Wall clock time and date at job start Wed Apr 1 2020 00:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47047 * 2 1 4 4 C 1.34781 * 119.99943 * 82.73867 * 3 2 1 5 5 O 1.21514 * 119.99784 * 183.72600 * 4 3 2 6 6 C 1.48166 * 119.99997 * 3.72586 * 4 3 2 7 7 C 1.39229 * 119.68463 * 173.15416 * 6 4 3 8 8 C 1.38714 * 119.18946 * 179.97438 * 7 6 4 9 9 C 1.38413 * 118.55168 * 359.75620 * 8 7 6 10 10 C 1.39262 * 119.30162 * 0.49013 * 9 8 7 11 11 N 1.39812 * 119.61975 * 179.77088 * 10 9 8 12 12 C 1.35843 * 126.10885 * 179.72606 * 11 10 9 13 13 C 1.35272 * 107.61750 * 179.75362 * 12 11 10 14 14 C 1.39959 * 107.96919 * 0.42546 * 13 12 11 15 15 N 1.30820 * 108.36743 * 359.56865 * 14 13 12 16 16 N 1.31978 * 120.76206 * 359.49374 * 10 9 8 17 17 C 1.46502 * 120.00214 * 262.73503 * 3 2 1 18 18 C 1.53942 * 113.74546 * 223.16352 * 17 3 2 19 19 N 1.47805 * 86.03698 * 222.08434 * 18 17 3 20 20 C 1.36944 * 134.45285 * 204.64251 * 19 18 17 21 21 H 1.08007 * 119.99588 * 184.80459 * 20 19 18 22 22 C 1.38804 * 120.00444 * 4.80844 * 20 19 18 23 23 N 1.31626 * 119.99794 * 5.08332 * 22 20 19 24 24 Si 1.86801 * 120.00380 * 185.08780 * 22 20 19 25 25 H 1.48504 * 109.46779 * 94.99649 * 24 22 20 26 26 H 1.48493 * 109.47236 * 214.99716 * 24 22 20 27 27 H 1.48499 * 109.46875 * 334.99834 * 24 22 20 28 28 C 1.47576 * 91.05283 * 24.54908 * 19 18 17 29 29 H 1.09004 * 109.47315 * 300.00358 * 1 2 3 30 30 H 1.09005 * 109.47112 * 60.00292 * 1 2 3 31 31 H 1.08996 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47128 * 240.00318 * 2 1 3 33 33 H 1.08998 * 109.47021 * 120.00093 * 2 1 3 34 34 H 1.08003 * 120.40701 * 0.02562 * 7 6 4 35 35 H 1.07999 * 120.72005 * 180.02562 * 8 7 6 36 36 H 1.08004 * 120.34367 * 180.24211 * 9 8 7 37 37 H 1.08004 * 126.18964 * 0.02562 * 12 11 10 38 38 H 1.07999 * 126.01999 * 180.29809 * 13 12 11 39 39 H 1.07999 * 125.81471 * 179.83209 * 14 13 12 40 40 H 1.09006 * 112.94161 * 354.75704 * 17 3 2 41 41 H 1.09000 * 113.76799 * 336.35289 * 18 17 3 42 42 H 1.09007 * 113.76901 * 107.74542 * 18 17 3 43 43 H 0.96997 * 119.99691 * 179.97438 * 23 22 20 44 44 H 1.09005 * 113.77107 * 221.15190 * 28 19 18 45 45 H 1.09000 * 113.77047 * 89.75351 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1038 2.0657 1.1579 5 8 2.4441 3.2322 1.1503 6 6 1.7829 1.3959 2.4399 7 6 2.0096 2.0618 3.6414 8 6 1.7049 1.4253 4.8356 9 6 1.1789 0.1459 4.7879 10 6 0.9821 -0.4644 3.5517 11 7 0.4557 -1.7585 3.4959 12 6 0.2059 -2.4732 2.3680 13 6 -0.2921 -3.6729 2.7455 14 6 -0.3591 -3.6922 4.1433 15 7 0.0911 -2.5493 4.5934 16 7 1.2816 0.1667 2.4320 17 6 2.4137 2.0184 -1.2585 18 6 3.7180 2.8301 -1.1593 19 7 3.0270 3.8470 -1.9798 20 6 3.4421 4.8389 -2.8278 21 1 2.7207 5.5162 -3.2607 22 6 4.7898 4.9739 -3.1311 23 7 5.6566 4.0895 -2.6848 24 14 5.3737 6.4106 -4.1725 25 1 5.8265 7.5126 -3.2860 26 1 6.5017 5.9722 -5.0329 27 1 4.2568 6.8891 -5.0262 28 6 1.7108 3.3627 -1.5203 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.4168 3.0621 3.6436 35 1 1.8704 1.9189 5.7818 36 1 0.9276 -0.3751 5.7000 37 1 0.3783 -2.1448 1.3537 38 1 -0.5882 -4.4741 2.0845 39 1 -0.7171 -4.5126 4.7476 40 1 2.3853 1.3356 -2.1078 41 1 3.9510 3.1653 -0.1487 42 1 4.5658 2.3622 -1.6598 43 1 6.5983 4.1836 -2.8971 44 1 0.9590 3.3193 -2.3083 45 1 1.3529 3.8548 -0.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951733102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:00 Heat of formation + Delta-G solvation = 167.660474 kcal Electronic energy + Delta-G solvation = -29851.156052 eV Core-core repulsion = 25873.806762 eV Total energy + Delta-G solvation = -3977.349290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.67204 -41.85606 -40.61590 -38.54291 -36.83935 -34.69785 -34.30092 -33.50968 -31.53529 -31.12895 -30.56726 -29.28509 -26.59116 -26.50530 -25.20408 -24.75984 -24.18240 -22.53562 -21.89802 -21.56350 -20.36156 -19.15261 -18.78413 -18.11442 -17.46165 -17.28505 -16.98071 -16.75346 -16.37603 -16.21473 -15.90972 -15.56197 -15.37742 -15.08513 -14.77180 -14.57138 -14.23690 -14.16915 -13.91405 -13.74383 -13.59279 -13.42224 -13.28004 -12.93228 -12.84786 -12.70728 -12.50173 -12.10335 -12.00236 -11.84231 -11.82925 -11.55296 -11.51344 -11.33617 -10.99012 -10.77780 -10.31914 -10.19717 -9.57184 -9.29864 -8.88070 -7.89455 -5.24895 -0.59794 -0.23695 0.99998 1.03143 1.43053 1.46669 1.55382 1.70615 1.84838 1.88248 2.48066 2.68213 2.88602 3.27260 3.38293 3.49194 3.60339 3.82992 3.84149 3.89107 4.08142 4.12443 4.21923 4.25796 4.33528 4.51678 4.54720 4.57665 4.64913 4.75209 4.81859 4.86161 4.94656 4.99734 5.00597 5.08504 5.10475 5.24480 5.27110 5.33258 5.45399 5.49282 5.64144 5.85828 5.92634 6.03322 6.17148 6.42870 6.72590 6.90312 7.10293 7.59249 8.56565 9.26073 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022951 B = 0.002704 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.693589 B =10352.928591 C =11094.634275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.093 3.907 3 N -0.578 5.578 4 C 0.556 3.444 5 O -0.551 6.551 6 C 0.101 3.899 7 C -0.130 4.130 8 C -0.038 4.038 9 C -0.143 4.143 10 C 0.349 3.651 11 N -0.339 5.339 12 C 0.055 3.945 13 C -0.258 4.258 14 C 0.068 3.932 15 N -0.316 5.316 16 N -0.469 5.469 17 C 0.123 3.877 18 C 0.147 3.853 19 N -0.631 5.631 20 C -0.234 4.234 21 H 0.081 0.919 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.983 3.017 25 H -0.291 1.291 26 H -0.289 1.289 27 H -0.264 1.264 28 C 0.116 3.884 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.151 0.849 35 H 0.190 0.810 36 H 0.166 0.834 37 H 0.191 0.809 38 H 0.184 0.816 39 H 0.227 0.773 40 H 0.128 0.872 41 H 0.026 0.974 42 H 0.046 0.954 43 H 0.248 0.752 44 H 0.055 0.945 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.287 -19.369 16.286 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 N -0.309 5.309 4 C 0.343 3.657 5 O -0.428 6.428 6 C -0.037 4.037 7 C -0.152 4.152 8 C -0.064 4.064 9 C -0.165 4.165 10 C 0.120 3.880 11 N -0.117 5.117 12 C -0.085 4.085 13 C -0.286 4.286 14 C -0.120 4.120 15 N -0.134 5.134 16 N -0.186 5.186 17 C 0.019 3.981 18 C 0.021 3.979 19 N -0.358 5.358 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.810 3.190 25 H -0.219 1.219 26 H -0.216 1.216 27 H -0.189 1.189 28 C -0.010 4.010 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.168 0.832 35 H 0.207 0.793 36 H 0.183 0.817 37 H 0.208 0.792 38 H 0.202 0.798 39 H 0.244 0.756 40 H 0.146 0.854 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.762 -18.209 16.253 28.020 hybrid contribution 0.645 1.012 -0.626 1.354 sum -13.117 -17.197 15.627 26.683 Atomic orbital electron populations 1.22027 0.94884 1.02722 1.00807 1.22367 0.95460 0.80353 1.04651 1.48012 1.62113 1.15281 1.05459 1.18275 0.78048 0.85615 0.83723 1.90855 1.48078 1.17195 1.86705 1.20706 0.99148 0.89801 0.94039 1.22282 0.98993 1.02169 0.91758 1.21911 0.92334 0.92690 0.99457 1.22054 1.00256 0.96329 0.97827 1.18056 0.95244 0.84021 0.90721 1.45844 1.49587 1.10397 1.05902 1.23486 0.98745 0.92705 0.93551 1.22089 1.11307 0.99334 0.95852 1.24847 0.95872 0.95555 0.95717 1.77423 1.22114 1.05172 1.08723 1.67287 1.14141 1.08881 1.28294 1.23550 0.95760 0.93120 0.85691 1.22635 0.94314 0.87672 0.93301 1.46001 1.02894 1.38242 1.48620 1.19401 0.92452 1.06300 1.18079 0.90082 1.25686 0.95893 1.01849 1.02719 1.70037 1.01622 1.37214 1.51069 0.84998 0.77865 0.78268 0.77824 1.21871 1.21550 1.18884 1.22962 0.89386 0.92079 0.96609 0.94112 0.93355 0.89394 0.89614 0.86990 0.83162 0.79253 0.81683 0.79171 0.79846 0.75644 0.85438 0.95581 0.93589 0.94274 0.92643 0.94499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.96 71.98 0.64 -2.31 16 2 C 0.09 2.20 5.52 86.38 0.48 2.67 16 3 N -0.58 -19.24 2.75 -806.57 -2.22 -21.46 16 4 C 0.56 20.09 7.02 86.88 0.61 20.70 16 5 O -0.55 -24.79 12.04 -3.76 -0.05 -24.83 16 6 C 0.10 2.83 6.52 41.88 0.27 3.10 16 7 C -0.13 -3.04 9.63 22.62 0.22 -2.82 16 8 C -0.04 -0.61 10.16 22.43 0.23 -0.38 16 9 C -0.14 -2.51 9.70 22.56 0.22 -2.29 16 10 C 0.35 7.55 7.55 132.94 1.00 8.55 16 11 N -0.34 -6.76 3.81 -192.19 -0.73 -7.50 16 12 C 0.06 0.89 11.10 83.39 0.93 1.81 16 13 C -0.26 -3.01 10.80 22.00 0.24 -2.78 16 14 C 0.07 0.83 12.02 85.26 1.02 1.86 16 15 N -0.32 -5.83 11.83 -56.97 -0.67 -6.51 16 16 N -0.47 -11.20 3.86 -181.92 -0.70 -11.90 16 17 C 0.12 4.96 4.60 46.75 0.21 5.17 16 18 C 0.15 7.76 6.99 86.44 0.60 8.37 16 19 N -0.63 -35.58 3.70 -716.77 -2.65 -38.23 16 20 C -0.23 -14.09 10.69 84.03 0.90 -13.19 16 21 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 22 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 23 N -0.95 -60.27 11.29 21.65 0.24 -60.02 16 24 Si 0.98 47.96 29.56 68.60 2.03 49.99 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 28 C 0.12 5.29 8.27 86.49 0.72 6.01 16 29 H 0.04 0.96 6.79 -2.38 -0.02 0.94 16 30 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.09 1.23 6.65 -2.39 -0.02 1.21 16 32 H 0.09 1.76 7.85 -2.39 -0.02 1.74 16 33 H 0.11 2.60 4.81 -3.78 -0.02 2.58 16 34 H 0.15 3.66 7.65 -2.91 -0.02 3.64 16 35 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.17 2.40 7.68 -2.91 -0.02 2.38 16 37 H 0.19 2.58 5.11 -2.91 -0.01 2.57 16 38 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.23 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.13 4.60 7.89 -2.38 -0.02 4.59 16 41 H 0.03 1.52 5.69 -2.39 -0.01 1.51 16 42 H 0.05 2.67 6.87 -2.38 -0.02 2.65 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.04 1.80 6.32 -2.39 -0.02 1.79 16 Total: -1.00 -81.50 365.09 5.04 -76.47 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.03 Total: 13.19 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: 8.76 Total: 30.81 kcal Atomic # 7 Polarization: -138.88 SS G_CDS: -6.73 Total: -145.62 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -81.50 5.04 -76.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951733102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.128 kcal (2) G-P(sol) polarization free energy of solvation -81.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds