Wall clock time and date at job start Wed Apr 1 2020 00:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46990 * 2 1 4 4 C 1.34776 * 119.99896 * 253.72434 * 3 2 1 5 5 O 1.21546 * 119.99963 * 184.56217 * 4 3 2 6 6 C 1.47864 * 119.99910 * 4.56818 * 4 3 2 7 7 C 1.39659 * 120.08882 * 22.63843 * 6 4 3 8 8 C 1.38014 * 120.09996 * 179.97438 * 7 6 4 9 9 C 1.38162 * 120.27083 * 0.02562 * 8 7 6 10 10 C 1.39410 * 120.17289 * 0.02562 * 9 8 7 11 11 C 1.48422 * 120.05260 * 179.97438 * 10 9 8 12 12 N 1.33972 * 125.64788 * 359.97438 * 11 10 9 13 13 C 1.30679 * 109.77989 * 180.02562 * 12 11 10 14 14 N 1.34514 * 108.29330 * 359.97438 * 13 12 11 15 15 H 0.97004 * 126.74380 * 180.02562 * 14 13 12 16 16 N 1.31489 * 125.65099 * 179.69504 * 11 10 9 17 17 C 1.39100 * 119.89952 * 359.68154 * 10 9 8 18 18 C 1.46497 * 120.00066 * 73.73306 * 3 2 1 19 19 C 1.53942 * 113.74147 * 141.25644 * 18 3 2 20 20 N 1.47813 * 86.03625 * 90.88400 * 19 18 3 21 21 C 1.36941 * 134.45544 * 204.64906 * 20 19 18 22 22 H 1.07990 * 120.00184 * 174.00324 * 21 20 19 23 23 C 1.38816 * 119.99782 * 354.00132 * 21 20 19 24 24 N 1.31625 * 120.00051 * 4.93316 * 23 21 20 25 25 Si 1.86796 * 119.99835 * 184.93444 * 23 21 20 26 26 H 1.48501 * 109.47115 * 95.00030 * 25 23 21 27 27 H 1.48503 * 109.47000 * 214.99685 * 25 23 21 28 28 H 1.48496 * 109.47236 * 334.99773 * 25 23 21 29 29 C 1.47575 * 91.05454 * 24.54817 * 20 19 18 30 30 H 1.08993 * 109.47316 * 300.00450 * 1 2 3 31 31 H 1.09001 * 109.46800 * 60.00517 * 1 2 3 32 32 H 1.08996 * 109.47529 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47316 * 239.99550 * 2 1 3 34 34 H 1.09000 * 109.46666 * 120.00015 * 2 1 3 35 35 H 1.08004 * 119.94727 * 359.97438 * 7 6 4 36 36 H 1.07997 * 119.86475 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.91830 * 180.02562 * 9 8 7 38 38 H 1.08009 * 125.85497 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.13461 * 180.29729 * 17 10 9 40 40 H 1.08999 * 112.94647 * 9.66291 * 18 3 2 41 41 H 1.09004 * 113.76613 * 205.14294 * 19 18 3 42 42 H 1.08996 * 113.77366 * 336.54086 * 19 18 3 43 43 H 0.97001 * 119.99636 * 179.97438 * 24 23 21 44 44 H 1.09000 * 113.77362 * 221.15906 * 29 20 19 45 45 H 1.09001 * 113.77203 * 89.75641 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5513 1.9075 -1.1204 5 8 3.0317 3.0238 -1.0986 6 6 2.5516 1.1270 -2.3763 7 6 1.6287 0.0949 -2.5593 8 6 1.6284 -0.6335 -3.7316 9 6 2.5398 -0.3472 -4.7297 10 6 3.4668 0.6799 -4.5585 11 6 4.4451 0.9848 -5.6322 12 7 4.5389 0.3477 -6.8070 13 6 5.5060 0.8673 -7.5159 14 7 6.0628 1.8637 -6.8042 15 1 6.8023 2.4290 -7.0774 16 7 5.3599 1.9284 -5.5901 17 6 3.4695 1.4226 -3.3823 18 6 1.9274 2.1903 1.2179 19 6 3.1495 3.0965 1.4527 20 7 2.4063 4.1225 0.6912 21 6 2.7673 5.2193 -0.0450 22 1 2.0193 5.7698 -0.5961 23 6 4.0947 5.6237 -0.0826 24 7 5.0206 4.8987 0.5086 25 14 4.5669 7.1968 -0.9724 26 1 4.6224 8.3179 -0.0001 27 1 5.8985 7.0258 -1.6071 28 1 3.5554 7.4973 -2.0172 29 6 1.1200 3.4890 1.0404 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.9142 -0.1336 -1.7823 36 1 0.9127 -1.4305 -3.8694 37 1 2.5342 -0.9205 -5.6449 38 1 5.8060 0.5515 -8.5042 39 1 4.1828 2.2222 -3.2477 40 1 1.6373 1.6094 2.0933 41 1 3.3093 3.3561 2.4992 42 1 4.0556 2.7496 0.9560 43 1 5.9482 5.1811 0.4819 44 1 0.4087 3.4547 0.2152 45 1 0.6823 3.8642 1.9655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951121687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:34 Heat of formation + Delta-G solvation = 188.420965 kcal Electronic energy + Delta-G solvation = -30246.458992 eV Core-core repulsion = 26270.009945 eV Total energy + Delta-G solvation = -3976.449047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.08977 -41.71142 -39.87702 -37.83262 -36.80297 -34.27746 -33.82815 -32.89850 -31.93708 -31.39469 -30.70141 -29.17255 -26.45717 -25.86159 -25.01093 -24.48586 -23.72396 -23.13240 -21.95588 -21.41550 -19.66255 -19.03474 -18.62747 -17.88227 -17.74352 -16.85133 -16.71006 -16.53969 -16.14373 -16.08689 -15.81090 -15.51389 -15.24356 -14.86884 -14.70868 -14.42359 -14.11734 -13.99938 -13.75754 -13.26517 -13.18655 -13.18374 -12.92672 -12.80289 -12.62938 -12.47785 -12.33757 -12.13043 -11.88734 -11.81441 -11.52925 -11.37423 -11.26770 -11.19633 -11.06424 -10.69675 -10.13947 -9.89435 -9.49948 -9.27503 -8.43706 -7.69154 -4.90820 -0.25164 0.12755 0.82310 1.35080 1.38774 1.45061 1.72284 1.80418 2.19777 2.32966 2.56429 2.97820 2.98796 3.49411 3.53171 3.57877 3.76546 3.92433 3.97833 4.01771 4.15111 4.22524 4.36697 4.46990 4.49051 4.54572 4.67948 4.69170 4.81110 4.86472 4.93173 4.97103 5.05833 5.10420 5.11481 5.13226 5.34115 5.38299 5.40016 5.44423 5.46052 5.55477 5.66872 5.88786 6.08070 6.20118 6.20669 6.78740 6.96265 7.11115 7.77638 7.85916 8.80350 9.50410 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008891 B = 0.004806 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.485696 B = 5825.026998 C = 8551.889336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.068 3.932 3 N -0.594 5.594 4 C 0.500 3.500 5 O -0.474 6.474 6 C -0.139 4.139 7 C -0.100 4.100 8 C -0.115 4.115 9 C -0.054 4.054 10 C -0.042 4.042 11 C 0.255 3.745 12 N -0.558 5.558 13 C 0.283 3.717 14 N -0.478 5.478 15 H 0.458 0.542 16 N -0.355 5.355 17 C -0.057 4.057 18 C 0.127 3.873 19 C 0.156 3.844 20 N -0.607 5.607 21 C -0.164 4.164 22 H 0.056 0.944 23 C -0.062 4.062 24 N -0.949 5.949 25 Si 0.949 3.051 26 H -0.286 1.286 27 H -0.305 1.305 28 H -0.281 1.281 29 C 0.105 3.895 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.190 0.810 36 H 0.184 0.816 37 H 0.157 0.843 38 H 0.286 0.714 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.022 0.978 42 H 0.029 0.971 43 H 0.232 0.768 44 H 0.035 0.965 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.678 -20.556 -12.480 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.052 4.052 3 N -0.329 5.329 4 C 0.286 3.714 5 O -0.344 6.344 6 C -0.142 4.142 7 C -0.117 4.117 8 C -0.132 4.132 9 C -0.074 4.074 10 C -0.045 4.045 11 C -0.025 4.025 12 N -0.287 5.287 13 C -0.015 4.015 14 N -0.197 5.197 15 H 0.306 0.694 16 N -0.186 5.186 17 C -0.078 4.078 18 C 0.022 3.978 19 C 0.030 3.970 20 N -0.333 5.333 21 C -0.293 4.293 22 H 0.074 0.926 23 C -0.254 4.254 24 N -0.601 5.601 25 Si 0.781 3.219 26 H -0.214 1.214 27 H -0.233 1.233 28 H -0.207 1.207 29 C -0.021 4.021 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.207 0.793 36 H 0.201 0.799 37 H 0.175 0.825 38 H 0.301 0.699 39 H 0.108 0.892 40 H 0.148 0.852 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.314 -19.484 -12.150 24.098 hybrid contribution 1.813 2.234 -0.773 2.979 sum -5.501 -17.250 -12.923 22.244 Atomic orbital electron populations 1.22277 0.93923 1.04245 1.02609 1.22698 0.95933 0.81142 1.05452 1.47470 1.62055 1.14061 1.09279 1.19108 0.80697 0.87158 0.84464 1.91417 1.40566 1.18425 1.84039 1.20090 0.99751 0.99585 0.94798 1.22931 0.97389 0.91929 0.99495 1.21597 0.99143 1.00980 0.91493 1.21615 0.91722 0.93726 1.00353 1.17519 0.96852 0.99580 0.90560 1.22470 0.94851 0.91540 0.93616 1.70458 1.22779 1.31376 1.04084 1.27243 0.88619 0.85586 1.00042 1.48087 1.29981 1.29802 1.11861 0.69352 1.78368 1.11717 1.24178 1.04295 1.21033 0.97229 0.97085 0.92501 1.22705 0.96430 0.91258 0.87424 1.22363 0.95181 0.86735 0.92737 1.45783 1.02118 1.29651 1.55726 1.18738 0.92084 0.99933 1.18581 0.92646 1.25098 0.95945 1.01239 1.03124 1.70006 0.99022 1.39485 1.51571 0.85448 0.76577 0.81602 0.78255 1.21352 1.23317 1.20700 1.23175 0.89873 0.91369 0.97711 0.91737 0.92669 0.87873 0.86999 0.89336 0.79334 0.79894 0.82515 0.69909 0.89190 0.85189 0.96063 0.95285 0.95859 0.94659 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 9.06 71.98 0.65 -1.91 16 2 C 0.07 1.42 5.59 86.38 0.48 1.91 16 3 N -0.59 -20.43 2.77 -806.91 -2.24 -22.66 16 4 C 0.50 21.94 7.04 86.79 0.61 22.55 16 5 O -0.47 -27.32 10.29 -3.86 -0.04 -27.36 16 6 C -0.14 -5.03 5.60 -20.12 -0.11 -5.14 16 7 C -0.10 -2.36 7.51 22.56 0.17 -2.19 16 8 C -0.11 -2.10 10.02 22.20 0.22 -1.88 16 9 C -0.05 -1.27 9.68 22.53 0.22 -1.05 16 10 C -0.04 -1.39 5.87 -20.07 -0.12 -1.51 16 11 C 0.25 8.35 7.77 137.48 1.07 9.42 16 12 N -0.56 -14.01 10.81 -193.08 -2.09 -16.10 16 13 C 0.28 4.48 13.11 180.38 2.36 6.85 16 14 N -0.48 -9.98 7.44 -60.52 -0.45 -10.43 16 15 H 0.46 5.96 8.96 -213.10 -1.91 4.05 16 16 N -0.36 -12.35 12.42 -52.35 -0.65 -13.00 16 17 C -0.06 -2.29 9.22 22.75 0.21 -2.08 16 18 C 0.13 4.70 4.50 46.75 0.21 4.91 16 19 C 0.16 8.04 6.38 86.44 0.55 8.59 16 20 N -0.61 -33.96 2.09 -716.73 -1.50 -35.46 16 21 C -0.16 -10.41 8.55 84.03 0.72 -9.69 16 22 H 0.06 3.53 7.83 -2.92 -0.02 3.51 16 23 C -0.06 -4.07 5.30 84.86 0.45 -3.62 16 24 N -0.95 -64.61 11.49 21.65 0.25 -64.36 16 25 Si 0.95 53.17 29.56 68.60 2.03 55.20 16 26 H -0.29 -15.35 7.11 99.48 0.71 -14.64 16 27 H -0.31 -17.41 7.11 99.48 0.71 -16.70 16 28 H -0.28 -15.32 7.11 99.48 0.71 -14.61 16 29 C 0.10 4.44 8.42 86.49 0.73 5.16 16 30 H 0.06 1.02 8.05 -2.39 -0.02 1.01 16 31 H 0.05 0.93 7.03 -2.39 -0.02 0.92 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 2.17 4.01 -2.94 -0.01 2.16 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.19 3.38 2.37 -2.91 -0.01 3.37 16 36 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.16 2.97 7.82 -2.91 -0.02 2.95 16 38 H 0.29 0.38 8.06 -2.91 -0.02 0.36 16 39 H 0.09 4.49 7.58 -2.91 -0.02 4.47 16 40 H 0.13 3.53 8.08 -2.39 -0.02 3.51 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.10 16 42 H 0.03 1.75 6.54 -2.39 -0.02 1.74 16 43 H 0.23 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -101.17 365.22 2.88 -98.29 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -0.86 Total: 5.55 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: 8.43 Total: 30.33 kcal Atomic # 7 Polarization: -155.33 SS G_CDS: -6.68 Total: -162.00 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.04 Total: -27.36 kcal Atomic # 14 Polarization: 53.17 SS G_CDS: 2.03 Total: 55.20 kcal Total: -101.17 2.88 -98.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951121687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 286.714 kcal (2) G-P(sol) polarization free energy of solvation -101.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds