Wall clock time and date at job start Wed Apr 1 2020 00:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47624 * 2 1 4 4 C 1.34776 * 119.99657 * 275.99931 * 3 2 1 5 5 O 1.21590 * 119.99614 * 184.81025 * 4 3 2 6 6 C 1.47592 * 120.00461 * 4.81124 * 4 3 2 7 7 C 1.39974 * 120.59576 * 301.44038 * 6 4 3 8 8 C 1.38353 * 118.34502 * 180.02562 * 7 6 4 9 9 C 1.38381 * 119.45630 * 359.97438 * 8 7 6 10 10 N 1.31848 * 121.18494 * 0.02562 * 9 8 7 11 11 C 1.32255 * 121.80001 * 359.69953 * 10 9 8 12 12 N 1.39354 * 119.79847 * 180.31183 * 11 10 9 13 13 C 1.35933 * 126.10663 * 333.34944 * 12 11 10 14 14 C 1.35240 * 107.60153 * 179.87588 * 13 12 11 15 15 C 1.40013 * 107.96871 * 0.38527 * 14 13 12 16 16 N 1.30778 * 108.38498 * 359.76156 * 15 14 13 17 17 C 1.46500 * 119.99869 * 95.99263 * 3 2 1 18 18 C 1.53494 * 114.20374 * 113.33309 * 17 3 2 19 19 N 1.47072 * 87.98619 * 87.51770 * 18 17 3 20 20 C 1.36933 * 136.05756 * 207.08259 * 19 18 17 21 21 H 1.08002 * 119.99997 * 31.64536 * 20 19 18 22 22 C 1.38810 * 119.99798 * 211.64337 * 20 19 18 23 23 N 1.31615 * 120.00462 * 6.40358 * 22 20 19 24 24 Si 1.86806 * 119.99844 * 186.40777 * 22 20 19 25 25 H 1.48498 * 109.47107 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.46962 * 299.99891 * 24 22 20 27 27 H 1.48501 * 109.47232 * 59.99938 * 24 22 20 28 28 C 1.47070 * 87.88128 * 27.34067 * 19 18 17 29 29 H 1.08996 * 109.47209 * 300.00606 * 1 2 3 30 30 H 1.09004 * 109.47016 * 59.99836 * 1 2 3 31 31 H 1.08996 * 109.47386 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47102 * 239.99921 * 2 1 3 33 33 H 1.09004 * 109.47016 * 120.00164 * 2 1 3 34 34 H 1.08003 * 120.82379 * 359.96840 * 7 6 4 35 35 H 1.07998 * 120.26740 * 180.02562 * 8 7 6 36 36 H 1.08002 * 119.40780 * 180.02562 * 9 8 7 37 37 H 1.08004 * 126.19971 * 0.02562 * 13 12 11 38 38 H 1.07997 * 126.01289 * 180.14530 * 14 13 12 39 39 H 1.07996 * 125.80431 * 179.73292 * 15 14 13 40 40 H 1.08993 * 113.28156 * 340.26661 * 17 3 2 41 41 H 1.09004 * 113.46745 * 332.73794 * 18 17 3 42 42 H 1.09001 * 113.46774 * 202.29336 * 18 17 3 43 43 H 0.97006 * 119.99397 * 355.37027 * 23 22 20 44 44 H 1.09002 * 113.46622 * 87.44442 * 28 19 18 45 45 H 1.08999 * 113.46508 * 217.87503 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1281 2.0571 -1.1608 5 8 2.6150 3.1712 -1.1719 6 6 1.6571 1.4451 -2.4186 7 6 2.1862 0.2267 -2.8598 8 6 1.7114 -0.3047 -4.0457 9 6 0.7368 0.3758 -4.7543 10 7 0.2523 1.5225 -4.3200 11 6 0.6674 2.0714 -3.1905 12 7 0.1219 3.2819 -2.7674 13 6 -0.4171 4.2405 -3.5665 14 6 -0.8335 5.2507 -2.7695 15 6 -0.5345 4.9075 -1.4454 16 7 0.0366 3.7310 -1.4431 17 6 2.3876 2.0276 1.2618 18 6 3.8843 2.3414 1.3939 19 7 3.6218 3.6231 0.7221 20 6 4.3390 4.4952 -0.0527 21 1 5.1162 4.1247 -0.7047 22 6 4.0669 5.8553 -0.0002 23 7 3.2097 6.3214 0.8831 24 14 4.9173 7.0243 -1.1833 25 1 4.4582 8.4124 -0.9233 26 1 6.3872 6.9446 -0.9871 27 1 4.5830 6.6453 -2.5797 28 6 2.2522 3.5591 1.2540 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9469 -0.2854 -2.2892 35 1 2.0976 -1.2433 -4.4149 36 1 0.3663 -0.0400 -5.6797 37 1 -0.5002 4.2013 -4.6426 38 1 -1.3091 6.1632 -3.0972 39 1 -0.7401 5.5119 -0.5743 40 1 1.9534 1.5439 2.1367 41 1 4.5209 1.6710 0.8165 42 1 4.2150 2.4524 2.4266 43 1 2.7180 5.7085 1.4520 44 1 2.1527 3.9912 2.2498 45 1 1.4985 3.9263 0.5575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951111173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:14 Heat of formation + Delta-G solvation = 181.832698 kcal Electronic energy + Delta-G solvation = -32014.893721 eV Core-core repulsion = 28038.158986 eV Total energy + Delta-G solvation = -3976.734736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.65755 -41.54554 -40.69024 -38.26446 -36.57575 -34.69024 -34.28915 -33.39737 -31.34313 -31.04442 -30.49496 -28.94170 -26.50850 -26.19094 -25.24229 -24.78186 -23.93349 -22.55328 -21.96226 -21.66225 -19.79290 -19.31001 -19.21212 -18.10980 -17.74091 -16.81392 -16.58226 -16.25202 -16.07100 -15.96820 -15.79923 -15.46410 -15.38673 -15.07856 -14.95443 -14.58280 -14.48634 -14.34132 -14.22697 -13.74472 -13.59600 -13.31680 -13.05863 -12.74588 -12.67679 -12.63459 -12.49114 -12.00723 -11.98225 -11.79249 -11.53003 -11.30563 -11.12221 -10.97437 -10.93778 -10.53628 -10.21306 -10.05019 -9.34764 -9.31066 -8.46542 -8.12842 -5.19506 -0.44821 -0.05447 1.07630 1.20742 1.43513 1.56214 1.71995 1.82869 1.96055 2.16336 2.64237 2.66105 3.26367 3.39053 3.44666 3.48174 3.63610 3.75360 3.82507 3.96105 4.01481 4.06585 4.18580 4.32530 4.41772 4.45440 4.51774 4.53987 4.61244 4.68612 4.72674 4.78361 4.85807 4.90586 4.91883 4.96748 5.01556 5.15735 5.21884 5.29484 5.42116 5.57343 5.70458 5.98678 6.10572 6.39383 6.40097 6.68305 6.82172 6.92816 7.70211 7.82821 8.75595 9.28217 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.006011 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.697136 B = 4657.316466 C = 5651.259299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.537 3.463 5 O -0.473 6.473 6 C -0.179 4.179 7 C -0.039 4.039 8 C -0.160 4.160 9 C 0.139 3.861 10 N -0.517 5.517 11 C 0.372 3.628 12 N -0.338 5.338 13 C 0.059 3.941 14 C -0.257 4.257 15 C 0.040 3.960 16 N -0.278 5.278 17 C 0.129 3.871 18 C 0.097 3.903 19 N -0.606 5.606 20 C -0.244 4.244 21 H 0.025 0.975 22 C -0.086 4.086 23 N -0.971 5.971 24 Si 1.115 2.885 25 H -0.286 1.286 26 H -0.274 1.274 27 H -0.300 1.300 28 C 0.119 3.881 29 H 0.047 0.953 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.165 0.835 35 H 0.197 0.803 36 H 0.213 0.787 37 H 0.201 0.799 38 H 0.182 0.818 39 H 0.189 0.811 40 H 0.127 0.873 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.253 0.747 44 H 0.015 0.985 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.024 -20.033 -9.762 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.325 5.325 4 C 0.322 3.678 5 O -0.342 6.342 6 C -0.188 4.188 7 C -0.065 4.065 8 C -0.180 4.180 9 C -0.020 4.020 10 N -0.231 5.231 11 C 0.146 3.854 12 N -0.117 5.117 13 C -0.081 4.081 14 C -0.285 4.285 15 C -0.149 4.149 16 N -0.096 5.096 17 C 0.024 3.976 18 C -0.029 4.029 19 N -0.333 5.333 20 C -0.374 4.374 21 H 0.042 0.958 22 C -0.279 4.279 23 N -0.618 5.618 24 Si 0.942 3.058 25 H -0.212 1.212 26 H -0.200 1.200 27 H -0.227 1.227 28 C -0.007 4.007 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.182 0.818 35 H 0.214 0.786 36 H 0.229 0.771 37 H 0.218 0.782 38 H 0.199 0.801 39 H 0.206 0.794 40 H 0.144 0.856 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.496 -18.189 -10.160 22.500 hybrid contribution 0.066 -0.562 0.748 0.938 sum -8.430 -18.752 -9.411 22.611 Atomic orbital electron populations 1.22071 0.96103 1.02572 1.00577 1.21933 0.94345 0.80987 1.04816 1.47367 1.66209 1.14507 1.04387 1.18263 0.79519 0.86358 0.83680 1.91339 1.39270 1.18465 1.85130 1.20819 0.99666 0.99177 0.99109 1.21994 0.97190 0.90743 0.96589 1.22581 0.98034 1.03399 0.93995 1.23555 0.91754 0.86971 0.99694 1.67040 1.29000 1.14457 1.12580 1.17719 0.90956 0.85194 0.91566 1.45799 1.46802 1.13471 1.05609 1.23238 0.96691 0.88955 0.99257 1.21918 1.12109 1.03046 0.91434 1.24370 0.96566 0.93965 0.99955 1.77525 1.20891 1.15613 0.95566 1.22412 0.95067 0.93473 0.86653 1.23096 0.95807 0.88635 0.95400 1.45283 1.08287 1.24464 1.55230 1.19215 1.14595 0.88292 1.15262 0.95778 1.26983 1.02142 0.96995 1.01779 1.70804 1.30030 1.37222 1.23737 0.82817 0.75375 0.74473 0.73112 1.21209 1.19992 1.22734 1.22536 0.89872 0.93339 0.94988 0.93377 0.95950 0.88962 0.89132 0.87630 0.81795 0.78626 0.77051 0.78191 0.80108 0.79438 0.85570 0.94772 0.93864 0.93563 0.96733 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 10.13 71.98 0.73 -2.70 16 2 C 0.10 2.24 5.89 86.38 0.51 2.75 16 3 N -0.59 -20.35 2.74 -800.30 -2.19 -22.55 16 4 C 0.54 22.34 4.97 86.71 0.43 22.77 16 5 O -0.47 -25.77 9.50 -4.00 -0.04 -25.80 16 6 C -0.18 -6.00 4.23 -19.89 -0.08 -6.09 16 7 C -0.04 -0.85 7.95 22.72 0.18 -0.67 16 8 C -0.16 -2.18 10.09 22.33 0.23 -1.96 16 9 C 0.14 2.27 11.17 84.72 0.95 3.22 16 10 N -0.52 -13.95 10.01 -191.97 -1.92 -15.87 16 11 C 0.37 12.87 7.41 133.27 0.99 13.86 16 12 N -0.34 -13.25 3.60 -191.53 -0.69 -13.94 16 13 C 0.06 1.99 11.21 83.37 0.93 2.93 16 14 C -0.26 -8.61 10.80 22.01 0.24 -8.37 16 15 C 0.04 1.62 12.02 85.28 1.02 2.65 16 16 N -0.28 -12.18 8.43 -56.96 -0.48 -12.66 16 17 C 0.13 4.95 4.84 45.55 0.22 5.17 16 18 C 0.10 4.32 8.36 83.18 0.70 5.02 16 19 N -0.61 -34.27 2.00 -737.98 -1.48 -35.75 16 20 C -0.24 -15.66 8.42 84.03 0.71 -14.95 16 21 H 0.02 1.62 7.84 -2.91 -0.02 1.60 16 22 C -0.09 -5.59 5.49 84.86 0.47 -5.12 16 23 N -0.97 -66.30 13.65 21.65 0.30 -66.00 16 24 Si 1.12 59.60 29.92 68.60 2.05 61.65 16 25 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 26 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.30 -15.84 7.11 99.48 0.71 -15.14 16 28 C 0.12 6.09 5.42 83.26 0.45 6.54 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.02 0.62 7.36 -2.38 -0.02 0.60 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.65 4.47 -2.38 -0.01 1.64 16 33 H 0.11 1.77 8.03 -2.38 -0.02 1.76 16 34 H 0.16 2.84 6.98 -2.91 -0.02 2.82 16 35 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 36 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.20 5.32 8.06 -2.91 -0.02 5.30 16 38 H 0.18 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.19 7.05 8.06 -2.91 -0.02 7.03 16 40 H 0.13 3.74 8.12 -2.39 -0.02 3.72 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.25 17.33 5.48 -92.70 -0.51 16.82 16 44 H 0.02 0.80 7.60 -2.39 -0.02 0.78 16 45 H 0.04 2.54 5.88 -2.39 -0.01 2.52 16 Total: -1.00 -96.52 364.17 5.48 -91.03 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.28 Total: 14.84 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 8.66 Total: 25.04 kcal Atomic # 7 Polarization: -160.29 SS G_CDS: -6.47 Total: -166.76 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.04 Total: -25.80 kcal Atomic # 14 Polarization: 59.60 SS G_CDS: 2.05 Total: 61.65 kcal Total: -96.52 5.48 -91.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951111173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.865 kcal (2) G-P(sol) polarization free energy of solvation -96.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds