Wall clock time and date at job start Wed Apr 1 2020 00:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47167 * 2 1 4 4 C 1.34782 * 120.00026 * 82.33077 * 3 2 1 5 5 O 1.21626 * 119.99990 * 182.34752 * 4 3 2 6 6 C 1.47145 * 119.99706 * 2.33766 * 4 3 2 7 7 C 1.37072 * 127.21696 * 349.90022 * 6 4 3 8 8 N 1.33307 * 106.37478 * 180.26045 * 7 6 4 9 9 N 1.28493 * 109.50132 * 359.97438 * 8 7 6 10 10 N 1.28721 * 110.67180 * 0.02562 * 9 8 7 11 11 C 1.40077 * 126.06099 * 180.02562 * 10 9 8 12 12 C 1.38863 * 120.07216 * 135.69504 * 11 10 9 13 13 C 1.38118 * 119.92721 * 179.69595 * 12 11 10 14 14 C 1.38279 * 120.07164 * 0.57574 * 13 12 11 15 15 C 1.38294 * 120.13830 * 359.72037 * 14 13 12 16 16 C 1.38105 * 120.06588 * 359.97438 * 15 14 13 17 17 C 1.46506 * 120.00224 * 262.32701 * 3 2 1 18 18 C 1.53941 * 113.74195 * 223.33520 * 17 3 2 19 19 N 1.47819 * 86.03451 * 222.08600 * 18 17 3 20 20 C 1.36933 * 134.45504 * 204.64843 * 19 18 17 21 21 H 1.08007 * 119.99968 * 179.86646 * 20 19 18 22 22 C 1.38810 * 120.00230 * 359.86652 * 20 19 18 23 23 N 1.31624 * 120.00125 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46910 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47146 * 119.99839 * 24 22 20 27 27 H 1.48496 * 109.47007 * 239.99893 * 24 22 20 28 28 C 1.47580 * 91.04933 * 24.55100 * 19 18 17 29 29 H 1.09004 * 109.46929 * 305.68436 * 1 2 3 30 30 H 1.09001 * 109.47428 * 65.68257 * 1 2 3 31 31 H 1.09006 * 109.47011 * 185.68262 * 1 2 3 32 32 H 1.09005 * 109.47266 * 240.00084 * 2 1 3 33 33 H 1.09000 * 109.47346 * 119.99781 * 2 1 3 34 34 H 1.08006 * 126.81105 * 0.20525 * 7 6 4 35 35 H 1.07995 * 120.03243 * 359.97344 * 12 11 10 36 36 H 1.07999 * 119.96048 * 180.29853 * 13 12 11 37 37 H 1.08001 * 119.93599 * 179.74718 * 14 13 12 38 38 H 1.08003 * 119.96486 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.03024 * 180.02562 * 16 15 14 40 40 H 1.09004 * 112.94009 * 354.92895 * 17 3 2 41 41 H 1.08994 * 113.77386 * 336.34855 * 18 17 3 42 42 H 1.08996 * 113.76438 * 107.75077 * 18 17 3 43 43 H 0.96999 * 120.00022 * 179.97438 * 23 22 20 44 44 H 1.09006 * 113.76786 * 221.15346 * 28 19 18 45 45 H 1.08995 * 113.76982 * 89.75743 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0961 2.0685 1.1568 5 8 2.4609 3.2287 1.1515 6 6 1.7394 1.4152 2.4261 7 6 1.1350 0.1958 2.5897 8 7 1.0031 0.0151 3.9039 9 7 1.4826 1.0314 4.5269 10 7 1.9372 1.9017 3.6945 11 6 2.5296 3.1274 4.0244 12 6 3.6877 3.5372 3.3769 13 6 4.2658 4.7492 3.7001 14 6 3.6993 5.5488 4.6757 15 6 2.5494 5.1407 5.3267 16 6 1.9631 3.9328 5.0036 17 6 2.4222 2.0154 -1.2574 18 6 3.7280 2.8239 -1.1523 19 7 3.0440 3.8414 -1.9781 20 6 3.4662 4.8308 -2.8254 21 1 2.7433 5.4584 -3.3254 22 6 4.8232 5.0272 -3.0416 23 7 5.7042 4.2627 -2.4319 24 14 5.3992 6.3774 -4.1969 25 1 4.2205 7.0904 -4.7515 26 1 6.2525 7.3367 -3.4507 27 1 6.1823 5.7782 -5.3072 28 6 1.7241 3.3612 -1.5249 29 1 -0.3633 0.5995 0.8348 30 1 -0.3634 0.4232 -0.9365 31 1 -0.3633 -1.0227 0.1018 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.8261 -0.4833 1.8088 35 1 4.1332 2.9109 2.6183 36 1 5.1637 5.0707 3.1935 37 1 4.1555 6.4943 4.9296 38 1 2.1091 5.7677 6.0880 39 1 1.0649 3.6148 5.5121 40 1 2.3965 1.3314 -2.1057 41 1 3.9564 3.1601 -0.1410 42 1 4.5772 2.3530 -1.6474 43 1 6.6525 4.3997 -2.5833 44 1 0.9764 3.3184 -2.3170 45 1 1.3626 3.8555 -0.6233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952370913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:10 Heat of formation + Delta-G solvation = 178.809228 kcal Electronic energy + Delta-G solvation = -30602.767625 eV Core-core repulsion = 26625.901782 eV Total energy + Delta-G solvation = -3976.865843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.74391 -41.52781 -40.31748 -38.62884 -37.26691 -35.62269 -34.30110 -32.69631 -32.01779 -31.48812 -30.96577 -29.33002 -26.57703 -26.38542 -25.06878 -24.83347 -24.45592 -23.30773 -22.93016 -21.57293 -20.56380 -19.15235 -18.79249 -18.27050 -17.85643 -17.51605 -17.11987 -16.73801 -16.57903 -16.24784 -15.89369 -15.68462 -15.46328 -15.15710 -14.65992 -14.38061 -14.27207 -14.12184 -13.96178 -13.69672 -13.39616 -13.04814 -12.97695 -12.92040 -12.79835 -12.73966 -12.56317 -12.50153 -12.36615 -12.12638 -11.98187 -11.82236 -11.69603 -11.48739 -11.16741 -10.72964 -10.57722 -10.07806 -9.82618 -9.62620 -8.87158 -7.90141 -5.22672 -0.63293 0.22916 0.31411 0.84502 1.11181 1.44225 1.45562 1.55779 1.81534 1.92043 2.48437 2.57186 3.09288 3.27861 3.31303 3.50532 3.61465 3.73164 3.74382 3.81249 3.97180 4.04423 4.09064 4.24933 4.28981 4.32382 4.37376 4.48735 4.55263 4.57451 4.73944 4.81910 4.86095 4.86951 4.99647 5.02764 5.16285 5.18663 5.24780 5.25556 5.37999 5.41059 5.42493 5.50839 5.82096 5.82712 5.92478 6.27012 6.92189 6.95116 7.10839 7.60654 8.57202 9.27118 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.004314 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.681168 B = 6488.873278 C = 8604.820527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 N -0.576 5.576 4 C 0.576 3.424 5 O -0.537 6.537 6 C -0.074 4.074 7 C -0.003 4.003 8 N -0.283 5.283 9 N -0.071 5.071 10 N -0.209 5.209 11 C 0.078 3.922 12 C -0.073 4.073 13 C -0.120 4.120 14 C -0.090 4.090 15 C -0.106 4.106 16 C -0.097 4.097 17 C 0.129 3.871 18 C 0.154 3.846 19 N -0.630 5.630 20 C -0.231 4.231 21 H 0.081 0.919 22 C -0.064 4.064 23 N -0.952 5.952 24 Si 0.977 3.023 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.287 1.287 28 C 0.114 3.886 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.258 0.742 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.029 0.971 42 H 0.038 0.962 43 H 0.247 0.753 44 H 0.058 0.942 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 -8.023 12.512 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.052 4.052 3 N -0.308 5.308 4 C 0.362 3.638 5 O -0.413 6.413 6 C -0.207 4.207 7 C -0.161 4.161 8 N -0.146 5.146 9 N -0.050 5.050 10 N 0.000 5.000 11 C -0.011 4.011 12 C -0.093 4.093 13 C -0.139 4.139 14 C -0.108 4.108 15 C -0.124 4.124 16 C -0.116 4.116 17 C 0.026 3.974 18 C 0.028 3.972 19 N -0.356 5.356 20 C -0.360 4.360 21 H 0.099 0.901 22 C -0.257 4.257 23 N -0.601 5.601 24 Si 0.806 3.194 25 H -0.190 1.190 26 H -0.222 1.222 27 H -0.214 1.214 28 C -0.012 4.012 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.273 0.727 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.182 0.818 38 H 0.191 0.809 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.606 -7.617 13.801 18.459 hybrid contribution 0.977 1.191 -1.741 2.325 sum -8.628 -6.426 12.060 16.161 Atomic orbital electron populations 1.22445 0.93957 1.04640 1.02979 1.22635 0.95928 0.80484 1.06189 1.47773 1.62948 1.15017 1.05064 1.16940 0.78678 0.85603 0.82577 1.90939 1.46715 1.17227 1.86462 1.22272 1.12053 0.98847 0.87496 1.25688 0.99813 0.95204 0.95395 1.74904 1.17450 1.16123 1.06104 1.78311 1.12632 0.95659 1.18405 1.44837 1.36899 1.14138 1.04094 1.17751 0.96295 0.84137 1.02951 1.20910 0.93261 0.98239 0.96906 1.21269 1.01173 0.93186 0.98287 1.21760 0.95207 1.00123 0.93742 1.21460 0.95490 0.94911 1.00565 1.21236 1.00411 0.94359 0.95624 1.23620 0.95545 0.93231 0.85048 1.22556 0.93778 0.87349 0.93515 1.46044 1.02898 1.37948 1.48728 1.19416 0.91505 1.08430 1.16630 0.90084 1.25589 0.95675 1.02053 1.02388 1.70030 1.00370 1.42261 1.47425 0.85026 0.78067 0.78411 0.77931 1.19016 1.22229 1.21425 1.22961 0.89422 0.92164 0.96621 0.93264 0.91429 0.87212 0.86595 0.88087 0.72662 0.87773 0.84700 0.81813 0.80883 0.83847 0.84256 0.95315 0.94361 0.94355 0.92339 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.57 71.98 0.62 -1.78 16 2 C 0.07 1.14 5.67 86.38 0.49 1.63 16 3 N -0.58 -16.44 2.75 -807.70 -2.22 -18.67 16 4 C 0.58 19.58 6.52 86.58 0.56 20.14 16 5 O -0.54 -22.81 9.13 -4.11 -0.04 -22.85 16 6 C -0.07 -2.22 6.54 40.36 0.26 -1.96 16 7 C 0.00 -0.07 8.62 84.19 0.73 0.66 16 8 N -0.28 -7.93 12.34 -57.46 -0.71 -8.64 16 9 N -0.07 -2.19 12.94 37.02 0.48 -1.72 16 10 N -0.21 -6.57 3.49 -176.72 -0.62 -7.19 16 11 C 0.08 2.42 5.87 38.12 0.22 2.64 16 12 C -0.07 -2.41 7.47 22.39 0.17 -2.24 16 13 C -0.12 -3.41 10.04 22.25 0.22 -3.19 16 14 C -0.09 -1.91 10.04 22.29 0.22 -1.68 16 15 C -0.11 -2.05 10.04 22.25 0.22 -1.83 16 16 C -0.10 -2.38 9.81 22.39 0.22 -2.16 16 17 C 0.13 4.60 4.60 46.75 0.21 4.82 16 18 C 0.15 7.57 6.79 86.44 0.59 8.15 16 19 N -0.63 -33.42 3.70 -716.72 -2.65 -36.07 16 20 C -0.23 -13.36 10.70 84.03 0.90 -12.46 16 21 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 22 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 23 N -0.95 -58.46 11.39 21.65 0.25 -58.22 16 24 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 28 C 0.11 4.83 8.27 86.49 0.72 5.54 16 29 H 0.05 0.82 6.43 -2.38 -0.02 0.80 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.12 1.46 7.84 -2.38 -0.02 1.44 16 33 H 0.10 1.46 4.79 -2.39 -0.01 1.45 16 34 H 0.26 3.86 3.43 -2.91 -0.01 3.85 16 35 H 0.10 3.95 6.81 -2.91 -0.02 3.93 16 36 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.14 4.20 7.89 -2.38 -0.02 4.18 16 41 H 0.03 1.57 5.65 -2.39 -0.01 1.56 16 42 H 0.04 2.08 7.17 -2.39 -0.02 2.06 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 44 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.03 1.50 6.35 -2.39 -0.02 1.49 16 Total: -1.00 -79.48 360.82 4.37 -75.10 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 1.04 Total: 16.73 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.83 Total: 13.04 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -5.48 Total: -130.50 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.04 Total: -22.85 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -79.48 4.37 -75.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952370913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.912 kcal (2) G-P(sol) polarization free energy of solvation -79.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds