Wall clock time and date at job start Wed Apr 1 2020 00:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47232 * 2 1 4 4 C 1.34778 * 120.00149 * 269.40872 * 3 2 1 5 5 O 1.21605 * 119.99773 * 186.47266 * 4 3 2 6 6 C 1.47426 * 119.99980 * 6.46768 * 4 3 2 7 7 C 1.41370 * 126.40256 * 7.97893 * 6 4 3 8 8 N 1.30449 * 108.07688 * 179.81892 * 7 6 4 9 9 N 1.39942 * 108.91386 * 0.43825 * 8 7 6 10 10 C 1.39809 * 125.77450 * 179.71471 * 9 8 7 11 11 C 1.38939 * 119.69272 * 359.73238 * 10 9 8 12 12 C 1.38418 * 119.11230 * 179.77302 * 11 10 9 13 13 C 1.38799 * 118.47645 * 0.48978 * 12 11 10 14 14 C 1.38132 * 119.29671 * 359.75160 * 13 12 11 15 15 N 1.31890 * 120.83849 * 0.02562 * 14 13 12 16 16 C 1.34626 * 108.44643 * 359.71826 * 9 8 7 17 17 C 1.46506 * 119.99756 * 89.39820 * 3 2 1 18 18 C 1.53946 * 113.73822 * 141.26337 * 17 3 2 19 19 N 1.47815 * 86.03592 * 90.88279 * 18 17 3 20 20 C 1.36938 * 134.45281 * 204.63933 * 19 18 17 21 21 H 1.08000 * 119.99639 * 174.15231 * 20 19 18 22 22 C 1.38808 * 120.00559 * 354.16111 * 20 19 18 23 23 N 1.31622 * 119.99720 * 4.93950 * 22 20 19 24 24 Si 1.86798 * 120.00395 * 184.94090 * 22 20 19 25 25 H 1.48491 * 109.47452 * 94.99518 * 24 22 20 26 26 H 1.48500 * 109.47331 * 214.99864 * 24 22 20 27 27 H 1.48506 * 109.46921 * 334.99560 * 24 22 20 28 28 C 1.47573 * 91.04841 * 24.54947 * 19 18 17 29 29 H 1.09006 * 109.47369 * 60.00379 * 1 2 3 30 30 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47544 * 299.99686 * 1 2 3 32 32 H 1.09004 * 109.47288 * 240.00074 * 2 1 3 33 33 H 1.09005 * 109.47279 * 120.00165 * 2 1 3 34 34 H 1.08000 * 125.96363 * 359.97438 * 7 6 4 35 35 H 1.08007 * 120.44296 * 359.97438 * 11 10 9 36 36 H 1.07993 * 120.76676 * 180.25920 * 12 11 10 37 37 H 1.07999 * 120.35122 * 179.72791 * 13 12 11 38 38 H 1.07995 * 119.57939 * 179.97438 * 14 13 12 39 39 H 1.08002 * 126.31478 * 179.97438 * 16 9 8 40 40 H 1.09000 * 112.94303 * 9.67670 * 17 3 2 41 41 H 1.08994 * 113.77168 * 205.14716 * 18 17 3 42 42 H 1.09007 * 113.76713 * 336.54879 * 18 17 3 43 43 H 0.97005 * 119.99777 * 180.02562 * 23 22 20 44 44 H 1.09003 * 113.76709 * 221.15246 * 28 19 18 45 45 H 1.09000 * 113.77143 * 89.75636 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2543 2.0126 -1.1671 5 8 2.7697 3.1140 -1.1692 6 6 1.8878 1.3678 -2.4412 7 6 1.1466 0.1738 -2.5945 8 7 1.0274 -0.0676 -3.8710 9 7 1.6850 0.9394 -4.5864 10 6 1.7816 1.0231 -5.9786 11 6 1.1949 0.0428 -6.7693 12 6 1.2938 0.1399 -8.1465 13 6 1.9881 1.2138 -8.6860 14 6 2.5508 2.1490 -7.8393 15 7 2.4359 2.0319 -6.5306 16 6 2.2089 1.8140 -3.7071 17 6 2.2499 2.0763 1.2687 18 6 3.5020 2.9719 1.2651 19 7 2.6014 4.0535 0.8136 20 6 2.7758 5.2164 0.1118 21 1 1.9186 5.8066 -0.1768 22 6 4.0542 5.6365 -0.2288 23 7 5.0911 4.8705 0.0366 24 14 4.3029 7.2888 -1.0638 25 1 4.6208 8.3174 -0.0411 26 1 5.4245 7.1903 -2.0321 27 1 3.0611 7.6723 -1.7823 28 6 1.4392 3.3761 1.4204 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.7466 -0.4316 -1.7946 35 1 0.6659 -0.7823 -6.3155 36 1 0.8443 -0.6047 -8.7866 37 1 2.0877 1.3170 -9.7565 38 1 3.0924 2.9862 -8.2541 39 1 2.7763 2.7008 -3.9480 40 1 2.1856 1.4154 2.1331 41 1 3.9261 3.1381 2.2553 42 1 4.2476 2.6817 0.5248 43 1 5.9846 5.1643 -0.2011 44 1 0.5408 3.4079 0.8039 45 1 1.2560 3.6612 2.4564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952392004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:45 Heat of formation + Delta-G solvation = 195.150286 kcal Electronic energy + Delta-G solvation = -30132.190917 eV Core-core repulsion = 26156.033675 eV Total energy + Delta-G solvation = -3976.157242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.91662 -41.30314 -40.69637 -37.95963 -36.72889 -34.70081 -33.88400 -33.56933 -31.67959 -31.13153 -30.55362 -29.07667 -26.40352 -26.13982 -24.91835 -24.73360 -24.08484 -22.89773 -22.33339 -21.26396 -20.02224 -18.72551 -18.57365 -17.71774 -17.48995 -16.95480 -16.84294 -16.69013 -16.55663 -16.08731 -15.80882 -15.50970 -15.41632 -15.01519 -14.67735 -14.45252 -14.30909 -14.10319 -14.10051 -13.29802 -13.15110 -13.11131 -13.02602 -12.92824 -12.78415 -12.48629 -12.43274 -12.25691 -12.07050 -11.86392 -11.49594 -11.36845 -11.26736 -11.03487 -10.75682 -10.67003 -10.27585 -10.08860 -9.39720 -9.21557 -8.39527 -7.64022 -4.86168 -0.50009 0.14216 0.81192 0.93142 1.15279 1.40707 1.43338 1.50200 2.26277 2.60866 2.67951 2.75413 3.14787 3.36649 3.56339 3.60510 3.71806 3.89083 3.92771 3.97920 4.01568 4.06574 4.18093 4.25868 4.37429 4.49173 4.50512 4.55870 4.68361 4.70525 4.81829 4.89264 4.95203 4.98499 5.07838 5.10424 5.11875 5.28303 5.39001 5.43030 5.46559 5.52620 5.72758 5.84447 6.12985 6.18619 6.26509 6.79521 6.85806 7.16070 7.84957 7.90924 8.85302 9.55219 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.004070 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.598437 B = 6878.251940 C = 9206.018600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 N -0.595 5.595 4 C 0.540 3.460 5 O -0.479 6.479 6 C -0.278 4.278 7 C 0.081 3.919 8 N -0.294 5.294 9 N -0.320 5.320 10 C 0.326 3.674 11 C -0.166 4.166 12 C -0.045 4.045 13 C -0.167 4.167 14 C 0.117 3.883 15 N -0.546 5.546 16 C 0.125 3.875 17 C 0.128 3.872 18 C 0.158 3.842 19 N -0.608 5.608 20 C -0.167 4.167 21 H 0.055 0.945 22 C -0.060 4.060 23 N -0.946 5.946 24 Si 0.950 3.050 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.281 1.281 28 C 0.103 3.897 29 H 0.047 0.953 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.256 0.744 35 H 0.154 0.846 36 H 0.186 0.814 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.168 0.832 40 H 0.133 0.867 41 H 0.021 0.979 42 H 0.032 0.968 43 H 0.232 0.768 44 H 0.033 0.967 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 -19.187 -12.814 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.035 4.035 3 N -0.330 5.330 4 C 0.325 3.675 5 O -0.349 6.349 6 C -0.293 4.293 7 C -0.107 4.107 8 N -0.112 5.112 9 N -0.095 5.095 10 C 0.101 3.899 11 C -0.188 4.188 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.041 4.041 15 N -0.260 5.260 16 C -0.022 4.022 17 C 0.023 3.977 18 C 0.031 3.969 19 N -0.334 5.334 20 C -0.297 4.297 21 H 0.072 0.928 22 C -0.251 4.251 23 N -0.598 5.598 24 Si 0.782 3.218 25 H -0.217 1.217 26 H -0.230 1.230 27 H -0.207 1.207 28 C -0.023 4.023 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.271 0.729 35 H 0.172 0.828 36 H 0.204 0.796 37 H 0.202 0.798 38 H 0.204 0.796 39 H 0.185 0.815 40 H 0.151 0.849 41 H 0.039 0.961 42 H 0.051 0.949 43 H 0.042 0.958 44 H 0.051 0.949 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.509 -18.479 -13.430 25.579 hybrid contribution 0.718 1.729 -0.208 1.884 sum -10.791 -16.749 -13.638 24.145 Atomic orbital electron populations 1.22452 0.94845 1.04145 1.02585 1.22290 0.95202 0.81142 1.04912 1.47328 1.67416 1.14547 1.03680 1.17874 0.80537 0.85666 0.83395 1.91413 1.38673 1.18773 1.86087 1.20695 1.13170 1.01873 0.93523 1.26060 0.95110 0.94921 0.94600 1.77123 1.18765 1.09891 1.05413 1.45615 1.40764 1.19210 1.03894 1.18163 0.97345 0.93915 0.80496 1.21843 1.02260 0.99547 0.95159 1.22056 0.94210 0.97834 0.92964 1.22661 0.97959 0.94457 1.03569 1.23156 0.95913 0.99536 0.85477 1.66849 1.18603 1.23199 1.17318 1.22944 0.95347 0.94890 0.89011 1.22738 0.95887 0.92903 0.86181 1.22369 0.93604 0.85803 0.95107 1.45798 1.04967 1.22633 1.59967 1.18737 0.91210 0.95454 1.24274 0.92758 1.25082 0.95569 1.00695 1.03804 1.70009 0.97034 1.37231 1.55553 0.85448 0.76549 0.81929 0.77904 1.21724 1.23044 1.20679 1.23191 0.91598 0.91143 0.96401 0.93389 0.87749 0.91548 0.89266 0.87487 0.72932 0.82798 0.79636 0.79774 0.79613 0.81490 0.84911 0.96142 0.94933 0.95837 0.94893 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 8.76 71.98 0.63 -2.29 16 2 C 0.09 1.76 5.60 86.38 0.48 2.24 16 3 N -0.59 -20.14 2.73 -807.36 -2.20 -22.34 16 4 C 0.54 23.35 7.18 86.66 0.62 23.97 16 5 O -0.48 -26.93 10.63 -4.05 -0.04 -26.97 16 6 C -0.28 -10.28 5.92 -20.14 -0.12 -10.40 16 7 C 0.08 2.23 8.60 85.67 0.74 2.96 16 8 N -0.29 -8.58 11.74 -56.22 -0.66 -9.24 16 9 N -0.32 -10.62 3.76 -191.05 -0.72 -11.34 16 10 C 0.33 9.45 7.54 132.77 1.00 10.45 16 11 C -0.17 -3.39 9.69 22.48 0.22 -3.17 16 12 C -0.04 -0.55 10.17 22.45 0.23 -0.32 16 13 C -0.17 -1.94 10.11 22.38 0.23 -1.71 16 14 C 0.12 2.22 11.18 84.66 0.95 3.16 16 15 N -0.55 -15.94 9.82 -192.81 -1.89 -17.83 16 16 C 0.12 4.85 10.88 84.21 0.92 5.76 16 17 C 0.13 4.64 4.72 46.74 0.22 4.86 16 18 C 0.16 7.93 6.38 86.44 0.55 8.48 16 19 N -0.61 -33.47 2.11 -716.70 -1.51 -34.98 16 20 C -0.17 -10.44 8.60 84.03 0.72 -9.72 16 21 H 0.05 3.41 7.83 -2.91 -0.02 3.39 16 22 C -0.06 -3.80 5.27 84.86 0.45 -3.36 16 23 N -0.95 -63.02 11.49 21.65 0.25 -62.77 16 24 Si 0.95 51.93 29.56 68.60 2.03 53.96 16 25 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 26 H -0.30 -16.76 7.11 99.48 0.71 -16.05 16 27 H -0.28 -14.92 7.11 99.48 0.71 -14.22 16 28 C 0.10 4.31 8.43 86.49 0.73 5.04 16 29 H 0.05 0.96 6.26 -2.38 -0.01 0.94 16 30 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.75 4.79 -2.39 -0.01 1.74 16 33 H 0.11 1.61 7.97 -2.38 -0.02 1.59 16 34 H 0.26 4.85 3.21 -2.91 -0.01 4.84 16 35 H 0.15 2.87 7.67 -2.91 -0.02 2.85 16 36 H 0.19 0.69 8.06 -2.91 -0.02 0.66 16 37 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 38 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.17 7.23 8.03 -2.91 -0.02 7.20 16 40 H 0.13 3.45 7.97 -2.39 -0.02 3.43 16 41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.03 1.92 6.48 -2.38 -0.02 1.90 16 43 H 0.23 15.29 8.31 -92.70 -0.77 14.52 16 44 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -92.57 365.59 4.83 -87.74 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.02 Total: 7.82 kcal Atomic # 6 Polarization: 27.40 SS G_CDS: 8.56 Total: 35.96 kcal Atomic # 7 Polarization: -151.77 SS G_CDS: -6.74 Total: -158.50 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.04 Total: -26.97 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.03 Total: 53.96 kcal Total: -92.57 4.83 -87.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952392004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 282.887 kcal (2) G-P(sol) polarization free energy of solvation -92.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds