Wall clock time and date at job start Wed Apr 1 2020 00:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47096 * 2 1 4 4 C 1.34775 * 120.00261 * 99.17188 * 3 2 1 5 5 O 1.21576 * 119.99704 * 186.77337 * 4 3 2 6 6 C 1.47666 * 119.99880 * 6.77532 * 4 3 2 7 7 C 1.39705 * 120.08073 * 149.67643 * 6 4 3 8 8 C 1.37733 * 119.91998 * 180.02562 * 7 6 4 9 9 C 1.39021 * 120.08161 * 0.02562 * 8 7 6 10 10 N 1.39929 * 119.92431 * 179.97438 * 9 8 7 11 11 C 1.36353 * 127.10853 * 359.68193 * 10 9 8 12 12 N 1.30504 * 107.19356 * 180.26284 * 11 10 9 13 13 N 1.28536 * 109.91830 * 0.02562 * 12 11 10 14 14 C 1.30496 * 109.92298 * 359.97438 * 13 12 11 15 15 C 1.39034 * 120.16264 * 0.25247 * 9 8 7 16 16 C 1.37736 * 120.07495 * 359.44679 * 15 9 8 17 17 C 1.46500 * 119.99639 * 279.16708 * 3 2 1 18 18 C 1.53951 * 113.74408 * 222.66986 * 17 3 2 19 19 N 1.47810 * 86.03633 * 222.08739 * 18 17 3 20 20 C 1.36943 * 134.45659 * 204.64166 * 19 18 17 21 21 H 1.08000 * 120.00198 * 179.86825 * 20 19 18 22 22 C 1.38815 * 119.99601 * 359.87181 * 20 19 18 23 23 N 1.31619 * 120.00189 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99797 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47555 * 89.99651 * 24 22 20 26 26 H 1.48502 * 109.47058 * 209.99560 * 24 22 20 27 27 H 1.48503 * 109.47050 * 329.99516 * 24 22 20 28 28 C 1.47584 * 91.05436 * 24.54964 * 19 18 17 29 29 H 1.08994 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47374 * 300.00718 * 1 2 3 31 31 H 1.09007 * 109.46877 * 60.00579 * 1 2 3 32 32 H 1.08998 * 109.47392 * 240.00025 * 2 1 3 33 33 H 1.08998 * 109.46900 * 119.99669 * 2 1 3 34 34 H 1.08000 * 120.04054 * 359.97438 * 7 6 4 35 35 H 1.07996 * 119.96095 * 179.97438 * 8 7 6 36 36 H 1.07996 * 126.40748 * 0.24177 * 11 10 9 37 37 H 1.08005 * 126.40810 * 179.97438 * 14 13 12 38 38 H 1.07995 * 119.96078 * 179.72834 * 15 9 8 39 39 H 1.08001 * 120.03918 * 180.27200 * 16 15 9 40 40 H 1.09000 * 112.95025 * 354.26200 * 17 3 2 41 41 H 1.08994 * 113.76622 * 336.35460 * 18 17 3 42 42 H 1.08991 * 113.77064 * 107.74774 * 18 17 3 43 43 H 0.96996 * 119.99449 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.76648 * 221.15433 * 28 19 18 45 45 H 1.08993 * 113.77156 * 89.75301 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4184 1.9546 1.1522 5 8 2.7064 3.1355 1.1755 6 6 2.5068 1.1485 2.3863 7 6 3.4498 1.4690 3.3660 8 6 3.5297 0.7145 4.5155 9 6 2.6739 -0.3652 4.7013 10 7 2.7583 -1.1298 5.8702 11 6 3.6221 -0.9506 6.9098 12 7 3.3671 -1.8815 7.7881 13 7 2.4074 -2.6272 7.3698 14 6 1.9981 -2.2119 6.2023 15 6 1.7380 -0.6907 3.7260 16 6 1.6482 0.0631 2.5767 17 6 2.0719 2.1391 -1.2526 18 6 3.3605 2.9641 -1.4233 19 7 2.4830 4.0382 -1.9344 20 6 2.6653 5.1120 -2.7644 21 1 1.8367 5.7668 -2.9902 22 6 3.9152 5.3587 -3.3157 23 7 4.9251 4.5609 -3.0402 24 14 4.1641 6.8238 -4.4475 25 1 4.5594 8.0085 -3.6441 26 1 5.2327 6.5137 -5.4309 27 1 2.8980 7.1140 -5.1672 28 6 1.3317 3.4877 -1.1931 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.1158 2.3068 3.2218 35 1 4.2587 0.9614 5.2731 36 1 4.3766 -0.1821 6.9911 37 1 1.2058 -2.6448 5.6096 38 1 1.0777 -1.5327 3.8718 39 1 0.9180 -0.1877 1.8214 40 1 1.8175 1.5371 -2.1249 41 1 3.8529 3.2094 -0.4824 42 1 4.0443 2.5612 -2.1703 43 1 5.7983 4.7332 -3.4258 44 1 0.3988 3.5021 -1.7567 45 1 1.2269 3.8872 -0.1844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953833636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:52 Heat of formation + Delta-G solvation = 161.603466 kcal Electronic energy + Delta-G solvation = -29143.583528 eV Core-core repulsion = 25165.971587 eV Total energy + Delta-G solvation = -3977.611941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.28576 -41.98612 -40.20473 -38.49207 -37.13003 -35.80720 -34.19281 -32.65033 -31.68861 -31.21239 -31.17707 -29.24528 -26.58268 -26.25714 -25.14045 -24.64800 -24.23507 -22.87358 -22.42920 -21.72742 -20.26260 -19.76185 -18.78479 -18.15840 -17.36809 -17.22887 -16.96376 -16.77118 -16.39395 -16.31734 -16.04507 -15.76802 -15.58515 -15.11174 -14.86706 -14.52630 -14.22220 -14.10590 -14.01451 -13.70662 -13.56628 -13.32570 -13.00065 -12.84226 -12.69771 -12.63614 -12.49055 -12.38811 -12.13281 -12.01592 -11.91867 -11.68899 -11.55048 -11.48841 -11.01050 -10.60271 -10.57119 -10.13143 -9.67778 -9.48779 -8.89676 -7.91956 -5.25185 -0.60906 0.15794 0.88557 1.29880 1.42213 1.45764 1.54189 1.76375 1.78090 1.95278 2.47919 2.63762 3.26540 3.33698 3.42127 3.50794 3.53114 3.62714 3.79698 3.81737 3.97723 4.01748 4.14486 4.21557 4.26317 4.38335 4.47796 4.51270 4.57876 4.63185 4.81185 4.82727 4.87855 4.95426 4.97627 5.00182 5.04444 5.18962 5.22755 5.25685 5.29480 5.43112 5.48272 5.49153 5.85984 5.91185 5.95359 6.48312 6.89918 7.21122 7.56481 7.58559 8.55875 9.25424 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.002322 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.777982 B =12056.864741 C =12879.068396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.061 3.939 3 N -0.591 5.591 4 C 0.541 3.459 5 O -0.565 6.565 6 C -0.139 4.139 7 C -0.052 4.052 8 C -0.127 4.127 9 C 0.144 3.856 10 N -0.431 5.431 11 C 0.167 3.833 12 N -0.336 5.336 13 N -0.338 5.338 14 C 0.175 3.825 15 C -0.120 4.120 16 C -0.082 4.082 17 C 0.128 3.872 18 C 0.154 3.846 19 N -0.634 5.634 20 C -0.234 4.234 21 H 0.083 0.917 22 C -0.071 4.071 23 N -0.954 5.954 24 Si 0.983 3.017 25 H -0.291 1.291 26 H -0.290 1.290 27 H -0.264 1.264 28 C 0.114 3.886 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.160 0.840 36 H 0.253 0.747 37 H 0.266 0.734 38 H 0.181 0.819 39 H 0.191 0.809 40 H 0.129 0.871 41 H 0.022 0.978 42 H 0.037 0.963 43 H 0.248 0.752 44 H 0.056 0.944 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.720 -18.294 13.913 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.059 4.059 3 N -0.322 5.322 4 C 0.331 3.669 5 O -0.445 6.445 6 C -0.143 4.143 7 C -0.072 4.072 8 C -0.147 4.147 9 C 0.051 3.949 10 N -0.117 5.117 11 C -0.120 4.120 12 N -0.172 5.172 13 N -0.174 5.174 14 C -0.112 4.112 15 C -0.139 4.139 16 C -0.100 4.100 17 C 0.024 3.976 18 C 0.028 3.972 19 N -0.361 5.361 20 C -0.362 4.362 21 H 0.101 0.899 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.810 3.190 25 H -0.218 1.218 26 H -0.216 1.216 27 H -0.188 1.188 28 C -0.013 4.013 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.178 0.822 36 H 0.269 0.731 37 H 0.282 0.718 38 H 0.198 0.802 39 H 0.207 0.793 40 H 0.147 0.853 41 H 0.040 0.960 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.327 -18.387 15.054 25.528 hybrid contribution 0.793 2.293 -1.737 2.984 sum -8.534 -16.094 13.317 22.565 Atomic orbital electron populations 1.22306 0.93873 1.04569 1.02725 1.22847 0.95976 0.80797 1.06308 1.48006 1.62950 1.15132 1.06138 1.18849 0.76933 0.86838 0.84270 1.90869 1.50118 1.17739 1.85773 1.20038 1.00851 0.98503 0.94882 1.21092 0.96379 0.98043 0.91657 1.20930 1.00439 0.94531 0.98806 1.18031 0.98590 0.92752 0.85502 1.44371 1.27827 1.24008 1.15543 1.27454 0.97984 1.02217 0.84394 1.74182 1.12129 1.05194 1.25661 1.74163 1.09393 1.23332 1.10487 1.27623 0.99778 0.87899 0.95903 1.21208 0.98551 1.02451 0.91715 1.22421 0.98352 0.91379 0.97864 1.23390 0.97010 0.90969 0.86272 1.22501 0.93102 0.86402 0.95191 1.46124 1.08364 1.30323 1.51284 1.19427 0.95581 1.02926 1.18283 0.89917 1.25700 0.95327 1.02290 1.03009 1.70038 1.00843 1.40412 1.49042 0.85020 0.77748 0.78287 0.77920 1.21783 1.21634 1.18818 1.23001 0.91699 0.91639 0.94912 0.87546 0.91886 0.92571 0.89136 0.85779 0.85449 0.82199 0.73131 0.71840 0.80225 0.79304 0.85294 0.96002 0.94479 0.94308 0.92544 0.94599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.15 71.98 0.66 -1.20 16 2 C 0.06 0.91 5.58 86.38 0.48 1.39 16 3 N -0.59 -16.36 2.74 -807.08 -2.21 -18.57 16 4 C 0.54 17.12 6.86 86.73 0.60 17.71 16 5 O -0.57 -24.67 12.45 -3.96 -0.05 -24.72 16 6 C -0.14 -2.97 5.59 -20.08 -0.11 -3.08 16 7 C -0.05 -1.05 9.59 22.50 0.22 -0.83 16 8 C -0.13 -1.69 9.46 22.34 0.21 -1.48 16 9 C 0.14 1.59 6.65 38.23 0.25 1.85 16 10 N -0.43 -5.14 2.99 -353.76 -1.06 -6.20 16 11 C 0.17 2.35 12.06 179.84 2.17 4.52 16 12 N -0.34 -7.28 12.19 -59.47 -0.73 -8.01 16 13 N -0.34 -7.01 12.19 -59.47 -0.73 -7.73 16 14 C 0.17 2.05 12.06 179.84 2.17 4.22 16 15 C -0.12 -0.90 9.47 22.34 0.21 -0.69 16 16 C -0.08 -0.97 7.47 22.50 0.17 -0.80 16 17 C 0.13 4.71 4.58 46.75 0.21 4.92 16 18 C 0.15 7.87 6.79 86.44 0.59 8.46 16 19 N -0.63 -34.91 3.70 -716.66 -2.65 -37.56 16 20 C -0.23 -13.86 10.70 84.03 0.90 -12.96 16 21 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 22 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 23 N -0.95 -60.18 11.39 21.65 0.25 -59.94 16 24 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 27 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.11 4.93 8.27 86.49 0.72 5.65 16 29 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.67 7.10 -2.39 -0.02 0.66 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.09 1.21 8.13 -2.39 -0.02 1.19 16 33 H 0.13 1.29 3.96 -2.79 -0.01 1.28 16 34 H 0.13 3.03 7.92 -2.91 -0.02 3.00 16 35 H 0.16 1.29 6.84 -2.91 -0.02 1.27 16 36 H 0.25 1.51 7.17 -2.91 -0.02 1.49 16 37 H 0.27 0.25 7.17 -2.91 -0.02 0.23 16 38 H 0.18 -0.14 6.84 -2.91 -0.02 -0.16 16 39 H 0.19 1.49 2.65 -2.91 -0.01 1.48 16 40 H 0.13 4.15 8.07 -2.39 -0.02 4.13 16 41 H 0.02 1.26 5.76 -2.39 -0.01 1.24 16 42 H 0.04 2.08 7.16 -2.39 -0.02 2.06 16 43 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.04 1.70 6.26 -2.39 -0.01 1.68 16 Total: -1.00 -90.86 363.92 5.80 -85.06 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.04 Total: 4.35 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 9.91 Total: 23.93 kcal Atomic # 7 Polarization: -130.88 SS G_CDS: -7.13 Total: -138.01 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -90.86 5.80 -85.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953833636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.668 kcal (2) G-P(sol) polarization free energy of solvation -90.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds