Wall clock time and date at job start Wed Apr 1 2020 00:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46990 * 2 1 4 4 C 1.34776 * 119.99896 * 253.72434 * 3 2 1 5 5 O 1.21546 * 119.99963 * 184.56217 * 4 3 2 6 6 C 1.47864 * 119.99910 * 4.56818 * 4 3 2 7 7 C 1.39659 * 120.08882 * 22.63843 * 6 4 3 8 8 C 1.38014 * 120.09996 * 179.97438 * 7 6 4 9 9 C 1.38162 * 120.27083 * 0.02562 * 8 7 6 10 10 C 1.39410 * 120.17289 * 0.02562 * 9 8 7 11 11 C 1.48422 * 120.05260 * 179.97438 * 10 9 8 12 12 N 1.33972 * 125.64788 * 359.97438 * 11 10 9 13 13 C 1.30679 * 109.77989 * 180.02562 * 12 11 10 14 14 N 1.34514 * 108.29330 * 359.97438 * 13 12 11 15 15 H 0.97004 * 126.74380 * 180.02562 * 14 13 12 16 16 N 1.31489 * 125.65099 * 179.69504 * 11 10 9 17 17 C 1.39100 * 119.89952 * 359.68154 * 10 9 8 18 18 C 1.46497 * 120.00066 * 73.73306 * 3 2 1 19 19 C 1.53942 * 113.74147 * 141.25644 * 18 3 2 20 20 N 1.47813 * 86.03625 * 90.88400 * 19 18 3 21 21 C 1.36941 * 134.45544 * 204.64906 * 20 19 18 22 22 H 1.07990 * 120.00184 * 174.00324 * 21 20 19 23 23 C 1.38816 * 119.99782 * 354.00132 * 21 20 19 24 24 N 1.31625 * 120.00051 * 4.93316 * 23 21 20 25 25 Si 1.86796 * 119.99835 * 184.93444 * 23 21 20 26 26 H 1.48501 * 109.47115 * 95.00030 * 25 23 21 27 27 H 1.48503 * 109.47000 * 214.99685 * 25 23 21 28 28 H 1.48496 * 109.47236 * 334.99773 * 25 23 21 29 29 C 1.47575 * 91.05454 * 24.54817 * 20 19 18 30 30 H 1.08993 * 109.47316 * 300.00450 * 1 2 3 31 31 H 1.09001 * 109.46800 * 60.00517 * 1 2 3 32 32 H 1.08996 * 109.47529 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47316 * 239.99550 * 2 1 3 34 34 H 1.09000 * 109.46666 * 120.00015 * 2 1 3 35 35 H 1.08004 * 119.94727 * 359.97438 * 7 6 4 36 36 H 1.07997 * 119.86475 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.91830 * 180.02562 * 9 8 7 38 38 H 1.08009 * 125.85497 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.13461 * 180.29729 * 17 10 9 40 40 H 1.08999 * 112.94647 * 9.66291 * 18 3 2 41 41 H 1.09004 * 113.76613 * 205.14294 * 19 18 3 42 42 H 1.08996 * 113.77366 * 336.54086 * 19 18 3 43 43 H 0.97001 * 119.99636 * 179.97438 * 24 23 21 44 44 H 1.09000 * 113.77362 * 221.15906 * 29 20 19 45 45 H 1.09001 * 113.77203 * 89.75641 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5513 1.9075 -1.1204 5 8 3.0317 3.0238 -1.0986 6 6 2.5516 1.1270 -2.3763 7 6 1.6287 0.0949 -2.5593 8 6 1.6284 -0.6335 -3.7316 9 6 2.5398 -0.3472 -4.7297 10 6 3.4668 0.6799 -4.5585 11 6 4.4451 0.9848 -5.6322 12 7 4.5389 0.3477 -6.8070 13 6 5.5060 0.8673 -7.5159 14 7 6.0628 1.8637 -6.8042 15 1 6.8023 2.4290 -7.0774 16 7 5.3599 1.9284 -5.5901 17 6 3.4695 1.4226 -3.3823 18 6 1.9274 2.1903 1.2179 19 6 3.1495 3.0965 1.4527 20 7 2.4063 4.1225 0.6912 21 6 2.7673 5.2193 -0.0450 22 1 2.0193 5.7698 -0.5961 23 6 4.0947 5.6237 -0.0826 24 7 5.0206 4.8987 0.5086 25 14 4.5669 7.1968 -0.9724 26 1 4.6224 8.3179 -0.0001 27 1 5.8985 7.0258 -1.6071 28 1 3.5554 7.4973 -2.0172 29 6 1.1200 3.4890 1.0404 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.9142 -0.1336 -1.7823 36 1 0.9127 -1.4305 -3.8694 37 1 2.5342 -0.9205 -5.6449 38 1 5.8060 0.5515 -8.5042 39 1 4.1828 2.2222 -3.2477 40 1 1.6373 1.6094 2.0933 41 1 3.3093 3.3561 2.4992 42 1 4.0556 2.7496 0.9560 43 1 5.9482 5.1811 0.4819 44 1 0.4087 3.4547 0.2152 45 1 0.6823 3.8642 1.9655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951121687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:35 Heat of formation + Delta-G solvation = 215.806506 kcal Electronic energy + Delta-G solvation = -30245.271466 eV Core-core repulsion = 26270.009945 eV Total energy + Delta-G solvation = -3975.261521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14739 -40.28381 -38.50088 -36.13457 -35.45585 -33.12902 -31.96430 -31.74173 -30.73154 -30.10229 -29.62933 -27.16425 -24.59569 -24.33139 -23.89865 -23.02488 -22.72047 -21.92558 -20.78151 -19.93959 -18.61016 -17.69883 -16.71283 -16.63385 -16.37137 -15.60493 -15.56840 -14.91669 -14.83724 -14.50937 -14.45539 -14.01441 -13.73531 -13.44013 -13.27570 -13.05211 -12.89231 -12.58207 -12.29692 -12.23172 -12.06348 -11.66229 -11.31906 -11.17871 -11.04168 -10.97904 -10.74848 -10.62595 -10.40157 -10.34038 -10.20166 -10.05561 -9.94241 -9.54217 -9.22176 -8.79793 -8.62611 -8.38237 -8.21850 -7.72936 -6.31945 -5.36964 -2.61690 0.84605 1.34354 1.69947 2.51546 2.82545 3.55330 3.59488 3.64310 3.65179 3.66146 3.89387 4.28796 4.47879 4.75390 4.77234 4.90713 4.97232 5.09328 5.25138 5.27179 5.40119 5.47528 5.51571 5.62467 5.73092 5.78078 5.82627 5.86511 5.91896 6.03722 6.07203 6.12293 6.16968 6.29002 6.44250 6.49370 6.54072 6.61570 6.66588 6.74063 6.87905 6.96610 7.12018 7.48161 7.66150 7.90292 7.94389 8.22241 8.35614 9.29627 9.40923 10.12297 10.98927 11.82609 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008891 B = 0.004806 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.485696 B = 5825.026998 C = 8551.889336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 N -0.597 5.597 4 C 0.508 3.492 5 O -0.397 6.397 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.138 4.138 9 C -0.065 4.065 10 C -0.030 4.030 11 C 0.272 3.728 12 N -0.537 5.537 13 C 0.259 3.741 14 N -0.484 5.484 15 H 0.443 0.557 16 N -0.292 5.292 17 C -0.028 4.028 18 C 0.096 3.904 19 C 0.162 3.838 20 N -0.581 5.581 21 C -0.173 4.173 22 H 0.067 0.933 23 C -0.002 4.002 24 N -0.919 5.919 25 Si 0.895 3.105 26 H -0.296 1.296 27 H -0.296 1.296 28 H -0.285 1.285 29 C 0.103 3.897 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.163 0.837 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.224 0.776 39 H 0.143 0.857 40 H 0.077 0.923 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.244 0.756 44 H 0.037 0.963 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.679 -16.649 -11.107 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.046 4.046 3 N -0.333 5.333 4 C 0.292 3.708 5 O -0.262 6.262 6 C -0.120 4.120 7 C -0.132 4.132 8 C -0.156 4.156 9 C -0.085 4.085 10 C -0.033 4.033 11 C -0.008 4.008 12 N -0.265 5.265 13 C -0.040 4.040 14 N -0.203 5.203 15 H 0.289 0.711 16 N -0.121 5.121 17 C -0.049 4.049 18 C -0.008 4.008 19 C 0.036 3.964 20 N -0.307 5.307 21 C -0.301 4.301 22 H 0.085 0.915 23 C -0.197 4.197 24 N -0.569 5.569 25 Si 0.728 3.272 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.211 1.211 29 C -0.025 4.025 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.180 0.820 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.240 0.760 39 H 0.161 0.839 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.263 -15.532 -10.784 19.383 hybrid contribution 0.908 1.164 -1.064 1.820 sum -3.355 -14.367 -11.848 18.922 Atomic orbital electron populations 1.22314 0.96542 1.01792 1.02995 1.22296 0.93960 0.84512 1.03814 1.47314 1.63066 1.12111 1.10853 1.18459 0.82058 0.87584 0.82725 1.91468 1.37135 1.15033 1.82559 1.20303 0.97732 0.97609 0.96360 1.22683 0.98721 0.93808 0.97985 1.21032 0.99783 1.01231 0.93574 1.21262 0.92946 0.95236 0.99089 1.17322 0.95690 0.98950 0.91353 1.22337 0.94759 0.91112 0.92571 1.70477 1.20817 1.30516 1.04694 1.26055 0.90982 0.87853 0.99140 1.48171 1.29845 1.29058 1.13194 0.71127 1.78461 1.10070 1.22540 1.01039 1.21365 0.96620 0.96756 0.90173 1.23056 1.01238 0.91378 0.85168 1.22456 0.94705 0.85138 0.94143 1.45548 0.99117 1.30135 1.55887 1.18595 0.92354 0.99787 1.19366 0.91506 1.24483 0.95716 0.98354 1.01169 1.69808 0.99573 1.38105 1.49372 0.86326 0.77585 0.84280 0.79044 1.22420 1.22248 1.21133 1.22980 0.91598 0.90807 0.97126 0.91626 0.91915 0.91827 0.87870 0.91575 0.82028 0.85281 0.84860 0.76028 0.83886 0.90510 0.95401 0.90656 0.94630 0.94498 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.06 37.16 0.34 -1.44 16 2 C 0.08 0.95 5.59 -4.04 -0.02 0.93 16 3 N -0.60 -10.51 2.77 -169.01 -0.47 -10.97 16 4 C 0.51 10.64 7.04 -12.32 -0.09 10.55 16 5 O -0.40 -10.55 10.29 5.33 0.05 -10.50 16 6 C -0.12 -2.04 5.60 -105.01 -0.59 -2.63 16 7 C -0.11 -1.50 7.51 -39.13 -0.29 -1.79 16 8 C -0.14 -1.57 10.02 -39.69 -0.40 -1.97 16 9 C -0.07 -0.84 9.68 -39.17 -0.38 -1.22 16 10 C -0.03 -0.48 5.87 -104.95 -0.62 -1.10 16 11 C 0.27 4.29 7.77 -156.63 -1.22 3.08 16 12 N -0.54 -7.07 10.81 -12.38 -0.13 -7.20 16 13 C 0.26 2.33 13.11 -90.71 -1.19 1.14 16 14 N -0.48 -5.07 7.44 29.52 0.22 -4.85 16 15 H 0.44 2.91 8.96 -182.34 -1.63 1.28 16 16 N -0.29 -4.73 12.42 32.10 0.40 -4.33 16 17 C -0.03 -0.52 9.22 -38.84 -0.36 -0.88 16 18 C 0.10 1.84 4.50 -70.15 -0.32 1.52 16 19 C 0.16 4.00 6.38 -2.84 -0.02 3.98 16 20 N -0.58 -15.61 2.09 -177.89 -0.37 -15.98 16 21 C -0.17 -5.21 8.55 -15.06 -0.13 -5.34 16 22 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 23 C 0.00 -0.06 5.30 -17.43 -0.09 -0.16 16 24 N -0.92 -29.19 11.49 55.49 0.64 -28.55 16 25 Si 0.90 24.34 29.56 -169.99 -5.02 19.31 16 26 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 27 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 28 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 29 C 0.10 2.20 8.42 -2.97 -0.02 2.17 16 30 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.06 0.68 7.03 -51.93 -0.37 0.31 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.10 1.19 4.01 -52.52 -0.21 0.98 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.16 1.80 2.37 -52.48 -0.12 1.68 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.51 7.82 -52.49 -0.41 1.10 16 38 H 0.22 0.68 8.06 -52.48 -0.42 0.25 16 39 H 0.14 3.06 7.58 -52.49 -0.40 2.66 16 40 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 2.12 6.54 -51.93 -0.34 1.78 16 43 H 0.24 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -39.99 365.22 -11.40 -51.39 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.83 Total: -0.66 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -5.39 Total: 6.83 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: 0.28 Total: -71.88 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.05 Total: -10.50 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.02 Total: 19.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.99 -11.40 -51.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951121687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.196 kcal (2) G-P(sol) polarization free energy of solvation -39.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 227.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 215.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds