Wall clock time and date at job start Wed Apr 1 2020 00:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47232 * 2 1 4 4 C 1.34778 * 120.00149 * 269.40872 * 3 2 1 5 5 O 1.21605 * 119.99773 * 186.47266 * 4 3 2 6 6 C 1.47426 * 119.99980 * 6.46768 * 4 3 2 7 7 C 1.41370 * 126.40256 * 7.97893 * 6 4 3 8 8 N 1.30449 * 108.07688 * 179.81892 * 7 6 4 9 9 N 1.39942 * 108.91386 * 0.43825 * 8 7 6 10 10 C 1.39809 * 125.77450 * 179.71471 * 9 8 7 11 11 C 1.38939 * 119.69272 * 359.73238 * 10 9 8 12 12 C 1.38418 * 119.11230 * 179.77302 * 11 10 9 13 13 C 1.38799 * 118.47645 * 0.48978 * 12 11 10 14 14 C 1.38132 * 119.29671 * 359.75160 * 13 12 11 15 15 N 1.31890 * 120.83849 * 0.02562 * 14 13 12 16 16 C 1.34626 * 108.44643 * 359.71826 * 9 8 7 17 17 C 1.46506 * 119.99756 * 89.39820 * 3 2 1 18 18 C 1.53946 * 113.73822 * 141.26337 * 17 3 2 19 19 N 1.47815 * 86.03592 * 90.88279 * 18 17 3 20 20 C 1.36938 * 134.45281 * 204.63933 * 19 18 17 21 21 H 1.08000 * 119.99639 * 174.15231 * 20 19 18 22 22 C 1.38808 * 120.00559 * 354.16111 * 20 19 18 23 23 N 1.31622 * 119.99720 * 4.93950 * 22 20 19 24 24 Si 1.86798 * 120.00395 * 184.94090 * 22 20 19 25 25 H 1.48491 * 109.47452 * 94.99518 * 24 22 20 26 26 H 1.48500 * 109.47331 * 214.99864 * 24 22 20 27 27 H 1.48506 * 109.46921 * 334.99560 * 24 22 20 28 28 C 1.47573 * 91.04841 * 24.54947 * 19 18 17 29 29 H 1.09006 * 109.47369 * 60.00379 * 1 2 3 30 30 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47544 * 299.99686 * 1 2 3 32 32 H 1.09004 * 109.47288 * 240.00074 * 2 1 3 33 33 H 1.09005 * 109.47279 * 120.00165 * 2 1 3 34 34 H 1.08000 * 125.96363 * 359.97438 * 7 6 4 35 35 H 1.08007 * 120.44296 * 359.97438 * 11 10 9 36 36 H 1.07993 * 120.76676 * 180.25920 * 12 11 10 37 37 H 1.07999 * 120.35122 * 179.72791 * 13 12 11 38 38 H 1.07995 * 119.57939 * 179.97438 * 14 13 12 39 39 H 1.08002 * 126.31478 * 179.97438 * 16 9 8 40 40 H 1.09000 * 112.94303 * 9.67670 * 17 3 2 41 41 H 1.08994 * 113.77168 * 205.14716 * 18 17 3 42 42 H 1.09007 * 113.76713 * 336.54879 * 18 17 3 43 43 H 0.97005 * 119.99777 * 180.02562 * 23 22 20 44 44 H 1.09003 * 113.76709 * 221.15246 * 28 19 18 45 45 H 1.09000 * 113.77143 * 89.75636 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2543 2.0126 -1.1671 5 8 2.7697 3.1140 -1.1692 6 6 1.8878 1.3678 -2.4412 7 6 1.1466 0.1738 -2.5945 8 7 1.0274 -0.0676 -3.8710 9 7 1.6850 0.9394 -4.5864 10 6 1.7816 1.0231 -5.9786 11 6 1.1949 0.0428 -6.7693 12 6 1.2938 0.1399 -8.1465 13 6 1.9881 1.2138 -8.6860 14 6 2.5508 2.1490 -7.8393 15 7 2.4359 2.0319 -6.5306 16 6 2.2089 1.8140 -3.7071 17 6 2.2499 2.0763 1.2687 18 6 3.5020 2.9719 1.2651 19 7 2.6014 4.0535 0.8136 20 6 2.7758 5.2164 0.1118 21 1 1.9186 5.8066 -0.1768 22 6 4.0542 5.6365 -0.2288 23 7 5.0911 4.8705 0.0366 24 14 4.3029 7.2888 -1.0638 25 1 4.6208 8.3174 -0.0411 26 1 5.4245 7.1903 -2.0321 27 1 3.0611 7.6723 -1.7823 28 6 1.4392 3.3761 1.4204 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.7466 -0.4316 -1.7946 35 1 0.6659 -0.7823 -6.3155 36 1 0.8443 -0.6047 -8.7866 37 1 2.0877 1.3170 -9.7565 38 1 3.0924 2.9862 -8.2541 39 1 2.7763 2.7008 -3.9480 40 1 2.1856 1.4154 2.1331 41 1 3.9261 3.1381 2.2553 42 1 4.2476 2.6817 0.5248 43 1 5.9846 5.1643 -0.2011 44 1 0.5408 3.4079 0.8039 45 1 1.2560 3.6612 2.4564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952392004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:47 Heat of formation + Delta-G solvation = 220.187370 kcal Electronic energy + Delta-G solvation = -30131.105227 eV Core-core repulsion = 26156.033675 eV Total energy + Delta-G solvation = -3975.071552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74203 -40.23833 -39.30099 -36.22975 -35.37298 -33.65068 -32.75999 -31.77482 -30.46181 -29.80750 -29.51719 -27.11707 -24.83209 -24.55553 -24.06852 -23.22007 -22.95069 -21.54088 -21.26391 -19.70879 -18.74390 -17.37358 -16.77180 -16.61195 -16.36589 -15.89435 -15.69415 -15.50720 -14.84365 -14.49028 -14.39195 -14.33202 -13.72267 -13.59936 -13.44722 -13.34815 -13.10670 -12.78581 -12.38875 -12.31401 -12.07871 -12.01731 -11.55297 -11.20867 -11.06377 -11.04062 -10.90221 -10.62390 -10.48778 -10.36612 -10.19150 -9.92779 -9.92230 -9.52724 -9.20524 -9.09408 -8.64109 -8.26219 -8.21846 -7.68923 -6.30681 -5.35510 -2.60356 0.44734 0.87966 1.97070 2.01023 2.38191 3.52729 3.59453 3.61220 3.64935 3.66674 4.08471 4.24905 4.32106 4.56304 4.68049 4.77903 4.79938 4.86088 5.06121 5.09233 5.21161 5.30481 5.39066 5.45287 5.47387 5.58653 5.68379 5.75973 5.77481 5.80936 5.84738 5.89663 5.95021 6.13126 6.18451 6.31341 6.40065 6.50733 6.69036 6.76143 6.97288 7.14210 7.25722 7.50949 7.68600 7.74456 7.97199 8.28380 8.37386 9.38730 9.42124 10.13615 11.00660 11.83925 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.004070 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.598437 B = 6878.251940 C = 9206.018600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.095 3.905 3 N -0.598 5.598 4 C 0.545 3.455 5 O -0.407 6.407 6 C -0.262 4.262 7 C 0.064 3.936 8 N -0.299 5.299 9 N -0.324 5.324 10 C 0.374 3.626 11 C -0.166 4.166 12 C -0.053 4.053 13 C -0.191 4.191 14 C 0.136 3.864 15 N -0.504 5.504 16 C 0.143 3.857 17 C 0.097 3.903 18 C 0.163 3.837 19 N -0.581 5.581 20 C -0.174 4.174 21 H 0.067 0.933 22 C -0.002 4.002 23 N -0.918 5.918 24 Si 0.895 3.105 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.286 1.286 28 C 0.102 3.898 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.222 0.778 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.167 0.833 39 H 0.194 0.806 40 H 0.077 0.923 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.243 0.757 44 H 0.037 0.963 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.380 -16.038 -11.619 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.029 4.029 3 N -0.335 5.335 4 C 0.328 3.672 5 O -0.272 6.272 6 C -0.276 4.276 7 C -0.124 4.124 8 N -0.117 5.117 9 N -0.099 5.099 10 C 0.147 3.853 11 C -0.188 4.188 12 C -0.080 4.080 13 C -0.212 4.212 14 C -0.022 4.022 15 N -0.217 5.217 16 C -0.001 4.001 17 C -0.007 4.007 18 C 0.036 3.964 19 N -0.307 5.307 20 C -0.302 4.302 21 H 0.084 0.916 22 C -0.197 4.197 23 N -0.567 5.567 24 Si 0.727 3.273 25 H -0.224 1.224 26 H -0.222 1.222 27 H -0.212 1.212 28 C -0.026 4.026 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.237 0.763 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.185 0.815 39 H 0.211 0.789 40 H 0.095 0.905 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.968 -15.261 -12.231 21.515 hybrid contribution 0.024 0.840 -0.381 0.922 sum -8.944 -14.421 -12.612 21.143 Atomic orbital electron populations 1.22506 0.96880 1.01802 1.03416 1.21887 0.93662 0.84452 1.02936 1.47204 1.68443 1.12614 1.05216 1.17394 0.81823 0.86219 0.81747 1.91455 1.35325 1.15618 1.84825 1.20907 1.11460 1.00210 0.94981 1.25691 0.96317 0.96285 0.94144 1.77178 1.19019 1.10172 1.05331 1.45431 1.41537 1.19918 1.03023 1.17769 0.94457 0.91944 0.81120 1.21626 1.02865 1.00441 0.93890 1.21518 0.95245 0.97164 0.94046 1.22170 1.00868 0.96306 1.01836 1.22591 0.95262 0.97938 0.86402 1.66940 1.17485 1.22208 1.15045 1.23215 0.94417 0.94661 0.87813 1.23064 1.00925 0.92869 0.83873 1.22462 0.92546 0.84299 0.97077 1.45545 1.02269 1.23070 1.59828 1.18592 0.91705 0.94843 1.25051 0.91561 1.24478 0.95520 0.97716 1.01965 1.69814 0.97371 1.35972 1.53575 0.86338 0.77057 0.85040 0.78840 1.22449 1.22227 1.21152 1.22994 0.93060 0.90594 0.95944 0.91739 0.91766 0.91469 0.89962 0.90672 0.76253 0.83331 0.83905 0.84060 0.81544 0.78864 0.90490 0.95509 0.90533 0.94667 0.94519 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 8.76 37.15 0.33 -1.57 16 2 C 0.09 1.13 5.60 -4.04 -0.02 1.11 16 3 N -0.60 -10.43 2.73 -169.16 -0.46 -10.89 16 4 C 0.54 11.34 7.18 -12.52 -0.09 11.25 16 5 O -0.41 -10.71 10.63 5.27 0.06 -10.65 16 6 C -0.26 -4.65 5.92 -105.05 -0.62 -5.27 16 7 C 0.06 0.91 8.60 -16.95 -0.15 0.76 16 8 N -0.30 -4.45 11.74 30.88 0.36 -4.09 16 9 N -0.32 -5.17 3.76 -11.74 -0.04 -5.21 16 10 C 0.37 5.31 7.54 -154.38 -1.16 4.14 16 11 C -0.17 -1.82 9.69 -39.26 -0.38 -2.20 16 12 C -0.05 -0.42 10.17 -39.31 -0.40 -0.82 16 13 C -0.19 -1.44 10.11 -39.41 -0.40 -1.84 16 14 C 0.14 1.35 11.18 -17.57 -0.20 1.16 16 15 N -0.50 -7.05 9.82 -12.29 -0.12 -7.17 16 16 C 0.14 2.57 10.88 -16.41 -0.18 2.39 16 17 C 0.10 1.84 4.72 -70.14 -0.33 1.51 16 18 C 0.16 3.97 6.38 -2.84 -0.02 3.96 16 19 N -0.58 -15.51 2.11 -177.88 -0.38 -15.88 16 20 C -0.17 -5.19 8.60 -15.06 -0.13 -5.32 16 21 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 22 C 0.00 -0.05 5.27 -17.43 -0.09 -0.14 16 23 N -0.92 -28.87 11.49 55.49 0.64 -28.24 16 24 Si 0.89 24.00 29.56 -169.99 -5.02 18.98 16 25 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 26 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 28 C 0.10 2.17 8.43 -2.97 -0.03 2.14 16 29 H 0.06 0.74 6.26 -51.93 -0.33 0.41 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.93 4.79 -51.93 -0.25 0.68 16 33 H 0.07 0.76 7.97 -51.93 -0.41 0.35 16 34 H 0.22 2.43 3.21 -52.49 -0.17 2.26 16 35 H 0.15 1.52 7.67 -52.48 -0.40 1.12 16 36 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.19 3.65 8.03 -52.49 -0.42 3.23 16 40 H 0.08 1.18 7.97 -51.93 -0.41 0.76 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 2.14 6.48 -51.93 -0.34 1.80 16 43 H 0.24 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -37.83 365.59 -8.99 -46.82 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.66 Total: -0.44 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -3.87 Total: 11.27 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: 0.00 Total: -71.48 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.06 Total: -10.65 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.02 Total: 18.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.83 -8.99 -46.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952392004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.008 kcal (2) G-P(sol) polarization free energy of solvation -37.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 229.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 220.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds