Wall clock time and date at job start Wed Apr 1 2020 00:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46955 * 2 1 4 4 C 1.34780 * 119.99899 * 253.97037 * 3 2 1 5 5 O 1.21548 * 120.00014 * 184.49247 * 4 3 2 6 6 C 1.47863 * 119.99965 * 4.48625 * 4 3 2 7 7 C 1.39613 * 120.10873 * 22.57008 * 6 4 3 8 8 C 1.37978 * 119.98686 * 179.97438 * 7 6 4 9 9 C 1.38258 * 120.21530 * 0.02562 * 8 7 6 10 10 C 1.38917 * 120.22843 * 0.02562 * 9 8 7 11 11 N 1.40222 * 119.99366 * 179.97438 * 10 9 8 12 12 C 1.34719 * 126.84460 * 5.00806 * 11 10 9 13 13 N 1.30855 * 108.03344 * 179.97438 * 12 11 10 14 14 C 1.33256 * 109.84482 * 0.02562 * 13 12 11 15 15 N 1.30758 * 108.99842 * 359.71041 * 14 13 12 16 16 C 1.38594 * 120.00799 * 359.70631 * 10 9 8 17 17 C 1.46501 * 120.00648 * 73.96661 * 3 2 1 18 18 C 1.53940 * 113.74845 * 141.25864 * 17 3 2 19 19 N 1.47810 * 86.03661 * 90.88191 * 18 17 3 20 20 C 1.36934 * 134.45770 * 204.64344 * 19 18 17 21 21 H 1.08006 * 120.00023 * 179.87232 * 20 19 18 22 22 C 1.38815 * 119.99990 * 359.87272 * 20 19 18 23 23 N 1.31618 * 119.99911 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99986 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47130 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47138 * 120.00048 * 24 22 20 27 27 H 1.48502 * 109.46919 * 240.00018 * 24 22 20 28 28 C 1.47580 * 91.05038 * 24.55399 * 19 18 17 29 29 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47528 * 300.00507 * 1 2 3 31 31 H 1.09009 * 109.46881 * 60.00812 * 1 2 3 32 32 H 1.08996 * 109.47107 * 239.99736 * 2 1 3 33 33 H 1.09003 * 109.46494 * 119.99010 * 2 1 3 34 34 H 1.08002 * 120.00938 * 0.02562 * 7 6 4 35 35 H 1.08001 * 119.88978 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.88647 * 179.97438 * 9 8 7 37 37 H 1.07996 * 125.98510 * 359.97438 * 12 11 10 38 38 H 1.07992 * 125.50331 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.10926 * 180.27839 * 16 10 9 40 40 H 1.09004 * 112.93928 * 9.66231 * 17 3 2 41 41 H 1.08989 * 113.77304 * 205.15219 * 18 17 3 42 42 H 1.09007 * 113.76656 * 336.54741 * 18 17 3 43 43 H 0.96997 * 119.99559 * 180.02562 * 23 22 20 44 44 H 1.08998 * 113.76834 * 221.15120 * 28 19 18 45 45 H 1.08997 * 113.77281 * 89.74993 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5468 1.9091 -1.1219 5 8 3.0261 3.0259 -1.1007 6 6 2.5436 1.1297 -2.3784 7 6 1.6227 0.0960 -2.5589 8 6 1.6216 -0.6294 -3.7327 9 6 2.5307 -0.3367 -4.7324 10 6 3.4516 0.6892 -4.5617 11 7 4.3718 0.9816 -5.5786 12 6 4.4256 0.4244 -6.8040 13 7 5.4245 0.9670 -7.4522 14 6 6.0290 1.8686 -6.6792 15 7 5.4173 1.9179 -5.5246 16 6 3.4574 1.4275 -3.3888 17 6 1.9321 2.1887 1.2193 18 6 3.1550 3.0947 1.4506 19 7 2.4089 4.1216 0.6933 20 6 2.7669 5.2195 -0.0427 21 1 2.0068 5.8258 -0.5128 22 6 4.1069 5.5530 -0.1846 23 7 5.0332 4.8144 0.3887 24 14 4.5954 7.0503 -1.1892 25 1 3.3757 7.7061 -1.7253 26 1 5.3332 8.0067 -0.3254 27 1 5.4657 6.6279 -2.3159 28 6 1.1240 3.4876 1.0467 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 0.9108 -0.1354 -1.7804 35 1 0.9088 -1.4290 -3.8705 36 1 2.5254 -0.9081 -5.6487 37 1 3.7608 -0.3368 -7.1848 38 1 6.8827 2.4660 -6.9626 39 1 4.1697 2.2284 -3.2562 40 1 1.6453 1.6066 2.0951 41 1 3.3190 3.3529 2.4967 42 1 4.0593 2.7484 0.9499 43 1 5.9695 5.0478 0.2898 44 1 0.4095 3.4545 0.2242 45 1 0.6899 3.8615 1.9741 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951719228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:50 Heat of formation + Delta-G solvation = 230.028882 kcal Electronic energy + Delta-G solvation = -30459.865022 eV Core-core repulsion = 26485.220230 eV Total energy + Delta-G solvation = -3974.644793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.40616 -40.46280 -38.79671 -36.33802 -35.66013 -33.95686 -31.88180 -31.66064 -30.92452 -30.06479 -29.45551 -27.22237 -24.69337 -24.50552 -24.24595 -23.04156 -22.86892 -21.70243 -21.35617 -20.22578 -18.76715 -17.40134 -16.98318 -16.62348 -16.27733 -15.94553 -15.60392 -15.20212 -14.73186 -14.51236 -14.35308 -14.22938 -14.03889 -13.64613 -13.55870 -13.38584 -13.15841 -12.80223 -12.38673 -12.35124 -12.18710 -11.77291 -11.52856 -11.35250 -11.22757 -11.08535 -10.99605 -10.66123 -10.54357 -10.39557 -10.22022 -10.00683 -9.99900 -9.58831 -9.25860 -9.08180 -8.75634 -8.43415 -8.29503 -7.82335 -6.38764 -5.41002 -2.66624 0.52990 1.02553 1.84441 2.06247 2.77528 3.28367 3.45565 3.57623 3.62413 3.65048 4.05641 4.08000 4.30528 4.57866 4.66888 4.72724 4.75230 4.88033 4.97159 5.13882 5.17583 5.27193 5.36886 5.39043 5.47292 5.66347 5.66919 5.74728 5.80083 5.83074 5.97750 6.04755 6.06091 6.20370 6.21765 6.24119 6.36359 6.39135 6.49508 6.59043 6.66911 6.90016 7.02259 7.40969 7.59836 7.86249 7.87636 8.10101 8.30976 9.16768 9.36133 10.08405 10.93117 11.78172 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009004 B = 0.005001 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.090191 B = 5597.330451 C = 8279.081908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 N -0.595 5.595 4 C 0.504 3.496 5 O -0.387 6.387 6 C -0.088 4.088 7 C -0.132 4.132 8 C -0.107 4.107 9 C -0.123 4.123 10 C 0.135 3.865 11 N -0.325 5.325 12 C 0.254 3.746 13 N -0.540 5.540 14 C 0.200 3.800 15 N -0.300 5.300 16 C -0.056 4.056 17 C 0.097 3.903 18 C 0.159 3.841 19 N -0.582 5.582 20 C -0.180 4.180 21 H 0.067 0.933 22 C 0.003 3.997 23 N -0.918 5.918 24 Si 0.895 3.105 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.294 1.294 28 C 0.103 3.897 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.168 0.832 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.221 0.779 38 H 0.223 0.777 39 H 0.152 0.848 40 H 0.078 0.922 41 H 0.028 0.972 42 H 0.079 0.921 43 H 0.244 0.756 44 H 0.037 0.963 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -18.051 -7.610 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.046 4.046 3 N -0.332 5.332 4 C 0.287 3.713 5 O -0.251 6.251 6 C -0.092 4.092 7 C -0.150 4.150 8 C -0.125 4.125 9 C -0.145 4.145 10 C 0.043 3.957 11 N -0.109 5.109 12 C -0.041 4.041 13 N -0.267 5.267 14 C -0.102 4.102 15 N -0.125 5.125 16 C -0.076 4.076 17 C -0.008 4.008 18 C 0.033 3.967 19 N -0.308 5.308 20 C -0.307 4.307 21 H 0.085 0.915 22 C -0.193 4.193 23 N -0.567 5.567 24 Si 0.728 3.272 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.221 1.221 28 C -0.025 4.025 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.185 0.815 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.237 0.763 38 H 0.239 0.761 39 H 0.169 0.831 40 H 0.096 0.904 41 H 0.045 0.955 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.696 -16.707 -7.528 19.876 hybrid contribution 0.100 0.630 -0.646 0.908 sum -7.596 -16.077 -8.174 19.570 Atomic orbital electron populations 1.22323 0.96463 1.01852 1.03066 1.22302 0.94008 0.84483 1.03834 1.47291 1.63148 1.12136 1.10660 1.18401 0.82529 0.87691 0.82696 1.91511 1.36461 1.14763 1.82378 1.20374 0.96260 0.96517 0.96032 1.22705 0.99526 0.94415 0.98379 1.20921 0.98463 1.00444 0.92698 1.20864 0.95864 0.96927 1.00800 1.17441 0.91569 0.98300 0.88437 1.47764 1.22924 1.28754 1.11451 1.26121 0.97133 0.98377 0.82519 1.70602 1.09528 1.13467 1.33067 1.26203 1.00102 0.96522 0.87385 1.78381 1.00708 1.10396 1.22995 1.21113 0.98353 0.98193 0.89970 1.23056 1.01307 0.91400 0.85007 1.22516 0.94842 0.85238 0.94125 1.45571 0.99111 1.30150 1.55968 1.18624 0.91093 0.99315 1.21715 0.91481 1.24449 0.95522 0.98523 1.00770 1.69780 0.98953 1.39456 1.48511 0.86291 0.78047 0.82960 0.79947 1.21051 1.22405 1.22115 1.22973 0.91616 0.90728 0.97173 0.91763 0.91519 0.91921 0.87994 0.91429 0.81506 0.84546 0.85168 0.76271 0.76121 0.83060 0.90416 0.95480 0.90299 0.94594 0.94497 0.94663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.06 37.16 0.34 -1.26 16 2 C 0.08 0.86 5.59 -4.04 -0.02 0.84 16 3 N -0.60 -9.93 2.77 -169.01 -0.47 -10.40 16 4 C 0.50 10.07 7.04 -12.32 -0.09 9.98 16 5 O -0.39 -10.00 10.08 5.32 0.05 -9.95 16 6 C -0.09 -1.42 5.60 -104.99 -0.59 -2.01 16 7 C -0.13 -1.51 7.51 -39.16 -0.29 -1.80 16 8 C -0.11 -0.95 10.02 -39.67 -0.40 -1.35 16 9 C -0.12 -1.20 9.47 -39.32 -0.37 -1.57 16 10 C 0.13 1.87 6.68 -83.63 -0.56 1.31 16 11 N -0.32 -4.63 3.82 -11.84 -0.05 -4.68 16 12 C 0.25 2.85 11.97 -90.37 -1.08 1.77 16 13 N -0.54 -7.06 11.19 -15.75 -0.18 -7.24 16 14 C 0.20 2.72 13.03 -91.76 -1.20 1.53 16 15 N -0.30 -4.98 12.06 29.30 0.35 -4.62 16 16 C -0.06 -0.96 9.22 -39.00 -0.36 -1.32 16 17 C 0.10 1.78 4.50 -70.15 -0.32 1.46 16 18 C 0.16 3.83 6.46 -2.84 -0.02 3.81 16 19 N -0.58 -15.28 2.10 -177.91 -0.37 -15.65 16 20 C -0.18 -5.32 8.72 -15.06 -0.13 -5.45 16 21 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 22 C 0.00 0.08 5.01 -17.43 -0.09 0.00 16 23 N -0.92 -28.75 11.39 55.49 0.63 -28.12 16 24 Si 0.90 24.20 29.55 -169.99 -5.02 19.18 16 25 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 27 H -0.29 -8.12 7.11 56.52 0.40 -7.72 16 28 C 0.10 2.13 8.42 -2.97 -0.02 2.11 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 31 H 0.06 0.60 7.03 -51.92 -0.36 0.24 16 32 H 0.10 1.05 4.02 -52.47 -0.21 0.83 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.17 1.60 2.36 -52.49 -0.12 1.47 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.78 6.82 -52.49 -0.36 0.42 16 37 H 0.22 1.31 7.12 -52.49 -0.37 0.93 16 38 H 0.22 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.15 3.20 7.50 -52.49 -0.39 2.81 16 40 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 41 H 0.03 0.66 8.14 -51.94 -0.42 0.24 16 42 H 0.08 2.18 6.37 -51.93 -0.33 1.85 16 43 H 0.24 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -38.65 362.88 -10.28 -48.92 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.50 Total: -0.96 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -5.20 Total: 8.05 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -0.08 Total: -70.71 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.05 Total: -9.95 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.02 Total: 19.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.65 -10.28 -48.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951719228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 278.952 kcal (2) G-P(sol) polarization free energy of solvation -38.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 240.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 230.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds