15 71.98 0.66 -1.66 16 2 C 0.06 1.13 5.58 86.38 0.48 1.61 16 3 N -0.59 -17.41 2.74 -807.12 -2.21 -19.63 16 4 C 0.55 18.97 6.88 86.74 0.60 19.57 16 5 O -0.56 -25.26 12.50 -3.93 -0.05 -25.31 16 6 C -0.21 -5.52 5.60 -19.98 -0.11 -5.63 16 7 C 0.00 -0.01 9.72 22.70 0.22 0.22 16 8 C -0.17 -4.15 9.68 22.44 0.22 -3.94 16 9 C 0.38 8.89 7.55 132.89 1.00 9.89 16 10 N -0.35 -7.35 3.80 -192.19 -0.73 -8.08 16 11 C 0.06 0.97 11.09 83.37 0.92 1.89 16 12 C -0.25 -2.82 10.80 22.01 0.24 -2.58 16 13 C 0.07 0.92 12.02 85.28 1.02 1.95 16 14 N -0.32 -6.75 11.81 -56.96 -0.67 -7.42 16 15 N -0.51 -10.74 9.83 -191.97 -1.89 -12.62 16 16 C 0.15 3.11 8.67 85.04 0.74 3.85 16 17 C 0.13 4.84 4.58 46.75 0.21 5.05 16 18 C 0.15 7.91 6.79 86.44 0.59 8.50 16 19 N -0.63 -35.16 3.70 -716.70 -2.65 -37.82 16 20 C -0.23 -13.83 10.70 84.03 0.90 -12.93 16 21 H 0.08 4.76 7.83 -2.91 -0.02 4.74 16 22 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 23 N -0.95 -60.79 11.39 21.65 0.25 -60.54 16 24 Si 0.98 47.90 29.55 68.60 2.03 49.92 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 28 C 0.11 4.97 8.27 86.48 0.72 5.69 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.83 7.09 -2.39 -0.02 0.81 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.50 8.13 -2.39 -0.02 1.48 16 33 H 0.11 1.66 4.00 -2.48 -0.01 1.65 16 34 H 0.15 4.06 7.98 -2.91 -0.02 4.04 16 35 H 0.16 3.52 7.67 -2.91 -0.02 3.50 16 36 H 0.20 2.18 8.05 -2.91 -0.02 2.15 16 37 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.23 1.06 8.06 -2.91 -0.02 1.03 16 39 H 0.22 3.38 2.62 -2.91 -0.01 3.38 16 40 H 0.13 4.33 8.07 -2.39 -0.02 4.31 16 41 H 0.02 1.26 5.76 -2.39 -0.01 1.25 16 42 H 0.04 2.19 7.17 -2.39 -0.02 2.17 16 43 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.04 1.72 6.26 -2.39 -0.01 1.71 16 Total: -1.00 -84.46 368.68 3.98 -80.49 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.03 Total: 13.36 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 8.87 Total: 27.65 kcal Atomic # 7 Polarization: -138.20 SS G_CDS: -7.91 Total: -146.11 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.92 kcal Total: -84.46 3.98 -80.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951084000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.296 kcal (2) G-P(sol) polarization free energy of solvation -84.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds