Wall clock time and date at job start Wed Apr 1 2020 00:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46955 * 2 1 4 4 C 1.34780 * 119.99899 * 253.97037 * 3 2 1 5 5 O 1.21548 * 120.00014 * 184.49247 * 4 3 2 6 6 C 1.47863 * 119.99965 * 4.48625 * 4 3 2 7 7 C 1.39613 * 120.10873 * 22.57008 * 6 4 3 8 8 C 1.37978 * 119.98686 * 179.97438 * 7 6 4 9 9 C 1.38258 * 120.21530 * 0.02562 * 8 7 6 10 10 C 1.38917 * 120.22843 * 0.02562 * 9 8 7 11 11 N 1.40222 * 119.99366 * 179.97438 * 10 9 8 12 12 C 1.34719 * 126.84460 * 5.00806 * 11 10 9 13 13 N 1.30855 * 108.03344 * 179.97438 * 12 11 10 14 14 C 1.33256 * 109.84482 * 0.02562 * 13 12 11 15 15 N 1.30758 * 108.99842 * 359.71041 * 14 13 12 16 16 C 1.38594 * 120.00799 * 359.70631 * 10 9 8 17 17 C 1.46501 * 120.00648 * 73.96661 * 3 2 1 18 18 C 1.53940 * 113.74845 * 141.25864 * 17 3 2 19 19 N 1.47810 * 86.03661 * 90.88191 * 18 17 3 20 20 C 1.36934 * 134.45770 * 204.64344 * 19 18 17 21 21 H 1.08006 * 120.00023 * 179.87232 * 20 19 18 22 22 C 1.38815 * 119.99990 * 359.87272 * 20 19 18 23 23 N 1.31618 * 119.99911 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99986 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47130 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47138 * 120.00048 * 24 22 20 27 27 H 1.48502 * 109.46919 * 240.00018 * 24 22 20 28 28 C 1.47580 * 91.05038 * 24.55399 * 19 18 17 29 29 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47528 * 300.00507 * 1 2 3 31 31 H 1.09009 * 109.46881 * 60.00812 * 1 2 3 32 32 H 1.08996 * 109.47107 * 239.99736 * 2 1 3 33 33 H 1.09003 * 109.46494 * 119.99010 * 2 1 3 34 34 H 1.08002 * 120.00938 * 0.02562 * 7 6 4 35 35 H 1.08001 * 119.88978 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.88647 * 179.97438 * 9 8 7 37 37 H 1.07996 * 125.98510 * 359.97438 * 12 11 10 38 38 H 1.07992 * 125.50331 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.10926 * 180.27839 * 16 10 9 40 40 H 1.09004 * 112.93928 * 9.66231 * 17 3 2 41 41 H 1.08989 * 113.77304 * 205.15219 * 18 17 3 42 42 H 1.09007 * 113.76656 * 336.54741 * 18 17 3 43 43 H 0.96997 * 119.99559 * 180.02562 * 23 22 20 44 44 H 1.08998 * 113.76834 * 221.15120 * 28 19 18 45 45 H 1.08997 * 113.77281 * 89.74993 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5468 1.9091 -1.1219 5 8 3.0261 3.0259 -1.1007 6 6 2.5436 1.1297 -2.3784 7 6 1.6227 0.0960 -2.5589 8 6 1.6216 -0.6294 -3.7327 9 6 2.5307 -0.3367 -4.7324 10 6 3.4516 0.6892 -4.5617 11 7 4.3718 0.9816 -5.5786 12 6 4.4256 0.4244 -6.8040 13 7 5.4245 0.9670 -7.4522 14 6 6.0290 1.8686 -6.6792 15 7 5.4173 1.9179 -5.5246 16 6 3.4574 1.4275 -3.3888 17 6 1.9321 2.1887 1.2193 18 6 3.1550 3.0947 1.4506 19 7 2.4089 4.1216 0.6933 20 6 2.7669 5.2195 -0.0427 21 1 2.0068 5.8258 -0.5128 22 6 4.1069 5.5530 -0.1846 23 7 5.0332 4.8144 0.3887 24 14 4.5954 7.0503 -1.1892 25 1 3.3757 7.7061 -1.7253 26 1 5.3332 8.0067 -0.3254 27 1 5.4657 6.6279 -2.3159 28 6 1.1240 3.4876 1.0467 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 0.9108 -0.1354 -1.7804 35 1 0.9088 -1.4290 -3.8705 36 1 2.5254 -0.9081 -5.6487 37 1 3.7608 -0.3368 -7.1848 38 1 6.8827 2.4660 -6.9626 39 1 4.1697 2.2284 -3.2562 40 1 1.6453 1.6066 2.0951 41 1 3.3190 3.3529 2.4967 42 1 4.0593 2.7484 0.9499 43 1 5.9695 5.0478 0.2898 44 1 0.4095 3.4545 0.2242 45 1 0.6899 3.8615 1.9741 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951719228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:50 Heat of formation + Delta-G solvation = 204.954331 kcal Electronic energy + Delta-G solvation = -30460.952336 eV Core-core repulsion = 26485.220230 eV Total energy + Delta-G solvation = -3975.732107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.39518 -41.76316 -40.04645 -37.95087 -36.91678 -35.03933 -33.93471 -32.72477 -31.96033 -31.30987 -30.43333 -29.17740 -26.47770 -25.90689 -25.27696 -24.49909 -23.88806 -22.79033 -22.45742 -21.58688 -20.03427 -18.69731 -18.65207 -17.91078 -17.49017 -16.97057 -16.83173 -16.72677 -16.29212 -16.03626 -15.70801 -15.31392 -15.25973 -15.15537 -14.84482 -14.48828 -14.41326 -14.10433 -13.98704 -13.33129 -13.30611 -13.20330 -12.99219 -12.86173 -12.62950 -12.46631 -12.39124 -12.25435 -12.06734 -11.89694 -11.60297 -11.43550 -11.31551 -11.23326 -11.07708 -10.74256 -10.18911 -10.01053 -9.40174 -9.29836 -8.46902 -7.71178 -4.92764 -0.39834 -0.02030 0.90558 1.13484 1.32107 1.37085 1.42668 1.79507 2.14090 2.17881 2.53641 2.84523 3.26910 3.33305 3.49818 3.55239 3.67932 3.76955 3.89823 3.96223 4.00893 4.06552 4.27129 4.35194 4.45999 4.47434 4.53082 4.67252 4.70806 4.83283 4.84458 4.92809 4.95599 5.05669 5.10184 5.18387 5.25487 5.28031 5.29096 5.34354 5.40508 5.53498 5.62341 5.64939 5.99325 6.05916 6.18630 6.75720 6.87702 7.08841 7.74536 7.84767 8.77674 9.48058 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009004 B = 0.005001 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.090191 B = 5597.330451 C = 8279.081908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.068 3.932 3 N -0.593 5.593 4 C 0.494 3.506 5 O -0.469 6.469 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.082 4.082 9 C -0.099 4.099 10 C 0.121 3.879 11 N -0.338 5.338 12 C 0.271 3.729 13 N -0.559 5.559 14 C 0.202 3.798 15 N -0.369 5.369 16 C -0.094 4.094 17 C 0.128 3.872 18 C 0.152 3.848 19 N -0.608 5.608 20 C -0.167 4.167 21 H 0.057 0.943 22 C -0.056 4.056 23 N -0.946 5.946 24 Si 0.945 3.055 25 H -0.273 1.273 26 H -0.291 1.291 27 H -0.311 1.311 28 C 0.105 3.895 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.192 0.808 35 H 0.198 0.802 36 H 0.185 0.815 37 H 0.279 0.721 38 H 0.244 0.756 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.021 0.979 42 H 0.032 0.968 43 H 0.231 0.769 44 H 0.036 0.964 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.728 -22.989 -8.931 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.053 4.053 3 N -0.328 5.328 4 C 0.279 3.721 5 O -0.338 6.338 6 C -0.118 4.118 7 C -0.137 4.137 8 C -0.100 4.100 9 C -0.120 4.120 10 C 0.030 3.970 11 N -0.122 5.122 12 C -0.023 4.023 13 N -0.285 5.285 14 C -0.100 4.100 15 N -0.195 5.195 16 C -0.115 4.115 17 C 0.023 3.977 18 C 0.026 3.974 19 N -0.333 5.333 20 C -0.297 4.297 21 H 0.075 0.925 22 C -0.248 4.248 23 N -0.598 5.598 24 Si 0.777 3.223 25 H -0.198 1.198 26 H -0.218 1.218 27 H -0.240 1.240 28 C -0.021 4.021 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.209 0.791 35 H 0.215 0.785 36 H 0.202 0.798 37 H 0.294 0.706 38 H 0.260 0.740 39 H 0.104 0.896 40 H 0.148 0.852 41 H 0.039 0.961 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.950 -21.702 -8.824 26.299 hybrid contribution 1.294 1.986 -0.317 2.391 sum -10.656 -19.716 -9.141 24.204 Atomic orbital electron populations 1.22284 0.93834 1.04317 1.02628 1.22723 0.95981 0.81035 1.05531 1.47463 1.62169 1.14123 1.09041 1.19154 0.80995 0.87337 0.84599 1.91456 1.40030 1.18362 1.83991 1.20068 0.98668 0.98846 0.94221 1.22953 0.97937 0.92477 1.00334 1.21616 0.97935 1.00038 0.90382 1.21526 0.93140 0.94474 1.02848 1.17732 0.92750 0.99278 0.87289 1.47826 1.22810 1.28973 1.12635 1.27268 0.96509 0.97685 0.80808 1.70642 1.10558 1.13939 1.33395 1.26724 1.00202 0.96378 0.86689 1.78348 1.02960 1.13101 1.25117 1.20728 0.99081 0.98698 0.93039 1.22679 0.96338 0.91269 0.87409 1.22427 0.95428 0.86874 0.92684 1.45792 1.02180 1.29544 1.55827 1.18761 0.90768 0.99424 1.20728 0.92520 1.25018 0.95860 1.01116 1.02760 1.69970 0.98262 1.40990 1.50583 0.85466 0.77669 0.80771 0.78367 1.19804 1.21839 1.24004 1.23173 0.89863 0.91336 0.97721 0.87735 0.91915 0.92513 0.86767 0.89451 0.79150 0.78538 0.79810 0.70564 0.73984 0.89586 0.85164 0.96148 0.94952 0.95948 0.94601 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.06 71.98 0.65 -1.51 16 2 C 0.07 1.26 5.59 86.38 0.48 1.74 16 3 N -0.59 -19.36 2.77 -806.91 -2.24 -21.60 16 4 C 0.49 20.82 7.04 86.79 0.61 21.43 16 5 O -0.47 -26.51 10.08 -3.87 -0.04 -26.54 16 6 C -0.11 -3.79 5.60 -20.10 -0.11 -3.90 16 7 C -0.12 -2.28 7.51 22.54 0.17 -2.12 16 8 C -0.08 -0.92 10.02 22.21 0.22 -0.69 16 9 C -0.10 -1.41 9.47 22.44 0.21 -1.19 16 10 C 0.12 3.31 6.68 38.05 0.25 3.56 16 11 N -0.34 -9.67 3.82 -191.37 -0.73 -10.40 16 12 C 0.27 5.39 11.97 180.26 2.16 7.55 16 13 N -0.56 -14.03 11.19 -203.74 -2.28 -16.31 16 14 C 0.20 5.74 13.03 180.75 2.35 8.10 16 15 N -0.37 -13.30 12.06 -61.22 -0.74 -14.04 16 16 C -0.09 -3.54 9.22 22.65 0.21 -3.33 16 17 C 0.13 4.59 4.50 46.75 0.21 4.80 16 18 C 0.15 7.70 6.46 86.44 0.56 8.26 16 19 N -0.61 -33.43 2.10 -716.78 -1.50 -34.93 16 20 C -0.17 -10.52 8.72 84.03 0.73 -9.79 16 21 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 22 C -0.06 -3.61 5.01 84.86 0.42 -3.18 16 23 N -0.95 -64.21 11.39 21.65 0.25 -63.96 16 24 Si 0.94 53.39 29.55 68.60 2.03 55.42 16 25 H -0.27 -14.66 7.11 99.48 0.71 -13.95 16 26 H -0.29 -15.96 7.11 99.48 0.71 -15.26 16 27 H -0.31 -18.26 7.11 99.48 0.71 -17.55 16 28 C 0.11 4.33 8.42 86.49 0.73 5.06 16 29 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 0.89 8.05 -2.39 -0.02 0.87 16 31 H 0.06 0.81 7.03 -2.38 -0.02 0.79 16 32 H 0.11 1.86 4.02 -2.89 -0.01 1.85 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.19 2.66 2.36 -2.91 -0.01 2.66 16 35 H 0.20 0.07 8.06 -2.91 -0.02 0.05 16 36 H 0.18 0.64 6.82 -2.91 -0.02 0.62 16 37 H 0.28 1.60 7.12 -2.91 -0.02 1.58 16 38 H 0.24 5.13 8.06 -2.91 -0.02 5.11 16 39 H 0.09 4.30 7.50 -2.91 -0.02 4.28 16 40 H 0.13 3.38 8.08 -2.38 -0.02 3.36 16 41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.03 1.93 6.37 -2.38 -0.02 1.92 16 43 H 0.23 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -102.02 362.88 5.65 -96.37 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 1.03 Total: 1.21 kcal Atomic # 6 Polarization: 24.91 SS G_CDS: 9.87 Total: 34.78 kcal Atomic # 7 Polarization: -153.99 SS G_CDS: -7.24 Total: -161.23 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.04 Total: -26.54 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 2.03 Total: 55.42 kcal Total: -102.02 5.65 -96.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951719228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 301.326 kcal (2) G-P(sol) polarization free energy of solvation -102.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds