Wall clock time and date at job start Wed Apr 1 2020 00:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47624 * 2 1 4 4 C 1.34776 * 119.99657 * 275.99931 * 3 2 1 5 5 O 1.21590 * 119.99614 * 184.81025 * 4 3 2 6 6 C 1.47592 * 120.00461 * 4.81124 * 4 3 2 7 7 C 1.39974 * 120.59576 * 301.44038 * 6 4 3 8 8 C 1.38353 * 118.34502 * 180.02562 * 7 6 4 9 9 C 1.38381 * 119.45630 * 359.97438 * 8 7 6 10 10 N 1.31848 * 121.18494 * 0.02562 * 9 8 7 11 11 C 1.32255 * 121.80001 * 359.69953 * 10 9 8 12 12 N 1.39354 * 119.79847 * 180.31183 * 11 10 9 13 13 C 1.35933 * 126.10663 * 333.34944 * 12 11 10 14 14 C 1.35240 * 107.60153 * 179.87588 * 13 12 11 15 15 C 1.40013 * 107.96871 * 0.38527 * 14 13 12 16 16 N 1.30778 * 108.38498 * 359.76156 * 15 14 13 17 17 C 1.46500 * 119.99869 * 95.99263 * 3 2 1 18 18 C 1.53494 * 114.20374 * 113.33309 * 17 3 2 19 19 N 1.47072 * 87.98619 * 87.51770 * 18 17 3 20 20 C 1.36933 * 136.05756 * 207.08259 * 19 18 17 21 21 H 1.08002 * 119.99997 * 31.64536 * 20 19 18 22 22 C 1.38810 * 119.99798 * 211.64337 * 20 19 18 23 23 N 1.31615 * 120.00462 * 6.40358 * 22 20 19 24 24 Si 1.86806 * 119.99844 * 186.40777 * 22 20 19 25 25 H 1.48498 * 109.47107 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.46962 * 299.99891 * 24 22 20 27 27 H 1.48501 * 109.47232 * 59.99938 * 24 22 20 28 28 C 1.47070 * 87.88128 * 27.34067 * 19 18 17 29 29 H 1.08996 * 109.47209 * 300.00606 * 1 2 3 30 30 H 1.09004 * 109.47016 * 59.99836 * 1 2 3 31 31 H 1.08996 * 109.47386 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47102 * 239.99921 * 2 1 3 33 33 H 1.09004 * 109.47016 * 120.00164 * 2 1 3 34 34 H 1.08003 * 120.82379 * 359.96840 * 7 6 4 35 35 H 1.07998 * 120.26740 * 180.02562 * 8 7 6 36 36 H 1.08002 * 119.40780 * 180.02562 * 9 8 7 37 37 H 1.08004 * 126.19971 * 0.02562 * 13 12 11 38 38 H 1.07997 * 126.01289 * 180.14530 * 14 13 12 39 39 H 1.07996 * 125.80431 * 179.73292 * 15 14 13 40 40 H 1.08993 * 113.28156 * 340.26661 * 17 3 2 41 41 H 1.09004 * 113.46745 * 332.73794 * 18 17 3 42 42 H 1.09001 * 113.46774 * 202.29336 * 18 17 3 43 43 H 0.97006 * 119.99397 * 355.37027 * 23 22 20 44 44 H 1.09002 * 113.46622 * 87.44442 * 28 19 18 45 45 H 1.08999 * 113.46508 * 217.87503 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1281 2.0571 -1.1608 5 8 2.6150 3.1712 -1.1719 6 6 1.6571 1.4451 -2.4186 7 6 2.1862 0.2267 -2.8598 8 6 1.7114 -0.3047 -4.0457 9 6 0.7368 0.3758 -4.7543 10 7 0.2523 1.5225 -4.3200 11 6 0.6674 2.0714 -3.1905 12 7 0.1219 3.2819 -2.7674 13 6 -0.4171 4.2405 -3.5665 14 6 -0.8335 5.2507 -2.7695 15 6 -0.5345 4.9075 -1.4454 16 7 0.0366 3.7310 -1.4431 17 6 2.3876 2.0276 1.2618 18 6 3.8843 2.3414 1.3939 19 7 3.6218 3.6231 0.7221 20 6 4.3390 4.4952 -0.0527 21 1 5.1162 4.1247 -0.7047 22 6 4.0669 5.8553 -0.0002 23 7 3.2097 6.3214 0.8831 24 14 4.9173 7.0243 -1.1833 25 1 4.4582 8.4124 -0.9233 26 1 6.3872 6.9446 -0.9871 27 1 4.5830 6.6453 -2.5797 28 6 2.2522 3.5591 1.2540 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9469 -0.2854 -2.2892 35 1 2.0976 -1.2433 -4.4149 36 1 0.3663 -0.0400 -5.6797 37 1 -0.5002 4.2013 -4.6426 38 1 -1.3091 6.1632 -3.0972 39 1 -0.7401 5.5119 -0.5743 40 1 1.9534 1.5439 2.1367 41 1 4.5209 1.6710 0.8165 42 1 4.2150 2.4524 2.4266 43 1 2.7180 5.7085 1.4520 44 1 2.1527 3.9912 2.2498 45 1 1.4985 3.9263 0.5575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951111173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:15 Heat of formation + Delta-G solvation = 208.099732 kcal Electronic energy + Delta-G solvation = -32013.754697 eV Core-core repulsion = 28038.158986 eV Total energy + Delta-G solvation = -3975.595712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.42673 -40.17151 -39.36588 -36.57373 -35.18024 -33.56499 -32.52591 -31.88894 -30.07395 -29.74379 -29.30507 -26.94311 -24.94846 -24.56638 -24.11639 -23.03136 -22.81735 -21.09137 -20.69769 -20.19539 -18.34884 -18.02604 -17.18685 -16.76819 -16.60336 -15.61415 -15.43050 -14.92064 -14.59463 -14.31419 -14.01976 -13.87901 -13.76856 -13.59037 -13.45823 -13.33138 -13.16619 -13.03291 -12.90212 -12.63668 -12.46635 -12.03796 -11.58366 -11.21293 -11.07431 -10.81250 -10.58624 -10.49557 -10.41411 -10.24704 -9.97182 -9.90378 -9.77122 -9.60387 -8.92770 -8.90813 -8.63304 -8.19925 -8.12984 -7.78547 -6.29125 -5.77428 -2.86504 0.62351 0.92145 2.27682 2.37087 3.16856 3.34615 3.40126 3.60509 3.67269 3.80614 3.82513 4.27839 4.52368 4.63946 4.78500 4.80506 4.90328 5.03615 5.20298 5.22458 5.24899 5.28863 5.41536 5.47636 5.61416 5.67209 5.74269 5.77221 5.84575 5.88818 5.91614 5.97854 6.03588 6.20555 6.26953 6.27256 6.40954 6.56427 6.62974 6.83900 6.88859 7.18525 7.29529 7.50287 7.52341 7.95233 8.01768 8.09769 8.67840 9.14522 9.25742 10.13681 10.96589 11.64587 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.006011 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.697136 B = 4657.316466 C = 5651.259299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.590 5.590 4 C 0.537 3.463 5 O -0.400 6.400 6 C -0.150 4.150 7 C -0.037 4.037 8 C -0.190 4.190 9 C 0.135 3.865 10 N -0.506 5.506 11 C 0.407 3.593 12 N -0.329 5.329 13 C 0.067 3.933 14 C -0.256 4.256 15 C 0.069 3.931 16 N -0.244 5.244 17 C 0.099 3.901 18 C 0.095 3.905 19 N -0.580 5.580 20 C -0.253 4.253 21 H 0.046 0.954 22 C -0.028 4.028 23 N -0.941 5.941 24 Si 1.072 2.928 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.298 1.298 28 C 0.123 3.877 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.152 0.848 39 H 0.189 0.811 40 H 0.082 0.918 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.031 0.969 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.002 -15.900 -7.787 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.326 5.326 4 C 0.319 3.681 5 O -0.265 6.265 6 C -0.158 4.158 7 C -0.063 4.063 8 C -0.211 4.211 9 C -0.024 4.024 10 N -0.219 5.219 11 C 0.178 3.822 12 N -0.107 5.107 13 C -0.073 4.073 14 C -0.284 4.284 15 C -0.122 4.122 16 N -0.060 5.060 17 C -0.006 4.006 18 C -0.032 4.032 19 N -0.306 5.306 20 C -0.382 4.382 21 H 0.064 0.936 22 C -0.228 4.228 23 N -0.585 5.585 24 Si 0.904 3.096 25 H -0.212 1.212 26 H -0.224 1.224 27 H -0.226 1.226 28 C -0.004 4.004 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.183 0.817 37 H 0.191 0.809 38 H 0.170 0.830 39 H 0.205 0.795 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.466 -13.964 -8.210 18.278 hybrid contribution 0.098 -1.548 0.266 1.574 sum -8.368 -15.512 -7.944 19.333 Atomic orbital electron populations 1.22168 0.96522 1.01073 1.02581 1.21567 0.94128 0.83774 1.02341 1.47201 1.67028 1.12691 1.05728 1.17732 0.81069 0.87152 0.82155 1.91398 1.35912 1.15460 1.83708 1.20986 0.97883 0.96887 1.00075 1.21683 0.97179 0.92269 0.95197 1.22030 1.00209 1.02540 0.96317 1.22584 0.92574 0.88586 0.98638 1.66960 1.28373 1.12856 1.13698 1.17460 0.89662 0.84947 0.90084 1.45585 1.46701 1.12409 1.06024 1.22697 0.97209 0.89297 0.98061 1.21586 1.12178 1.01962 0.92680 1.24109 0.95828 0.93694 0.98521 1.77655 1.19993 1.14645 0.93731 1.22713 0.97272 0.96426 0.84167 1.22971 0.93589 0.91164 0.95485 1.45147 1.06861 1.23734 1.54903 1.19189 1.15728 0.87527 1.15747 0.93615 1.25812 1.01429 0.95050 1.00492 1.70710 1.28269 1.37474 1.22004 0.83396 0.74944 0.76272 0.75035 1.21209 1.22443 1.22580 1.22596 0.91563 0.89349 0.96844 0.92155 0.93105 0.92395 0.91240 0.90570 0.83663 0.83848 0.81680 0.80856 0.82992 0.79453 0.90016 0.94944 0.95029 0.92324 0.95171 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.13 37.16 0.38 -1.64 16 2 C 0.11 1.34 5.89 -4.04 -0.02 1.31 16 3 N -0.59 -10.43 2.74 -166.93 -0.46 -10.89 16 4 C 0.54 10.99 4.97 -12.44 -0.06 10.93 16 5 O -0.40 -10.41 9.50 5.29 0.05 -10.36 16 6 C -0.15 -2.56 4.23 -104.67 -0.44 -3.01 16 7 C -0.04 -0.46 7.95 -38.89 -0.31 -0.77 16 8 C -0.19 -1.82 10.09 -39.49 -0.40 -2.22 16 9 C 0.13 1.42 11.17 -17.49 -0.20 1.22 16 10 N -0.51 -7.34 10.01 -12.03 -0.12 -7.46 16 11 C 0.41 7.07 7.41 -154.37 -1.14 5.93 16 12 N -0.33 -6.21 3.60 -11.89 -0.04 -6.25 16 13 C 0.07 1.11 11.21 -16.80 -0.19 0.92 16 14 C -0.26 -4.10 10.80 -39.98 -0.43 -4.53 16 15 C 0.07 1.27 12.02 -17.34 -0.21 1.06 16 16 N -0.24 -4.99 8.43 30.64 0.26 -4.73 16 17 C 0.10 1.92 4.84 -67.68 -0.33 1.59 16 18 C 0.10 2.12 8.36 -8.51 -0.07 2.05 16 19 N -0.58 -15.79 2.00 -184.61 -0.37 -16.16 16 20 C -0.25 -7.78 8.42 -15.06 -0.13 -7.91 16 21 H 0.05 1.46 7.84 -52.49 -0.41 1.05 16 22 C -0.03 -0.88 5.49 -17.43 -0.10 -0.98 16 23 N -0.94 -30.57 13.65 55.49 0.76 -29.81 16 24 Si 1.07 28.38 29.92 -169.99 -5.09 23.29 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 27 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 28 C 0.12 3.00 5.42 -8.37 -0.05 2.96 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.74 7.36 -51.93 -0.38 0.36 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.77 4.47 -51.93 -0.23 0.54 16 33 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 34 H 0.15 1.56 6.98 -52.48 -0.37 1.19 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.17 2.33 8.06 -52.48 -0.42 1.91 16 38 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 39 H 0.19 3.12 8.06 -52.49 -0.42 2.70 16 40 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 8.52 5.48 -40.82 -0.22 8.30 16 44 H 0.03 0.76 7.60 -51.93 -0.39 0.37 16 45 H 0.07 1.84 5.88 -51.93 -0.31 1.53 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -39.74 364.17 -8.97 -48.71 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.75 Total: 1.25 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -3.69 Total: 6.93 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: 0.03 Total: -75.30 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.05 Total: -10.36 kcal Atomic # 14 Polarization: 28.38 SS G_CDS: -5.09 Total: 23.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.74 -8.97 -48.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951111173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.809 kcal (2) G-P(sol) polarization free energy of solvation -39.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 217.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 208.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds