Wall clock time and date at job start Wed Apr 1 2020 00:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46851 * 2 1 4 4 C 1.34779 * 119.99556 * 98.30302 * 3 2 1 5 5 O 1.21511 * 119.99251 * 186.34479 * 4 3 2 6 6 C 1.48154 * 120.00113 * 6.34936 * 4 3 2 7 7 C 1.39942 * 120.89390 * 331.12128 * 6 4 3 8 8 C 1.38053 * 119.13834 * 180.02562 * 7 6 4 9 9 N 1.31848 * 120.98280 * 359.72833 * 8 7 6 10 10 C 1.32231 * 121.96816 * 0.56964 * 9 8 7 11 11 N 1.39840 * 119.62482 * 179.70611 * 10 9 8 12 12 C 1.35834 * 126.09827 * 359.72742 * 11 10 9 13 13 C 1.35286 * 107.61267 * 180.02562 * 12 11 10 14 14 C 1.39958 * 107.96754 * 359.97438 * 13 12 11 15 15 N 1.30823 * 108.36814 * 0.26881 * 14 13 12 16 16 C 1.38917 * 120.75187 * 359.43029 * 10 9 8 17 17 C 1.46495 * 119.99962 * 278.29871 * 3 2 1 18 18 C 1.53943 * 113.74213 * 222.90503 * 17 3 2 19 19 N 1.47813 * 86.03619 * 222.08807 * 18 17 3 20 20 C 1.36942 * 134.45528 * 204.64535 * 19 18 17 21 21 H 1.07993 * 120.00067 * 179.86552 * 20 19 18 22 22 C 1.38814 * 119.99778 * 359.86421 * 20 19 18 23 23 N 1.31613 * 120.00342 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99780 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47324 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47263 * 120.00113 * 24 22 20 27 27 H 1.48503 * 109.47227 * 240.00090 * 24 22 20 28 28 C 1.47572 * 91.05235 * 24.54779 * 19 18 17 29 29 H 1.08997 * 109.47322 * 59.99537 * 1 2 3 30 30 H 1.09003 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47007 * 299.99941 * 1 2 3 32 32 H 1.08996 * 109.46611 * 239.99776 * 2 1 3 33 33 H 1.09001 * 109.46647 * 120.00233 * 2 1 3 34 34 H 1.07997 * 120.42921 * 0.02562 * 7 6 4 35 35 H 1.08004 * 119.50854 * 179.97438 * 8 7 6 36 36 H 1.08001 * 126.19727 * 0.02562 * 12 11 10 37 37 H 1.07995 * 126.01595 * 179.97438 * 13 12 11 38 38 H 1.07999 * 125.81725 * 180.02562 * 14 13 12 39 39 H 1.08001 * 120.52722 * 180.25356 * 16 10 9 40 40 H 1.08999 * 112.94750 * 354.49722 * 17 3 2 41 41 H 1.09000 * 113.77110 * 336.35069 * 18 17 3 42 42 H 1.08999 * 113.77336 * 107.74739 * 18 17 3 43 43 H 0.97001 * 120.00757 * 179.97438 * 23 22 20 44 44 H 1.08995 * 113.77473 * 221.15001 * 28 19 18 45 45 H 1.09006 * 113.76775 * 89.75616 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4018 1.9604 1.1550 5 8 2.6969 3.1389 1.1750 6 6 2.4637 1.1599 2.4002 7 6 1.6217 0.0582 2.5888 8 6 1.7096 -0.6618 3.7634 9 7 2.5754 -0.3289 4.7004 10 6 3.3864 0.7072 4.5680 11 7 4.2817 1.0199 5.5957 12 6 4.4157 0.3524 6.7711 13 6 5.3846 0.9705 7.4848 14 6 5.8591 2.0470 6.7266 15 7 5.1966 2.0808 5.5990 16 6 3.3631 1.4850 3.4173 17 6 2.0898 2.1329 -1.2554 18 6 3.3832 2.9525 -1.4143 19 7 2.5158 4.0272 -1.9412 20 6 2.7120 5.0963 -2.7742 21 1 1.8886 5.7528 -3.0132 22 6 3.9694 5.3360 -3.3112 23 7 4.9729 4.5356 -3.0203 24 14 4.2369 6.7939 -4.4480 25 1 2.9590 7.5315 -4.6162 26 1 5.2577 7.6987 -3.8610 27 1 4.7064 6.3103 -5.7713 28 6 1.3537 3.4842 -1.2115 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.9123 -0.2250 1.8253 35 1 1.0624 -1.5130 3.9153 36 1 3.8510 -0.5149 7.0801 37 1 5.7309 0.6838 8.4667 38 1 6.6367 2.7351 7.0236 39 1 4.0299 2.3279 3.3113 40 1 1.8440 1.5274 -2.1278 41 1 3.8650 3.2007 -0.4687 42 1 4.0747 2.5436 -2.1510 43 1 5.8514 4.7029 -3.3959 44 1 0.4278 3.4991 -1.7864 45 1 1.2380 3.8891 -0.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951722837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:19 Heat of formation + Delta-G solvation = 172.444842 kcal Electronic energy + Delta-G solvation = -29364.423684 eV Core-core repulsion = 25387.281860 eV Total energy + Delta-G solvation = -3977.141824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.70935 -42.02255 -40.68929 -38.64845 -37.21822 -34.80623 -34.18743 -33.58442 -31.75677 -31.34993 -30.33939 -29.44812 -26.63130 -26.56424 -25.35307 -24.69820 -24.17773 -22.62853 -22.09397 -21.62944 -20.42562 -19.04644 -18.80804 -18.02620 -17.82073 -17.49958 -17.07306 -16.73508 -16.40479 -16.12379 -16.09860 -15.65827 -15.34988 -15.15174 -14.80551 -14.61941 -14.39669 -14.23763 -14.12182 -13.79007 -13.71436 -13.41152 -13.03509 -12.87000 -12.83998 -12.72062 -12.48758 -12.17204 -12.03676 -11.86925 -11.83038 -11.53667 -11.45161 -11.36616 -11.10947 -10.89532 -10.52609 -10.24533 -9.64198 -9.34372 -8.93131 -7.93890 -5.27850 -0.62388 -0.33395 0.95392 1.03563 1.40433 1.43682 1.53767 1.63361 1.79706 1.82511 2.45494 2.60381 3.04849 3.24662 3.29107 3.40497 3.46624 3.70614 3.76509 3.82782 3.96381 4.03493 4.11145 4.21440 4.35568 4.36215 4.51259 4.54856 4.59447 4.64494 4.70992 4.79964 4.83950 4.89672 4.97943 5.01094 5.01916 5.19590 5.22291 5.27870 5.44579 5.47477 5.55276 5.79139 5.87553 5.99812 6.29611 6.34108 6.73351 6.86966 7.04369 7.56167 8.52961 9.23630 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.002954 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.463215 B = 9475.029683 C =11326.767923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.058 3.942 3 N -0.584 5.584 4 C 0.542 3.458 5 O -0.558 6.558 6 C -0.063 4.063 7 C -0.169 4.169 8 C 0.148 3.852 9 N -0.495 5.495 10 C 0.357 3.643 11 N -0.344 5.344 12 C 0.068 3.932 13 C -0.257 4.257 14 C 0.062 3.938 15 N -0.339 5.339 16 C -0.141 4.141 17 C 0.129 3.871 18 C 0.152 3.848 19 N -0.632 5.632 20 C -0.234 4.234 21 H 0.085 0.915 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.985 3.015 25 H -0.263 1.263 26 H -0.296 1.296 27 H -0.284 1.284 28 C 0.113 3.887 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.208 0.792 35 H 0.231 0.769 36 H 0.207 0.793 37 H 0.192 0.808 38 H 0.222 0.778 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.016 0.984 42 H 0.039 0.961 43 H 0.248 0.752 44 H 0.062 0.938 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 -20.625 18.841 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.062 4.062 3 N -0.316 5.316 4 C 0.330 3.670 5 O -0.436 6.436 6 C -0.074 4.074 7 C -0.189 4.189 8 C -0.010 4.010 9 N -0.209 5.209 10 C 0.131 3.869 11 N -0.123 5.123 12 C -0.072 4.072 13 C -0.285 4.285 14 C -0.126 4.126 15 N -0.157 5.157 16 C -0.164 4.164 17 C 0.025 3.975 18 C 0.025 3.975 19 N -0.359 5.359 20 C -0.363 4.363 21 H 0.102 0.898 22 C -0.264 4.264 23 N -0.604 5.604 24 Si 0.812 3.188 25 H -0.187 1.187 26 H -0.224 1.224 27 H -0.211 1.211 28 C -0.013 4.013 29 H 0.077 0.923 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.224 0.776 35 H 0.247 0.753 36 H 0.224 0.776 37 H 0.209 0.791 38 H 0.238 0.762 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.907 -19.711 18.220 28.281 hybrid contribution 1.114 1.782 -0.584 2.181 sum -7.793 -17.929 17.637 26.329 Atomic orbital electron populations 1.22317 0.93320 1.04924 1.02873 1.22925 0.96439 0.80350 1.06522 1.47991 1.62668 1.15427 1.05491 1.18650 0.77538 0.86626 0.84166 1.90874 1.49162 1.17784 1.85814 1.20178 0.97230 0.96639 0.93370 1.23718 1.00565 0.93312 1.01281 1.23526 0.92562 0.98876 0.86056 1.66885 1.06049 1.14022 1.33968 1.17558 0.90713 0.92563 0.86053 1.45938 1.28955 1.23722 1.13686 1.23495 0.99480 0.99271 0.84923 1.22126 1.02298 0.99560 1.04481 1.24880 0.98496 0.98808 0.90374 1.77614 1.06102 1.07384 1.24648 1.21443 1.00994 1.01027 0.92981 1.23470 0.96892 0.91175 0.85940 1.22499 0.93304 0.86712 0.94943 1.46121 1.07900 1.30647 1.51214 1.19478 0.95420 1.03200 1.18161 0.89755 1.25734 0.95278 1.02349 1.03024 1.70052 1.00760 1.40455 1.49107 0.84924 0.77824 0.78251 0.77785 1.18707 1.22357 1.21086 1.22994 0.91761 0.91547 0.94957 0.92311 0.87038 0.91915 0.88520 0.86058 0.77560 0.75267 0.77605 0.79079 0.76190 0.86344 0.84493 0.96668 0.94233 0.94333 0.91971 0.94961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.12 71.98 0.66 -1.30 16 2 C 0.06 0.95 5.59 86.38 0.48 1.43 16 3 N -0.58 -17.69 2.74 -806.58 -2.21 -19.90 16 4 C 0.54 19.69 6.92 86.88 0.60 20.30 16 5 O -0.56 -27.27 12.50 -3.75 -0.05 -27.31 16 6 C -0.06 -1.77 5.62 -19.90 -0.11 -1.88 16 7 C -0.17 -2.69 7.60 22.64 0.17 -2.52 16 8 C 0.15 1.86 11.17 84.65 0.95 2.80 16 9 N -0.50 -9.95 9.83 -192.94 -1.90 -11.85 16 10 C 0.36 9.82 7.55 132.77 1.00 10.82 16 11 N -0.34 -9.43 3.81 -192.26 -0.73 -10.16 16 12 C 0.07 1.32 11.10 83.39 0.93 2.25 16 13 C -0.26 -4.14 10.80 22.01 0.24 -3.90 16 14 C 0.06 1.29 12.02 85.26 1.02 2.31 16 15 N -0.34 -10.17 11.83 -56.97 -0.67 -10.84 16 16 C -0.14 -4.57 9.28 22.76 0.21 -4.35 16 17 C 0.13 4.98 4.59 46.75 0.21 5.20 16 18 C 0.15 8.13 6.79 86.44 0.59 8.71 16 19 N -0.63 -35.92 3.70 -716.74 -2.65 -38.58 16 20 C -0.23 -14.24 10.70 84.03 0.90 -13.34 16 21 H 0.08 4.88 7.83 -2.91 -0.02 4.86 16 22 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 23 N -0.95 -61.97 11.39 21.65 0.25 -61.72 16 24 Si 0.98 48.63 29.55 68.60 2.03 50.66 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 28 C 0.11 5.12 8.27 86.49 0.72 5.83 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.72 7.13 -2.38 -0.02 0.71 16 32 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 33 H 0.12 1.52 3.98 -2.43 -0.01 1.51 16 34 H 0.21 1.96 2.68 -2.91 -0.01 1.95 16 35 H 0.23 0.27 8.06 -2.91 -0.02 0.24 16 36 H 0.21 2.68 8.05 -2.91 -0.02 2.66 16 37 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.22 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.12 4.72 7.61 -2.91 -0.02 4.70 16 40 H 0.14 4.50 8.07 -2.39 -0.02 4.48 16 41 H 0.02 0.94 5.76 -2.39 -0.01 0.92 16 42 H 0.04 2.30 7.16 -2.39 -0.02 2.29 16 43 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.03 1.60 6.25 -2.38 -0.01 1.59 16 Total: -1.00 -93.75 368.85 4.13 -89.63 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.03 Total: 11.59 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 9.03 Total: 28.47 kcal Atomic # 7 Polarization: -145.12 SS G_CDS: -7.92 Total: -153.04 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.31 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -93.75 4.13 -89.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951722837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 262.073 kcal (2) G-P(sol) polarization free energy of solvation -93.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds