Wall clock time and date at job start Wed Apr 1 2020 00:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47135 * 2 1 4 4 C 1.34771 * 119.99936 * 275.16104 * 3 2 1 5 5 O 1.21519 * 120.00031 * 183.45046 * 4 3 2 6 6 C 1.48184 * 120.00096 * 3.45859 * 4 3 2 7 7 C 1.39129 * 119.69264 * 186.03335 * 6 4 3 8 8 C 1.39283 * 118.97524 * 179.75335 * 7 6 4 9 9 N 1.39939 * 120.82471 * 180.23689 * 8 7 6 10 10 C 1.35818 * 126.10497 * 184.99290 * 9 8 7 11 11 C 1.35287 * 107.61908 * 179.83631 * 10 9 8 12 12 C 1.39947 * 107.96644 * 0.42024 * 11 10 9 13 13 N 1.30831 * 108.36397 * 359.73760 * 12 11 10 14 14 C 1.39284 * 118.35445 * 0.50459 * 8 7 6 15 15 C 1.38349 * 119.27539 * 359.73240 * 14 8 7 16 16 N 1.31597 * 120.97761 * 0.02562 * 15 14 8 17 17 C 1.46494 * 119.99565 * 95.15938 * 3 2 1 18 18 C 1.53502 * 114.20562 * 231.70280 * 17 3 2 19 19 N 1.47065 * 87.98737 * 220.15317 * 18 17 3 20 20 C 1.36933 * 136.05701 * 207.08592 * 19 18 17 21 21 H 1.07997 * 120.00384 * 354.71190 * 20 19 18 22 22 C 1.38810 * 120.00031 * 174.70842 * 20 19 18 23 23 N 1.31626 * 120.00059 * 183.83036 * 22 20 19 24 24 Si 1.86803 * 120.00246 * 3.83292 * 22 20 19 25 25 H 1.48493 * 109.47639 * 174.22667 * 24 22 20 26 26 H 1.48506 * 109.46904 * 294.22659 * 24 22 20 27 27 H 1.48500 * 109.46947 * 54.22088 * 24 22 20 28 28 C 1.47066 * 87.88758 * 27.34389 * 19 18 17 29 29 H 1.09003 * 109.46800 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47332 * 299.99443 * 1 2 3 31 31 H 1.08997 * 109.47667 * 60.00021 * 1 2 3 32 32 H 1.09000 * 109.47332 * 240.00557 * 2 1 3 33 33 H 1.08997 * 109.47667 * 119.99979 * 2 1 3 34 34 H 1.08004 * 120.51236 * 359.97438 * 7 6 4 35 35 H 1.08005 * 126.18560 * 359.95951 * 10 9 8 36 36 H 1.08004 * 126.01419 * 180.15723 * 11 10 9 37 37 H 1.07998 * 125.81521 * 179.69933 * 12 11 10 38 38 H 1.07994 * 120.36234 * 179.71188 * 14 8 7 39 39 H 1.07993 * 119.51311 * 180.02562 * 15 14 8 40 40 H 1.08996 * 113.28598 * 4.77485 * 17 3 2 41 41 H 1.08997 * 113.46331 * 105.37383 * 18 17 3 42 42 H 1.08999 * 113.46845 * 334.93382 * 18 17 3 43 43 H 0.96996 * 120.00270 * 5.01321 * 23 22 20 44 44 H 1.09000 * 113.46511 * 87.43385 * 28 19 18 45 45 H 1.08996 * 113.47288 * 217.88030 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1439 2.0516 -1.1624 5 8 2.6078 3.1747 -1.1691 6 6 1.7162 1.4191 -2.4324 7 6 1.9635 2.0632 -3.6406 8 6 1.5597 1.4528 -4.8256 9 7 1.7932 2.0637 -6.0627 10 6 1.3645 1.6148 -7.2707 11 6 1.7954 2.4890 -8.2090 12 6 2.5166 3.4977 -7.5603 13 7 2.5161 3.2445 -6.2767 14 6 0.9125 0.2218 -4.7485 15 6 0.6982 -0.3534 -3.5087 16 7 1.0957 0.2455 -2.4064 17 6 2.3700 2.0337 1.2636 18 6 1.7031 3.4003 1.4732 19 7 2.9753 3.8768 2.0364 20 6 3.3577 4.8363 2.9354 21 1 2.6244 5.5143 3.3463 22 6 4.6880 4.9376 3.3186 23 7 5.0434 5.8094 4.2384 24 14 5.9740 3.8366 2.5289 25 1 7.3240 4.2329 3.0036 26 1 5.7128 2.4234 2.9031 27 1 5.9072 3.9780 1.0521 28 6 3.6567 2.8736 1.2044 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.4640 3.0200 -3.6595 35 1 0.7829 0.7224 -7.4496 36 1 1.6179 2.4184 -9.2720 37 1 2.9931 4.3410 -8.0380 38 1 0.5814 -0.2781 -5.6468 39 1 0.1972 -1.3079 -3.4445 40 1 2.3060 1.3684 2.1245 41 1 0.8887 3.3792 2.1974 42 1 1.4276 3.8962 0.5425 43 1 4.3677 6.3298 4.7004 44 1 3.8961 3.2308 0.2028 45 1 4.5065 2.4039 1.6994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951732018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:59 Heat of formation + Delta-G solvation = 196.708577 kcal Electronic energy + Delta-G solvation = -29521.781923 eV Core-core repulsion = 25545.692253 eV Total energy + Delta-G solvation = -3976.089669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.03056 -40.97943 -39.65335 -37.25664 -35.79709 -34.53668 -32.31924 -31.88255 -30.78763 -30.32369 -30.00632 -27.67124 -25.38909 -25.11092 -24.48484 -23.28526 -22.89897 -21.73653 -21.23507 -20.13232 -19.44360 -18.19852 -17.42524 -16.94928 -16.64964 -16.43201 -15.88833 -15.57947 -15.46099 -15.23208 -14.81434 -14.60435 -14.16359 -14.09106 -13.99506 -13.53600 -13.36072 -13.24633 -13.03346 -12.95700 -12.44244 -12.35292 -11.90749 -11.57959 -11.54346 -11.28069 -11.19341 -11.10517 -10.76226 -10.59907 -10.23630 -9.94099 -9.74346 -9.65229 -9.48575 -9.14341 -8.96468 -8.85499 -8.77135 -8.18248 -6.96118 -6.19610 -3.09896 0.10570 0.46357 1.66046 1.79399 2.32459 2.68805 2.96636 3.48985 3.56998 3.60091 3.77248 3.81435 3.89154 4.11159 4.37729 4.41267 4.61948 4.67997 4.71096 4.97250 5.00625 5.10120 5.14095 5.17320 5.20878 5.34422 5.44118 5.52540 5.55189 5.55699 5.60884 5.71196 5.84424 5.93158 6.07538 6.11215 6.15785 6.40710 6.42909 6.46341 6.52446 6.56322 6.67393 7.12155 7.22066 7.30455 7.31884 7.60082 8.29483 8.34308 9.09534 9.61962 10.49903 11.32575 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.003086 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.805336 B = 9070.540677 C =10486.907490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 N -0.579 5.579 4 C 0.560 3.440 5 O -0.504 6.504 6 C 0.113 3.887 7 C -0.115 4.115 8 C 0.201 3.799 9 N -0.331 5.331 10 C 0.052 3.948 11 C -0.254 4.254 12 C 0.060 3.940 13 N -0.277 5.277 14 C -0.182 4.182 15 C 0.119 3.881 16 N -0.452 5.452 17 C 0.097 3.903 18 C 0.118 3.882 19 N -0.621 5.621 20 C -0.293 4.293 21 H 0.082 0.918 22 C -0.026 4.026 23 N -0.938 5.938 24 Si 1.074 2.926 25 H -0.297 1.297 26 H -0.293 1.293 27 H -0.287 1.287 28 C 0.076 3.924 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.162 0.838 35 H 0.181 0.819 36 H 0.158 0.842 37 H 0.194 0.806 38 H 0.144 0.856 39 H 0.173 0.827 40 H 0.118 0.882 41 H 0.041 0.959 42 H 0.050 0.950 43 H 0.259 0.741 44 H 0.080 0.920 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.129 -18.539 -25.698 33.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.310 5.310 4 C 0.345 3.655 5 O -0.379 6.379 6 C -0.025 4.025 7 C -0.138 4.138 8 C 0.100 3.900 9 N -0.108 5.108 10 C -0.088 4.088 11 C -0.282 4.282 12 C -0.128 4.128 13 N -0.095 5.095 14 C -0.205 4.205 15 C -0.040 4.040 16 N -0.165 5.165 17 C -0.007 4.007 18 C -0.010 4.010 19 N -0.349 5.349 20 C -0.420 4.420 21 H 0.099 0.901 22 C -0.224 4.224 23 N -0.581 5.581 24 Si 0.907 3.093 25 H -0.225 1.225 26 H -0.222 1.222 27 H -0.214 1.214 28 C -0.049 4.049 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.180 0.820 35 H 0.198 0.802 36 H 0.175 0.825 37 H 0.210 0.790 38 H 0.162 0.838 39 H 0.190 0.810 40 H 0.135 0.865 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.936 -18.046 -23.510 31.259 hybrid contribution -1.983 0.423 -1.831 2.732 sum -11.919 -17.622 -25.341 33.088 Atomic orbital electron populations 1.22064 0.95850 1.01423 1.01706 1.21905 0.94912 0.81619 1.03025 1.47889 1.62979 1.14339 1.05815 1.17796 0.79653 0.85471 0.82575 1.90853 1.43285 1.18112 1.85625 1.21288 0.96116 0.91248 0.93821 1.21858 0.99958 1.02387 0.89576 1.17648 0.97032 0.92158 0.83133 1.45981 1.41248 1.19478 1.04087 1.22807 1.00845 1.00960 0.84222 1.21689 1.07961 0.97686 1.00872 1.24235 0.98155 0.99766 0.90681 1.77642 1.14812 0.98522 1.18483 1.21990 1.02739 0.94557 1.01246 1.22807 0.95427 0.99469 0.86311 1.68328 1.09454 1.08275 1.30442 1.23729 0.99169 0.93635 0.84150 1.22661 0.90946 0.90567 0.96833 1.45776 1.02250 1.41279 1.45614 1.20135 0.95952 1.09651 1.16248 0.90063 1.25677 0.96564 1.00957 0.99182 1.70925 1.35526 1.25835 1.25815 0.83668 0.75688 0.74292 0.75634 1.22465 1.22221 1.21433 1.23504 0.94314 0.89753 0.97355 0.92279 0.93380 0.91971 0.88147 0.91366 0.82007 0.80226 0.82475 0.78960 0.83811 0.81036 0.86466 0.94034 0.93212 0.93075 0.90273 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.51 37.15 0.35 -1.20 16 2 C 0.11 1.25 5.72 -4.04 -0.02 1.22 16 3 N -0.58 -9.18 2.77 -166.71 -0.46 -9.64 16 4 C 0.56 9.56 7.10 -12.18 -0.09 9.48 16 5 O -0.50 -10.69 11.87 5.35 0.06 -10.63 16 6 C 0.11 1.52 6.51 -83.04 -0.54 0.98 16 7 C -0.12 -1.52 9.26 -38.86 -0.36 -1.88 16 8 C 0.20 2.10 6.72 -83.38 -0.56 1.54 16 9 N -0.33 -3.46 3.81 -10.41 -0.04 -3.50 16 10 C 0.05 0.36 10.85 -16.84 -0.18 0.18 16 11 C -0.25 -1.67 10.80 -39.99 -0.43 -2.11 16 12 C 0.06 0.51 12.02 -17.34 -0.21 0.31 16 13 N -0.28 -3.36 11.98 30.64 0.37 -3.00 16 14 C -0.18 -1.23 9.54 -39.15 -0.37 -1.61 16 15 C 0.12 0.81 11.17 -17.61 -0.20 0.61 16 16 N -0.45 -4.60 3.99 -9.86 -0.04 -4.64 16 17 C 0.10 1.85 4.80 -67.67 -0.32 1.53 16 18 C 0.12 2.62 8.10 -8.50 -0.07 2.55 16 19 N -0.62 -16.82 3.69 -184.60 -0.68 -17.50 16 20 C -0.29 -9.07 11.09 -15.06 -0.17 -9.24 16 21 H 0.08 2.62 8.05 -52.49 -0.42 2.19 16 22 C -0.03 -0.81 5.50 -17.43 -0.10 -0.91 16 23 N -0.94 -31.04 13.70 55.49 0.76 -30.28 16 24 Si 1.07 29.01 25.10 -169.99 -4.27 24.74 16 25 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 26 H -0.29 -7.37 6.35 56.52 0.36 -7.01 16 27 H -0.29 -7.60 6.66 56.52 0.38 -7.22 16 28 C 0.08 1.83 5.29 -8.36 -0.04 1.78 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.69 6.32 -51.93 -0.33 0.36 16 32 H 0.10 1.07 5.59 -51.93 -0.29 0.78 16 33 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 34 H 0.16 2.50 7.40 -52.48 -0.39 2.12 16 35 H 0.18 0.51 7.16 -52.48 -0.38 0.14 16 36 H 0.16 0.58 8.06 -52.48 -0.42 0.15 16 37 H 0.19 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.14 0.46 6.90 -52.49 -0.36 0.10 16 39 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.12 2.03 7.93 -51.93 -0.41 1.62 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 1.17 6.37 -51.93 -0.33 0.84 16 43 H 0.26 8.44 8.73 -40.82 -0.36 8.09 16 44 H 0.08 2.02 5.25 -51.93 -0.27 1.75 16 45 H 0.05 1.14 4.01 -51.93 -0.21 0.93 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -39.23 361.22 -7.72 -46.95 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.56 Total: -1.20 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -3.31 Total: 3.23 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -0.09 Total: -68.55 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.06 Total: -10.63 kcal Atomic # 14 Polarization: 29.01 SS G_CDS: -4.27 Total: 24.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.23 -7.72 -46.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951732018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.661 kcal (2) G-P(sol) polarization free energy of solvation -39.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 204.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds