Wall clock time and date at job start Wed Apr 1 2020 00:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47135 * 2 1 4 4 C 1.34771 * 119.99936 * 275.16104 * 3 2 1 5 5 O 1.21519 * 120.00031 * 183.45046 * 4 3 2 6 6 C 1.48184 * 120.00096 * 3.45859 * 4 3 2 7 7 C 1.39129 * 119.69264 * 186.03335 * 6 4 3 8 8 C 1.39283 * 118.97524 * 179.75335 * 7 6 4 9 9 N 1.39939 * 120.82471 * 180.23689 * 8 7 6 10 10 C 1.35818 * 126.10497 * 184.99290 * 9 8 7 11 11 C 1.35287 * 107.61908 * 179.83631 * 10 9 8 12 12 C 1.39947 * 107.96644 * 0.42024 * 11 10 9 13 13 N 1.30831 * 108.36397 * 359.73760 * 12 11 10 14 14 C 1.39284 * 118.35445 * 0.50459 * 8 7 6 15 15 C 1.38349 * 119.27539 * 359.73240 * 14 8 7 16 16 N 1.31597 * 120.97761 * 0.02562 * 15 14 8 17 17 C 1.46494 * 119.99565 * 95.15938 * 3 2 1 18 18 C 1.53502 * 114.20562 * 231.70280 * 17 3 2 19 19 N 1.47065 * 87.98737 * 220.15317 * 18 17 3 20 20 C 1.36933 * 136.05701 * 207.08592 * 19 18 17 21 21 H 1.07997 * 120.00384 * 354.71190 * 20 19 18 22 22 C 1.38810 * 120.00031 * 174.70842 * 20 19 18 23 23 N 1.31626 * 120.00059 * 183.83036 * 22 20 19 24 24 Si 1.86803 * 120.00246 * 3.83292 * 22 20 19 25 25 H 1.48493 * 109.47639 * 174.22667 * 24 22 20 26 26 H 1.48506 * 109.46904 * 294.22659 * 24 22 20 27 27 H 1.48500 * 109.46947 * 54.22088 * 24 22 20 28 28 C 1.47066 * 87.88758 * 27.34389 * 19 18 17 29 29 H 1.09003 * 109.46800 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47332 * 299.99443 * 1 2 3 31 31 H 1.08997 * 109.47667 * 60.00021 * 1 2 3 32 32 H 1.09000 * 109.47332 * 240.00557 * 2 1 3 33 33 H 1.08997 * 109.47667 * 119.99979 * 2 1 3 34 34 H 1.08004 * 120.51236 * 359.97438 * 7 6 4 35 35 H 1.08005 * 126.18560 * 359.95951 * 10 9 8 36 36 H 1.08004 * 126.01419 * 180.15723 * 11 10 9 37 37 H 1.07998 * 125.81521 * 179.69933 * 12 11 10 38 38 H 1.07994 * 120.36234 * 179.71188 * 14 8 7 39 39 H 1.07993 * 119.51311 * 180.02562 * 15 14 8 40 40 H 1.08996 * 113.28598 * 4.77485 * 17 3 2 41 41 H 1.08997 * 113.46331 * 105.37383 * 18 17 3 42 42 H 1.08999 * 113.46845 * 334.93382 * 18 17 3 43 43 H 0.96996 * 120.00270 * 5.01321 * 23 22 20 44 44 H 1.09000 * 113.46511 * 87.43385 * 28 19 18 45 45 H 1.08996 * 113.47288 * 217.88030 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1439 2.0516 -1.1624 5 8 2.6078 3.1747 -1.1691 6 6 1.7162 1.4191 -2.4324 7 6 1.9635 2.0632 -3.6406 8 6 1.5597 1.4528 -4.8256 9 7 1.7932 2.0637 -6.0627 10 6 1.3645 1.6148 -7.2707 11 6 1.7954 2.4890 -8.2090 12 6 2.5166 3.4977 -7.5603 13 7 2.5161 3.2445 -6.2767 14 6 0.9125 0.2218 -4.7485 15 6 0.6982 -0.3534 -3.5087 16 7 1.0957 0.2455 -2.4064 17 6 2.3700 2.0337 1.2636 18 6 1.7031 3.4003 1.4732 19 7 2.9753 3.8768 2.0364 20 6 3.3577 4.8363 2.9354 21 1 2.6244 5.5143 3.3463 22 6 4.6880 4.9376 3.3186 23 7 5.0434 5.8094 4.2384 24 14 5.9740 3.8366 2.5289 25 1 7.3240 4.2329 3.0036 26 1 5.7128 2.4234 2.9031 27 1 5.9072 3.9780 1.0521 28 6 3.6567 2.8736 1.2044 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.4640 3.0200 -3.6595 35 1 0.7829 0.7224 -7.4496 36 1 1.6179 2.4184 -9.2720 37 1 2.9931 4.3410 -8.0380 38 1 0.5814 -0.2781 -5.6468 39 1 0.1972 -1.3079 -3.4445 40 1 2.3060 1.3684 2.1245 41 1 0.8887 3.3792 2.1974 42 1 1.4276 3.8962 0.5425 43 1 4.3677 6.3298 4.7004 44 1 3.8961 3.2308 0.2028 45 1 4.5065 2.4039 1.6994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951732018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:58 Heat of formation + Delta-G solvation = 168.408591 kcal Electronic energy + Delta-G solvation = -29523.009102 eV Core-core repulsion = 25545.692253 eV Total energy + Delta-G solvation = -3977.316849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.69703 -42.06411 -40.78503 -38.87761 -36.96824 -35.36604 -34.54367 -32.73061 -31.56112 -31.29424 -30.76136 -29.53327 -27.11769 -26.43522 -25.23380 -24.40609 -24.17952 -22.60481 -21.97720 -21.67601 -20.56093 -19.66325 -19.06727 -18.09173 -17.80224 -17.20839 -17.11050 -16.82679 -16.40497 -16.36084 -16.03920 -15.67487 -15.44333 -15.18887 -15.09195 -14.74649 -14.64198 -14.40282 -14.25088 -13.85837 -13.71597 -13.47346 -13.22480 -13.14894 -13.00272 -12.57829 -12.49353 -12.29386 -12.15733 -11.80818 -11.57887 -11.47986 -11.20355 -11.09599 -10.99068 -10.45028 -10.41312 -10.29895 -9.60374 -9.48003 -9.19873 -8.70210 -5.52774 -0.63433 -0.28928 1.03892 1.19632 1.29576 1.43463 1.62120 1.64493 1.75782 1.79411 2.46389 2.69426 2.89610 3.01025 3.20180 3.25847 3.51668 3.54990 3.70690 3.87864 3.95268 4.02532 4.10739 4.23098 4.35866 4.39530 4.50283 4.55735 4.59150 4.64288 4.68334 4.69263 4.76902 4.80468 4.88946 4.91763 5.00001 5.07938 5.19265 5.25385 5.36075 5.56584 5.66084 5.75666 5.88082 6.01098 6.31950 6.51981 6.61800 6.64482 7.04072 7.25352 8.21492 8.84578 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.003086 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.805336 B = 9070.540677 C =10486.907490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.103 3.897 3 N -0.576 5.576 4 C 0.553 3.447 5 O -0.562 6.562 6 C 0.097 3.903 7 C -0.141 4.141 8 C 0.190 3.810 9 N -0.348 5.348 10 C 0.057 3.943 11 C -0.256 4.256 12 C 0.055 3.945 13 N -0.348 5.348 14 C -0.152 4.152 15 C 0.131 3.869 16 N -0.451 5.451 17 C 0.132 3.868 18 C 0.116 3.884 19 N -0.650 5.650 20 C -0.288 4.288 21 H 0.052 0.948 22 C -0.080 4.080 23 N -0.967 5.967 24 Si 1.112 2.888 25 H -0.297 1.297 26 H -0.258 1.258 27 H -0.289 1.289 28 C 0.068 3.932 29 H 0.091 0.909 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.228 0.772 36 H 0.190 0.810 37 H 0.212 0.788 38 H 0.195 0.805 39 H 0.227 0.773 40 H 0.148 0.852 41 H 0.054 0.946 42 H 0.034 0.966 43 H 0.248 0.752 44 H 0.061 0.939 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 -24.224 -28.837 40.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 N -0.306 5.306 4 C 0.340 3.660 5 O -0.440 6.440 6 C -0.039 4.039 7 C -0.164 4.164 8 C 0.088 3.912 9 N -0.125 5.125 10 C -0.082 4.082 11 C -0.284 4.284 12 C -0.133 4.133 13 N -0.166 5.166 14 C -0.175 4.175 15 C -0.028 4.028 16 N -0.165 5.165 17 C 0.028 3.972 18 C -0.011 4.011 19 N -0.379 5.379 20 C -0.416 4.416 21 H 0.070 0.930 22 C -0.272 4.272 23 N -0.613 5.613 24 Si 0.940 3.060 25 H -0.225 1.225 26 H -0.184 1.184 27 H -0.216 1.216 28 C -0.057 4.057 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.245 0.755 36 H 0.207 0.793 37 H 0.229 0.771 38 H 0.212 0.788 39 H 0.243 0.757 40 H 0.166 0.834 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.139 -23.792 -26.680 37.752 hybrid contribution -1.491 2.183 -1.101 2.864 sum -13.630 -21.608 -27.780 37.742 Atomic orbital electron populations 1.22005 0.94498 1.03149 1.00613 1.22270 0.95938 0.78843 1.04665 1.47954 1.62638 1.15879 1.04178 1.18453 0.78490 0.84892 0.84116 1.90814 1.45787 1.20756 1.86690 1.20546 0.98770 0.93020 0.91570 1.21572 1.01775 1.01601 0.91474 1.17921 0.97484 0.93407 0.82343 1.46115 1.41905 1.19469 1.05006 1.23669 0.99954 1.02015 0.82599 1.22145 1.07094 0.96712 1.02434 1.24796 0.97692 1.00708 0.90105 1.77613 1.17594 1.00797 1.20616 1.22567 0.99417 0.92162 1.03328 1.23739 0.93564 1.00371 0.85130 1.68263 1.09218 1.06703 1.32304 1.23184 0.94634 0.92741 0.86676 1.22740 0.89949 0.92475 0.95951 1.45921 1.05163 1.41081 1.45691 1.20040 0.95502 1.09747 1.16309 0.93036 1.26945 0.98849 1.01953 0.99470 1.71009 1.35293 1.27423 1.27566 0.83191 0.73380 0.74791 0.74673 1.22487 1.18382 1.21564 1.23581 0.96556 0.89901 0.95638 0.88989 0.94722 0.92879 0.86704 0.89563 0.86274 0.75546 0.79317 0.77121 0.78821 0.75707 0.83427 0.92742 0.94846 0.94334 0.92130 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.51 71.98 0.68 -1.73 16 2 C 0.10 2.04 5.72 86.38 0.49 2.53 16 3 N -0.58 -17.75 2.77 -799.63 -2.21 -19.96 16 4 C 0.55 19.52 7.10 86.89 0.62 20.14 16 5 O -0.56 -25.80 11.87 -3.78 -0.04 -25.84 16 6 C 0.10 2.60 6.51 41.86 0.27 2.87 16 7 C -0.14 -3.93 9.26 22.74 0.21 -3.72 16 8 C 0.19 3.69 6.72 38.35 0.26 3.94 16 9 N -0.35 -6.86 3.81 -186.86 -0.71 -7.58 16 10 C 0.06 0.58 10.85 83.39 0.91 1.49 16 11 C -0.26 -2.69 10.80 22.00 0.24 -2.46 16 12 C 0.05 0.92 12.02 85.26 1.02 1.94 16 13 N -0.35 -8.87 11.98 -56.98 -0.68 -9.55 16 14 C -0.15 -1.27 9.54 22.55 0.22 -1.06 16 15 C 0.13 1.04 11.17 84.75 0.95 1.98 16 16 N -0.45 -7.72 3.99 -185.12 -0.74 -8.46 16 17 C 0.13 4.96 4.80 45.56 0.22 5.18 16 18 C 0.12 5.28 8.10 83.18 0.67 5.95 16 19 N -0.65 -36.23 3.69 -737.94 -2.72 -38.96 16 20 C -0.29 -18.59 11.09 84.03 0.93 -17.66 16 21 H 0.05 3.53 8.05 -2.91 -0.02 3.51 16 22 C -0.08 -5.23 5.50 84.86 0.47 -4.76 16 23 N -0.97 -66.47 13.70 21.65 0.30 -66.17 16 24 Si 1.11 59.86 25.10 68.60 1.72 61.58 16 25 H -0.30 -15.85 7.11 99.48 0.71 -15.15 16 26 H -0.26 -12.27 6.35 99.48 0.63 -11.64 16 27 H -0.29 -15.45 6.66 99.48 0.66 -14.78 16 28 C 0.07 3.32 5.29 83.27 0.44 3.76 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 1.00 6.32 -2.39 -0.02 0.99 16 32 H 0.12 2.00 5.59 -2.39 -0.01 1.99 16 33 H 0.09 1.43 7.90 -2.39 -0.02 1.41 16 34 H 0.12 4.28 7.40 -2.91 -0.02 4.26 16 35 H 0.23 -0.18 7.16 -2.91 -0.02 -0.20 16 36 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 37 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.19 -0.33 6.90 -2.91 -0.02 -0.35 16 39 H 0.23 -0.57 8.06 -2.91 -0.02 -0.59 16 40 H 0.15 4.68 7.93 -2.39 -0.02 4.66 16 41 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.03 1.66 6.37 -2.39 -0.02 1.65 16 43 H 0.25 16.97 8.73 -92.71 -0.81 16.16 16 44 H 0.06 3.24 5.25 -2.39 -0.01 3.23 16 45 H 0.05 2.27 4.01 -2.39 -0.01 2.26 16 Total: -1.00 -96.79 361.22 4.37 -92.41 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 0.87 Total: 4.12 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 8.60 Total: 18.41 kcal Atomic # 7 Polarization: -143.90 SS G_CDS: -6.77 Total: -150.68 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.04 Total: -25.84 kcal Atomic # 14 Polarization: 59.86 SS G_CDS: 1.72 Total: 61.58 kcal Total: -96.79 4.37 -92.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951732018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.820 kcal (2) G-P(sol) polarization free energy of solvation -96.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds