Wall clock time and date at job start Wed Apr 1 2020 00:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47167 * 2 1 4 4 C 1.34782 * 120.00026 * 82.33077 * 3 2 1 5 5 O 1.21626 * 119.99990 * 182.34752 * 4 3 2 6 6 C 1.47145 * 119.99706 * 2.33766 * 4 3 2 7 7 C 1.37072 * 127.21696 * 349.90022 * 6 4 3 8 8 N 1.33307 * 106.37478 * 180.26045 * 7 6 4 9 9 N 1.28493 * 109.50132 * 359.97438 * 8 7 6 10 10 N 1.28721 * 110.67180 * 0.02562 * 9 8 7 11 11 C 1.40077 * 126.06099 * 180.02562 * 10 9 8 12 12 C 1.38863 * 120.07216 * 135.69504 * 11 10 9 13 13 C 1.38118 * 119.92721 * 179.69595 * 12 11 10 14 14 C 1.38279 * 120.07164 * 0.57574 * 13 12 11 15 15 C 1.38294 * 120.13830 * 359.72037 * 14 13 12 16 16 C 1.38105 * 120.06588 * 359.97438 * 15 14 13 17 17 C 1.46506 * 120.00224 * 262.32701 * 3 2 1 18 18 C 1.53941 * 113.74195 * 223.33520 * 17 3 2 19 19 N 1.47819 * 86.03451 * 222.08600 * 18 17 3 20 20 C 1.36933 * 134.45504 * 204.64843 * 19 18 17 21 21 H 1.08007 * 119.99968 * 179.86646 * 20 19 18 22 22 C 1.38810 * 120.00230 * 359.86652 * 20 19 18 23 23 N 1.31624 * 120.00125 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46910 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47146 * 119.99839 * 24 22 20 27 27 H 1.48496 * 109.47007 * 239.99893 * 24 22 20 28 28 C 1.47580 * 91.04933 * 24.55100 * 19 18 17 29 29 H 1.09004 * 109.46929 * 305.68436 * 1 2 3 30 30 H 1.09001 * 109.47428 * 65.68257 * 1 2 3 31 31 H 1.09006 * 109.47011 * 185.68262 * 1 2 3 32 32 H 1.09005 * 109.47266 * 240.00084 * 2 1 3 33 33 H 1.09000 * 109.47346 * 119.99781 * 2 1 3 34 34 H 1.08006 * 126.81105 * 0.20525 * 7 6 4 35 35 H 1.07995 * 120.03243 * 359.97344 * 12 11 10 36 36 H 1.07999 * 119.96048 * 180.29853 * 13 12 11 37 37 H 1.08001 * 119.93599 * 179.74718 * 14 13 12 38 38 H 1.08003 * 119.96486 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.03024 * 180.02562 * 16 15 14 40 40 H 1.09004 * 112.94009 * 354.92895 * 17 3 2 41 41 H 1.08994 * 113.77386 * 336.34855 * 18 17 3 42 42 H 1.08996 * 113.76438 * 107.75077 * 18 17 3 43 43 H 0.96999 * 120.00022 * 179.97438 * 23 22 20 44 44 H 1.09006 * 113.76786 * 221.15346 * 28 19 18 45 45 H 1.08995 * 113.76982 * 89.75743 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0961 2.0685 1.1568 5 8 2.4609 3.2287 1.1515 6 6 1.7394 1.4152 2.4261 7 6 1.1350 0.1958 2.5897 8 7 1.0031 0.0151 3.9039 9 7 1.4826 1.0314 4.5269 10 7 1.9372 1.9017 3.6945 11 6 2.5296 3.1274 4.0244 12 6 3.6877 3.5372 3.3769 13 6 4.2658 4.7492 3.7001 14 6 3.6993 5.5488 4.6757 15 6 2.5494 5.1407 5.3267 16 6 1.9631 3.9328 5.0036 17 6 2.4222 2.0154 -1.2574 18 6 3.7280 2.8239 -1.1523 19 7 3.0440 3.8414 -1.9781 20 6 3.4662 4.8308 -2.8254 21 1 2.7433 5.4584 -3.3254 22 6 4.8232 5.0272 -3.0416 23 7 5.7042 4.2627 -2.4319 24 14 5.3992 6.3774 -4.1969 25 1 4.2205 7.0904 -4.7515 26 1 6.2525 7.3367 -3.4507 27 1 6.1823 5.7782 -5.3072 28 6 1.7241 3.3612 -1.5249 29 1 -0.3633 0.5995 0.8348 30 1 -0.3634 0.4232 -0.9365 31 1 -0.3633 -1.0227 0.1018 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.8261 -0.4833 1.8088 35 1 4.1332 2.9109 2.6183 36 1 5.1637 5.0707 3.1935 37 1 4.1555 6.4943 4.9296 38 1 2.1091 5.7677 6.0880 39 1 1.0649 3.6148 5.5121 40 1 2.3965 1.3314 -2.1057 41 1 3.9564 3.1601 -0.1410 42 1 4.5772 2.3530 -1.6474 43 1 6.6525 4.3997 -2.5833 44 1 0.9764 3.3184 -2.3170 45 1 1.3626 3.8555 -0.6233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952370913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:11 Heat of formation + Delta-G solvation = 200.914751 kcal Electronic energy + Delta-G solvation = -30601.809058 eV Core-core repulsion = 26625.901782 eV Total energy + Delta-G solvation = -3975.907276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.61200 -40.14322 -39.30926 -36.98716 -36.10490 -34.52420 -32.37764 -31.42443 -30.91336 -30.46982 -29.91664 -27.46766 -25.03153 -24.76093 -23.89148 -23.60198 -23.38049 -22.23463 -21.64740 -20.18649 -19.18540 -18.02620 -17.23189 -16.74252 -16.68066 -16.46675 -15.67627 -15.46648 -15.15300 -14.77315 -14.57111 -14.45330 -14.13084 -13.75443 -13.60231 -13.21902 -13.02347 -12.92212 -12.50440 -12.46981 -11.97622 -11.87742 -11.76605 -11.59538 -11.47552 -11.37582 -11.30151 -11.20421 -10.88643 -10.72980 -10.61079 -10.24164 -9.99208 -9.71232 -9.51298 -9.43370 -9.05585 -8.81866 -8.66649 -8.28189 -6.81268 -5.75060 -3.05621 0.47353 1.24937 1.37052 1.96306 2.22460 3.03347 3.15843 3.39331 3.44959 3.47098 3.57301 4.18799 4.37024 4.49052 4.65805 4.73726 4.74884 4.79045 4.96530 5.00075 5.07701 5.21776 5.22874 5.25171 5.38406 5.49505 5.50867 5.58029 5.60203 5.63766 5.75650 5.80884 5.85986 6.07066 6.14928 6.17813 6.26713 6.36853 6.44567 6.48061 6.53708 6.82409 6.85338 7.26287 7.43897 7.55388 7.58853 7.99029 8.16998 8.29243 9.06602 9.72709 10.62355 11.42360 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.004314 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.681168 B = 6488.873278 C = 8604.820527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.077 3.923 3 N -0.581 5.581 4 C 0.579 3.421 5 O -0.495 6.495 6 C -0.054 4.054 7 C -0.029 4.029 8 N -0.272 5.272 9 N -0.060 5.060 10 N -0.207 5.207 11 C 0.101 3.899 12 C -0.052 4.052 13 C -0.102 4.102 14 C -0.098 4.098 15 C -0.118 4.118 16 C -0.092 4.092 17 C 0.091 3.909 18 C 0.156 3.844 19 N -0.602 5.602 20 C -0.216 4.216 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.113 3.887 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.224 0.776 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.038 0.962 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 -7.375 12.224 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.046 4.046 3 N -0.314 5.314 4 C 0.363 3.637 5 O -0.369 6.369 6 C -0.187 4.187 7 C -0.187 4.187 8 N -0.135 5.135 9 N -0.039 5.039 10 N 0.002 4.998 11 C 0.012 3.988 12 C -0.072 4.072 13 C -0.121 4.121 14 C -0.116 4.116 15 C -0.136 4.136 16 C -0.111 4.111 17 C -0.012 4.012 18 C 0.030 3.970 19 N -0.328 5.328 20 C -0.344 4.344 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C -0.014 4.014 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.239 0.761 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.636 -6.915 13.494 16.977 hybrid contribution 0.408 0.984 -1.733 2.035 sum -7.227 -5.931 11.760 15.024 Atomic orbital electron populations 1.22457 0.95655 1.02624 1.03653 1.22234 0.94628 0.83472 1.04274 1.47842 1.63429 1.13270 1.06839 1.16671 0.79430 0.85980 0.81622 1.90956 1.44957 1.15193 1.85787 1.22351 1.10434 0.97824 0.88114 1.25148 1.02047 0.96091 0.95437 1.74904 1.17041 1.16264 1.05333 1.78336 1.12179 0.95332 1.18078 1.44717 1.37161 1.13967 1.03914 1.17499 0.95932 0.83602 1.01776 1.21058 0.92187 0.97432 0.96551 1.21104 1.00749 0.93175 0.97068 1.21379 0.95379 0.99580 0.95277 1.20983 0.96330 0.95606 1.00723 1.20933 0.99998 0.93906 0.96301 1.24281 1.00264 0.93687 0.82960 1.22744 0.92139 0.86499 0.95604 1.45654 1.00444 1.37920 1.48751 1.19030 0.91075 1.07822 1.16429 0.90258 1.24753 0.95545 0.99642 1.00460 1.69831 1.00518 1.40629 1.45795 0.86067 0.78488 0.81277 0.80077 1.20492 1.21787 1.21748 1.22920 0.90602 0.90968 0.96958 0.91871 0.91185 0.90868 0.89081 0.89393 0.76058 0.84844 0.84430 0.85116 0.84887 0.85063 0.87220 0.92815 0.91361 0.93800 0.94357 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 8.57 37.15 0.32 -1.25 16 2 C 0.08 0.76 5.67 -4.05 -0.02 0.74 16 3 N -0.58 -8.52 2.75 -169.27 -0.47 -8.99 16 4 C 0.58 9.60 6.52 -12.64 -0.08 9.51 16 5 O -0.50 -9.92 9.13 5.25 0.05 -9.87 16 6 C -0.05 -0.81 6.54 -82.23 -0.54 -1.35 16 7 C -0.03 -0.37 8.62 -17.33 -0.15 -0.52 16 8 N -0.27 -3.98 12.34 30.49 0.38 -3.61 16 9 N -0.06 -0.94 12.94 60.35 0.78 -0.15 16 10 N -0.21 -3.20 3.49 -7.21 -0.03 -3.23 16 11 C 0.10 1.52 5.87 -83.62 -0.49 1.03 16 12 C -0.05 -0.80 7.47 -39.39 -0.29 -1.09 16 13 C -0.10 -1.37 10.04 -39.61 -0.40 -1.77 16 14 C -0.10 -1.09 10.04 -39.55 -0.40 -1.48 16 15 C -0.12 -1.26 10.04 -39.61 -0.40 -1.66 16 16 C -0.09 -1.16 9.81 -39.40 -0.39 -1.54 16 17 C 0.09 1.64 4.60 -70.15 -0.32 1.31 16 18 C 0.16 3.67 6.79 -2.84 -0.02 3.65 16 19 N -0.60 -15.55 3.70 -177.89 -0.66 -16.21 16 20 C -0.22 -6.10 10.70 -15.06 -0.16 -6.27 16 21 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.22 11.39 55.49 0.63 -26.59 16 24 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 28 C 0.11 2.37 8.27 -2.97 -0.02 2.34 16 29 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.76 7.84 -51.93 -0.41 0.36 16 33 H 0.09 0.78 4.79 -51.93 -0.25 0.53 16 34 H 0.22 2.05 3.43 -52.48 -0.18 1.87 16 35 H 0.13 2.23 6.81 -52.49 -0.36 1.87 16 36 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.78 7.89 -51.93 -0.41 1.37 16 41 H 0.05 1.36 5.65 -51.93 -0.29 1.06 16 42 H 0.07 1.76 7.17 -51.93 -0.37 1.39 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 1.09 6.35 -51.93 -0.33 0.76 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -34.21 360.82 -7.80 -42.01 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.44 Total: 2.68 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.46 Total: 1.34 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.64 Total: -58.78 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.05 Total: -9.87 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.21 -7.80 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952370913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.925 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds