Wall clock time and date at job start Wed Apr 1 2020 00:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47096 * 2 1 4 4 C 1.34775 * 120.00261 * 99.17188 * 3 2 1 5 5 O 1.21576 * 119.99704 * 186.77337 * 4 3 2 6 6 C 1.47666 * 119.99880 * 6.77532 * 4 3 2 7 7 C 1.39705 * 120.08073 * 149.67643 * 6 4 3 8 8 C 1.37733 * 119.91998 * 180.02562 * 7 6 4 9 9 C 1.39021 * 120.08161 * 0.02562 * 8 7 6 10 10 N 1.39929 * 119.92431 * 179.97438 * 9 8 7 11 11 C 1.36353 * 127.10853 * 359.68193 * 10 9 8 12 12 N 1.30504 * 107.19356 * 180.26284 * 11 10 9 13 13 N 1.28536 * 109.91830 * 0.02562 * 12 11 10 14 14 C 1.30496 * 109.92298 * 359.97438 * 13 12 11 15 15 C 1.39034 * 120.16264 * 0.25247 * 9 8 7 16 16 C 1.37736 * 120.07495 * 359.44679 * 15 9 8 17 17 C 1.46500 * 119.99639 * 279.16708 * 3 2 1 18 18 C 1.53951 * 113.74408 * 222.66986 * 17 3 2 19 19 N 1.47810 * 86.03633 * 222.08739 * 18 17 3 20 20 C 1.36943 * 134.45659 * 204.64166 * 19 18 17 21 21 H 1.08000 * 120.00198 * 179.86825 * 20 19 18 22 22 C 1.38815 * 119.99601 * 359.87181 * 20 19 18 23 23 N 1.31619 * 120.00189 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99797 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47555 * 89.99651 * 24 22 20 26 26 H 1.48502 * 109.47058 * 209.99560 * 24 22 20 27 27 H 1.48503 * 109.47050 * 329.99516 * 24 22 20 28 28 C 1.47584 * 91.05436 * 24.54964 * 19 18 17 29 29 H 1.08994 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47374 * 300.00718 * 1 2 3 31 31 H 1.09007 * 109.46877 * 60.00579 * 1 2 3 32 32 H 1.08998 * 109.47392 * 240.00025 * 2 1 3 33 33 H 1.08998 * 109.46900 * 119.99669 * 2 1 3 34 34 H 1.08000 * 120.04054 * 359.97438 * 7 6 4 35 35 H 1.07996 * 119.96095 * 179.97438 * 8 7 6 36 36 H 1.07996 * 126.40748 * 0.24177 * 11 10 9 37 37 H 1.08005 * 126.40810 * 179.97438 * 14 13 12 38 38 H 1.07995 * 119.96078 * 179.72834 * 15 9 8 39 39 H 1.08001 * 120.03918 * 180.27200 * 16 15 9 40 40 H 1.09000 * 112.95025 * 354.26200 * 17 3 2 41 41 H 1.08994 * 113.76622 * 336.35460 * 18 17 3 42 42 H 1.08991 * 113.77064 * 107.74774 * 18 17 3 43 43 H 0.96996 * 119.99449 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.76648 * 221.15433 * 28 19 18 45 45 H 1.08993 * 113.77156 * 89.75301 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4184 1.9546 1.1522 5 8 2.7064 3.1355 1.1755 6 6 2.5068 1.1485 2.3863 7 6 3.4498 1.4690 3.3660 8 6 3.5297 0.7145 4.5155 9 6 2.6739 -0.3652 4.7013 10 7 2.7583 -1.1298 5.8702 11 6 3.6221 -0.9506 6.9098 12 7 3.3671 -1.8815 7.7881 13 7 2.4074 -2.6272 7.3698 14 6 1.9981 -2.2119 6.2023 15 6 1.7380 -0.6907 3.7260 16 6 1.6482 0.0631 2.5767 17 6 2.0719 2.1391 -1.2526 18 6 3.3605 2.9641 -1.4233 19 7 2.4830 4.0382 -1.9344 20 6 2.6653 5.1120 -2.7644 21 1 1.8367 5.7668 -2.9902 22 6 3.9152 5.3587 -3.3157 23 7 4.9251 4.5609 -3.0402 24 14 4.1641 6.8238 -4.4475 25 1 4.5594 8.0085 -3.6441 26 1 5.2327 6.5137 -5.4309 27 1 2.8980 7.1140 -5.1672 28 6 1.3317 3.4877 -1.1931 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.1158 2.3068 3.2218 35 1 4.2587 0.9614 5.2731 36 1 4.3766 -0.1821 6.9911 37 1 1.2058 -2.6448 5.6096 38 1 1.0777 -1.5327 3.8718 39 1 0.9180 -0.1877 1.8214 40 1 1.8175 1.5371 -2.1249 41 1 3.8529 3.2094 -0.4824 42 1 4.0443 2.5612 -2.1703 43 1 5.7983 4.7332 -3.4258 44 1 0.3988 3.5021 -1.7567 45 1 1.2269 3.8872 -0.1844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953833636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:53 Heat of formation + Delta-G solvation = 184.595238 kcal Electronic energy + Delta-G solvation = -29142.586530 eV Core-core repulsion = 25165.971587 eV Total energy + Delta-G solvation = -3976.614943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.65847 -40.92998 -39.21094 -36.96909 -36.09958 -34.98438 -32.27600 -31.85979 -30.91245 -30.43378 -30.28645 -27.42516 -25.25351 -24.73234 -24.30486 -23.48781 -23.35503 -22.10466 -21.62449 -20.41811 -19.23188 -18.93315 -17.21403 -16.68631 -16.60163 -16.40778 -16.03053 -15.58553 -15.36609 -15.07510 -15.00245 -14.69509 -14.38405 -14.11412 -13.73517 -13.63364 -13.33197 -12.97625 -12.84620 -12.51761 -12.38766 -11.93598 -11.78977 -11.71848 -11.50982 -11.48242 -11.31457 -11.06726 -10.92029 -10.86626 -10.63604 -10.17200 -10.00252 -9.94064 -9.58038 -9.49534 -9.45115 -8.93438 -8.66452 -8.22448 -6.79492 -5.73028 -3.03758 0.07034 0.76034 1.53100 1.88212 2.42689 2.73814 3.04504 3.41125 3.43772 3.46193 3.47455 3.90241 4.02009 4.12563 4.26607 4.33107 4.50323 4.57673 4.64338 4.75050 4.82607 4.96752 5.06455 5.14763 5.20314 5.26747 5.37846 5.46220 5.50838 5.52327 5.59226 5.60941 5.65553 5.78166 5.82853 5.90096 6.02958 6.10126 6.30581 6.49919 6.54448 6.56919 6.89701 7.28461 7.52385 7.57418 7.65035 8.01149 8.19850 8.37418 9.08420 9.74571 10.64761 11.44427 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.002322 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.777982 B =12056.864741 C =12879.068396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.069 3.931 3 N -0.593 5.593 4 C 0.547 3.453 5 O -0.501 6.501 6 C -0.118 4.118 7 C -0.036 4.036 8 C -0.133 4.133 9 C 0.139 3.861 10 N -0.429 5.429 11 C 0.162 3.838 12 N -0.292 5.292 13 N -0.292 5.292 14 C 0.160 3.840 15 C -0.136 4.136 16 C -0.094 4.094 17 C 0.089 3.911 18 C 0.157 3.843 19 N -0.604 5.604 20 C -0.217 4.217 21 H 0.079 0.921 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.112 3.888 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.223 0.777 37 H 0.223 0.777 38 H 0.137 0.863 39 H 0.172 0.828 40 H 0.105 0.895 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.253 0.747 44 H 0.036 0.964 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.455 -15.805 13.581 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.054 4.054 3 N -0.325 5.325 4 C 0.334 3.666 5 O -0.377 6.377 6 C -0.122 4.122 7 C -0.055 4.055 8 C -0.153 4.153 9 C 0.046 3.954 10 N -0.115 5.115 11 C -0.124 4.124 12 N -0.129 5.129 13 N -0.129 5.129 14 C -0.126 4.126 15 C -0.156 4.156 16 C -0.112 4.112 17 C -0.014 4.014 18 C 0.031 3.969 19 N -0.330 5.330 20 C -0.344 4.344 21 H 0.097 0.903 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.240 0.760 37 H 0.239 0.761 38 H 0.155 0.845 39 H 0.188 0.812 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.011 -15.823 14.684 22.697 hybrid contribution 0.111 1.577 -1.761 2.366 sum -6.900 -14.246 12.923 20.435 Atomic orbital electron populations 1.22312 0.95833 1.02342 1.03350 1.22417 0.94469 0.84038 1.04453 1.48022 1.63156 1.13348 1.08016 1.18103 0.78499 0.87179 0.82820 1.90905 1.47436 1.14754 1.84556 1.20327 0.98422 0.96994 0.96436 1.21196 0.96092 0.97697 0.90532 1.20808 1.00013 0.94962 0.99479 1.17922 0.98741 0.93246 0.85461 1.44308 1.27750 1.23855 1.15627 1.26846 0.97967 1.02609 0.85026 1.74258 1.10970 1.03739 1.23928 1.74247 1.08300 1.21923 1.08435 1.26806 1.00111 0.88915 0.96799 1.20803 0.99161 1.02243 0.93380 1.22328 0.99207 0.92818 0.96818 1.24148 1.02338 0.91358 0.83526 1.22692 0.91347 0.85160 0.97700 1.45680 1.06020 1.30259 1.51012 1.18991 0.95232 1.02085 1.18135 0.90280 1.24782 0.95562 0.99265 1.00980 1.69824 1.00690 1.38627 1.47674 0.86117 0.77411 0.82140 0.80083 1.21645 1.21676 1.20646 1.22948 0.92009 0.90367 0.96184 0.91284 0.92004 0.91087 0.90266 0.88190 0.83346 0.84370 0.76027 0.76065 0.84480 0.81161 0.87683 0.93107 0.91407 0.93737 0.94560 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.15 37.16 0.34 -0.98 16 2 C 0.07 0.63 5.58 -4.04 -0.02 0.60 16 3 N -0.59 -8.38 2.74 -169.07 -0.46 -8.84 16 4 C 0.55 8.43 6.86 -12.41 -0.09 8.35 16 5 O -0.50 -10.18 12.45 5.30 0.07 -10.12 16 6 C -0.12 -1.31 5.59 -104.95 -0.59 -1.90 16 7 C -0.04 -0.36 9.59 -39.22 -0.38 -0.74 16 8 C -0.13 -1.02 9.46 -39.48 -0.37 -1.39 16 9 C 0.14 1.04 6.65 -83.58 -0.56 0.48 16 10 N -0.43 -3.33 2.99 -63.17 -0.19 -3.52 16 11 C 0.16 1.33 12.06 -89.16 -1.08 0.26 16 12 N -0.29 -3.36 12.19 29.85 0.36 -3.00 16 13 N -0.29 -3.31 12.19 29.85 0.36 -2.95 16 14 C 0.16 1.25 12.06 -89.17 -1.08 0.17 16 15 C -0.14 -0.86 9.47 -39.47 -0.37 -1.24 16 16 C -0.09 -0.73 7.47 -39.22 -0.29 -1.02 16 17 C 0.09 1.63 4.58 -70.14 -0.32 1.31 16 18 C 0.16 3.79 6.79 -2.84 -0.02 3.77 16 19 N -0.60 -15.98 3.70 -177.87 -0.66 -16.64 16 20 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -27.80 11.39 55.49 0.63 -27.17 16 24 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.11 2.38 8.27 -2.96 -0.02 2.36 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.46 7.10 -51.93 -0.37 0.09 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.10 0.73 3.96 -52.36 -0.21 0.52 16 34 H 0.15 1.58 7.92 -52.49 -0.42 1.17 16 35 H 0.14 0.71 6.84 -52.49 -0.36 0.35 16 36 H 0.22 0.96 7.17 -52.49 -0.38 0.58 16 37 H 0.22 0.76 7.17 -52.48 -0.38 0.38 16 38 H 0.14 0.46 6.84 -52.49 -0.36 0.10 16 39 H 0.17 1.08 2.65 -52.49 -0.14 0.94 16 40 H 0.11 1.75 8.07 -51.93 -0.42 1.33 16 41 H 0.05 1.33 5.76 -51.93 -0.30 1.03 16 42 H 0.07 1.79 7.16 -51.93 -0.37 1.41 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 1.15 6.26 -51.93 -0.32 0.82 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -37.85 363.92 -9.78 -47.63 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.25 Total: -1.62 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -5.10 Total: 3.26 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.05 Total: -62.11 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.85 -9.78 -47.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953833636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.227 kcal (2) G-P(sol) polarization free energy of solvation -37.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds